BAC Information

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BAC

Clone NameB6Ng01-042E08
Chromosome4 (Build37)
Map Location 79,842,351 - 79,968,853
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100040036, LOC667922
Downstream geneTyrp1, D4Bwg0951e, Mpdz
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042E08.bB6Ng01-042E08.g
ACCDH868697DH868698
length1,0481,085
definitionDH868697|Mus musculus domesticus DNA, BAC clone: B6Ng01-042E08, 5' end.DH868698|Mus musculus domesticus DNA, BAC clone: B6Ng01-042E08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,842,351 - 79,843,400)(79,967,752 - 79,968,853)
sequence
gaattcaggatactgcattagaaaatgggaagcgttgtcctctgataaac
catgaatactccatggaaagagcttagaggacaatgtcagtaagtccaaa
aggcccagtgccagaaaatcttgtctttctcatactacccactcaactta
gccttctaaggagagtattaattaataacaagagacatgtgacaggaatg
atgatttctataagcatataccatgctaagacatcagaagactccttaca
tgaaagtaaattaaggaattattaaatgaattaatttttaacttacactt
ggcttttttgttattctttgtttctgtttttgttctccataatacatctt
caaccccccaagccttttaatctttattcctcaatacagtttgagagatt
aagaaattatacagaaaattttagtacttcacaagcacttctatgcatca
aaacctgtactgacaccaagctaaagaaacatgccaaattttttcatgga
atcttatgaagcaagattagatttttttttctgaatagaattcttttttt
ttctttttttttatatttttattaggtattttcctcatttacatttccaa
tgctatcccaaaagtcccccataccctcccccccactcccctacccaccc
actcctactttttggaactggcgttaccctgtcctggggaatataaagtt
tgcaagtccaatgggcttctctttccagtgatggtcgactaggccatctt
ttgatacatatgcagctagagtcaagagctcaggggtactggttagttca
taatgttgttccacctatagggttgcagttccctttagctccttgggtac
tttctctagctcctccattgtgggccctgtgatccatccaatagctgact
gtgagcatccacttctgtgtttgttagccccgcatagtctcacaagaaag
agctctatctgggtctttcagcaaatcttgctagtatgtgcatggtgtca
gcgtttggagctgattatgggatggatcccagatatggcagtcctcta
gaattcaggtgacatgaaggagaatctaaaggttgctacatcctatttgt
caagactatatattatctaccataattgacattattcccaatattttgta
aatataaagtaacgcttgtagcagtgtgatcatccagacacatttctcct
ttaatgaagaagaaactggatcaaggaaatgttaagtcacagcatcatta
gacagcaggaaaaagagctgacatatgaactaagaacaacttggccttcg
tccattcacctaaaatctgttctcatttgataaaataatctaatgttttt
ttatagaatttatttgttgcataaacccttttgtagtgaagagtttgaag
ccttctttaccttaatacggattttcttacaaccaatacatttcttccat
ctgaactctacatttcttaaatcaggaaagtggagagaaagtacccggag
gtgatatgtgattgatcatcaagaatgactcaatgcgatacatgttaaca
tttgacagcagacaataagtgtgaaggaggctgcttgggtctacaaatct
ggttagcaacccatgtccaactgtggagcattaccagagatcctcatgat
ttccagcttctgatgtcctggctgctcacaaggcttatattttcctccag
attcagaatagtgccttggtagtgttttggaaacattgagtccccttcac
atctcccaggttttatttttgggcacattaaacctggattattcagatct
tgtctcccatagccccaatgctttgtaaagtgcttcccttttgggtttaa
ttttgactgttttctgttcctatttcctcatacactaaggtttagtaatt
aagtccagaattgtcaattctgaacattcaatgtgggtttgtattatatt
tcatgtccttaattaattactccagttgtttgtacgtaggacacagctat
aaagcaggggcgtattgttttaatatacccctcccaaagtgctgaccttg
ttccagtcaatttagttacagactttgctgggtacaggttaatttattta
tctgaatactggacttcgaaatttctgctgacatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_79842351_79843400
seq2: B6Ng01-042E08.b_46_1088

seq1  GAATTCAGGATACTGCATTAGAAAATGGGAAGCGTTGTCCTCTGATAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGATACTGCATTAGAAAATGGGAAGCGTTGTCCTCTGATAAAC  50

seq1  CATGAATACTCCATGGAAAGAGCTTAGAGGACAATGTCAGTAAGTCCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATACTCCATGGAAAGAGCTTAGAGGACAATGTCAGTAAGTCCAAA  100

seq1  AGGCCCAGTGCCAGAAAATCTTGTCTTTCTCATACTACCCACTCAACTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCCAGTGCCAGAAAATCTTGTCTTTCTCATACTACCCACTCAACTTA  150

seq1  GCCTTCTAAGGAGAGTATTAATTAATAACAAGAGACATGTGACAGGAATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCTAAGGAGAGTATTAATTAATAACAAGAGACATGTGACAGGAATG  200

seq1  ATGATTTCTATAAGCATATACCATGCTAAGACATCAGAAGACTCCTTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTCTATAAGCATATACCATGCTAAGACATCAGAAGACTCCTTACA  250

seq1  TGAAAGTAAATTAAGGAATTATTAAATGAATTAATTTTTAACTTACACTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGTAAATTAAGGAATTATTAAATGAATTAATTTTTAACTTACACTT  300

seq1  GGCTTTTTTGTTATTCTTTGTTTCTGTTTTTGTTCTCCATAATACATCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTTTGTTATTCTTTGTTTCTGTTTTTGTTCTCCATAATACATCTT  350

seq1  CAACCCCCCAAGCCTTTTAATCTTTATTCCTCAATACAGTTTGAGAGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCCCCAAGCCTTTTAATCTTTATTCCTCAATACAGTTTGAGAGATT  400

seq1  AAGAAATTATACAGAAAATTTTAGTACTTCACAAGCACTTCTATGCATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATTATACAGAAAATTTTAGTACTTCACAAGCACTTCTATGCATCA  450

seq1  AAACCTGTACTGACACCAAGCTAAAGAAACATGCCAAATTTTTTCATGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCTGTACTGACACCAAGCTAAAGAAACATGCCAAATTTTTTCATGGA  500

seq1  ATCTTATGAAGCAAGATTAGATTTTTTTTTCTGAATAGAATTCTTTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTATGAAGCAAGATTAGATTTTTTTTTCTGAATAGAATTCTTTTTTT  550

seq1  TTCTTTTTTTTTATATTTTTATTAGGTATTTTCCTCATTTACATTTCCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTTTTTTATATTTTTATTAGGTATTTTCCTCATTTACATTTCCAA  600

seq1  TGCTATCCCAAAAGTCCCCCATACCCTCCCCCCCACTCCCCTACCCACCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATCCCAAAAGTCCCCCATACCCTCCCCCCCACTCCCCTACCCACCC  650

seq1  ACTCCTACTTTTTGGAACTGGCGTTACCCTGTCCTGGGGAATATAAAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTACTTTTTGGAACTGGCGTTACCCTGTCCTGGGGAATATAAAGTT  700

seq1  TGCAAGTCCAATGGGCTTCTCTTTCCAGTGATGGTCGACTAGGCCATCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGTCCAATGGGCTTCTCTTTCCAGTGATGGTCGACTAGGCCATCTT  750

seq1  TTGATACATATGCAGCTAGAGTCAAGAGCTCAGGGGTACTGGTTAGTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATACATATGCAGCTAGAGTCAAGAGCTCAGGGGTACTGGTTAGTTCA  800

seq1  TAATGTTGTTCCACCTATAGGGTTGCAGTTCCCTTTAGCTCCTTGGGTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGTTGTTCCACCTATAGGGTTGCAGTTCCCTTTAGCTCCTTGGGTAC  850

seq1  TTTCTCTAGCTCCTCCATTGTGGGCCCTGTGATCCATCCAATAGCTGACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTAGCTCCTCCATTGTGGGCCCTGTGATCCATCCAATAGCTGACT  900

seq1  GTGAGCATCCACTTCTGTGTTTGTTAGGCCCCCGCATAGTCTCACAAGAA  950
      |||||||||||||||||||||||||||  |||||||||||||||||||||
seq2  GTGAGCATCCACTTCTGTGTTTGTTAG--CCCCGCATAGTCTCACAAGAA  948

seq1  AGAGCTCTATCTGGGTCCTTTCAGCAAAATCTTGCTAGTATGTGCAATGG  1000
      |||||||||||||||| |||||||| ||||||||||||||||||| ||||
seq2  AGAGCTCTATCTGGGT-CTTTCAGC-AAATCTTGCTAGTATGTGC-ATGG  995

seq1  TGTCAGCGTTTGGAAGCTGATTATGGGATGGATCCCCAGATATGGCAGTC  1050
      ||||||||||||| ||||||||||||||||||| ||||||||||||||||
seq2  TGTCAGCGTTTGG-AGCTGATTATGGGATGGAT-CCCAGATATGGCAGTC  1043

seq1: chr4_79967752_79968853
seq2: B6Ng01-042E08.g_67_1151 (reverse)

seq1  AATGTCAAGCAGAAATTTCTGAAAAGTCCCAGGTATTCAGGAAATAAATA  50
      |||||| ||||||||||||    ||||||   ||||||||   |||||||
seq2  AATGTC-AGCAGAAATTTC---GAAGTCC--AGTATTCAG---ATAAATA  41

seq1  AATATAACCTGTACCCAGGCAAAAGTCTGTAAACAAAATTGACTTGGAAC  100
      ||| ||||||||||||||   ||||||||| ||| |||||||| ||||||
seq2  AAT-TAACCTGTACCCAG--CAAAGTCTGT-AACTAAATTGAC-TGGAAC  86

seq1  AAGTGTCAGCACTATGGGGAGGGGTATATTAAAACAATTACGCCCCTGCT  150
      ||| ||||||||| | ||||||||||||||||||||| ||||||||||| 
seq2  AAG-GTCAGCACT-TTGGGAGGGGTATATTAAAACAA-TACGCCCCTGC-  132

seq1  TTTATAGCTGTGTCTTACGTTACAAAC-ACTTGAGTAATTAATTAAGGAC  199
      |||||||||||||| |||| ||||||| ||| ||||||||||||||||||
seq2  TTTATAGCTGTGTCCTACG-TACAAACAACTGGAGTAATTAATTAAGGAC  181

seq1  ATGAAATATAATACAAACCCACATTGAATGTTCAGAAATTGACAATTCTG  249
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  ATGAAATATAATACAAACCCACATTGAATGTTCAG-AATTGACAATTCTG  230

seq1  GACTTAATTACTAAACCTTAGTGTATGAGGAAATAGGAACAGAAAACAGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAATTACTAAACCTTAGTGTATGAGGAAATAGGAACAGAAAACAGT  280

seq1  CAAAATTAAACCC-AAAGGGAAGCACTTTACAAAGCATTGGGGCTATGGG  348
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CAAAATTAAACCCAAAAGGGAAGCACTTTACAAAGCATTGGGGCTATGGG  330

seq1  AGACAAGATCTGAATAATCCAGG-TTAATGTGCCCAAAAATAAAACCTGG  397
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AGACAAGATCTGAATAATCCAGGTTTAATGTGCCCAAAAATAAAACCTGG  380

seq1  GAGATGTGAAGGGGACTCAATGTTTCCAAAACACTACCAAGGCACTATTC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTGAAGGGGACTCAATGTTTCCAAAACACTACCAAGGCACTATTC  430

seq1  TGAATCTGGAGGAAAATATAAGCCTTGTGAGCAGCCAGGACATCAGAAGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTGGAGGAAAATATAAGCCTTGTGAGCAGCCAGGACATCAGAAGC  480

seq1  TGGAAATCATGAGGATCTCTGGTAATGCTCCACAGTTGGACATGGGTTGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATCATGAGGATCTCTGGTAATGCTCCACAGTTGGACATGGGTTGC  530

seq1  TAACCAGATTTGTAGACCCAAGCAGCCTCCTTCACACTTATTGTCTGCTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCAGATTTGTAGACCCAAGCAGCCTCCTTCACACTTATTGTCTGCTG  580

seq1  TCAAATGTTAACATGTATCGCATTGAGTCATTCTTGATGATCAATCACAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATGTTAACATGTATCGCATTGAGTCATTCTTGATGATCAATCACAT  630

seq1  ATCACCTCCGGGTACTTTCTCTCCACTTTCCTGATTTAAGAAATGTAGAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCTCCGGGTACTTTCTCTCCACTTTCCTGATTTAAGAAATGTAGAG  680

seq1  TTCAGATGGAAGAAATGTATTGGTTGTAAGAAAATCCGTATTAAGGTAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATGGAAGAAATGTATTGGTTGTAAGAAAATCCGTATTAAGGTAAA  730

seq1  GAAGGCTTCAAACTCTTCACTACAAAAGGGTTTATGCAACAAATAAATTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCTTCAAACTCTTCACTACAAAAGGGTTTATGCAACAAATAAATTC  780

seq1  TATAAAAAAACATTAGATTATTTTATCAAATGAGAACAGATTTTAGGTGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAAAACATTAGATTATTTTATCAAATGAGAACAGATTTTAGGTGA  830

seq1  ATGGACGAAGGCCAAGTTGTTCTTAGTTCATATGTCAGCTCTTTTTCCTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACGAAGGCCAAGTTGTTCTTAGTTCATATGTCAGCTCTTTTTCCTG  880

seq1  CTGTCTAATGATGCTGTGACTTAACATTTCCTTGATCCAGTTTCTTCTTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTAATGATGCTGTGACTTAACATTTCCTTGATCCAGTTTCTTCTTC  930

seq1  ATTAAAGGAGAAATGTGTCTGGATGATCACACTGCTACAAGCGTTACTTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAGGAGAAATGTGTCTGGATGATCACACTGCTACAAGCGTTACTTT  980

seq1  ATATTTACAAAATATTGGGAATAATGTCAATTATGGTAGATAATATATAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTACAAAATATTGGGAATAATGTCAATTATGGTAGATAATATATAG  1030

seq1  TCTTGACAAATAGGATGTAGCAACCTTTAGATTCTCCTTCATGTCACCTG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGACAAATAGGATGTAGCAACCTTTAGATTCTCCTTCATGTCACCTG  1080

seq1  AATTC  1102
      |||||
seq2  AATTC  1085