BAC Information

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BAC

Clone NameB6Ng01-042E21
Chromosome13 (Build37)4 (Build37)
Map Location 80,499,035 - 80,499,14855,900,338 - 55,901,486
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC666925, LOC382780, EG666933
Downstream geneArrdc3, LOC666964, LOC100043074, LOC218368, LOC666979, EG666984, Gpr98
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042E21.bB6Ng01-042E21.g
ACCDH868721DH868722
length3641,123
definitionDH868721|Mus musculus domesticus DNA, BAC clone: B6Ng01-042E21, 5' end.DH868722|Mus musculus domesticus DNA, BAC clone: B6Ng01-042E21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(80,499,035 - 80,499,148)(55,900,338 - 55,901,486)
sequence
gaattctgcttactggttttcttcttcttcttcttcttcttcttcttctt
cttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttct
tcttcttcttcttcttctcctccttctcctccttctcctccttctcctcc
ttctcctccttctcctccttctcctccttctttctcctccttctcctcct
tctcctccttctcctccttctcctccttctcctccttctcctccttctcc
tccttctcctccttctcctccttctcctccttctcctccttctcctcctt
ctcctccttctcctccttctcctccttctcctccttatcctccttctcct
ccttctcctccttc
gaattcatatttcctattgtaaatcacttcagggagcagggattacagag
cctttttccccagtgtaaatgcacccttcctcgcccctactccctgctct
cccgctctaaatgagaagctgagagcaaggccaggagaatacttgaggag
acttggagggaaagtggaggtcttttgtatgtgtgttctaacagctttta
gaaacgtcctccttttgggagatgaaaagaatgatctgaacaaagacctc
ctaagtgatacaaaaatattatgagtcggcaccttgaacccccatgattc
acaacaagaagtcccattcagagtatctgagcaaacactgtaaagaagga
ctcgccagcttcagagagggggcagctctcgagaaaatcgccattgattt
aagtgaaaacagtccagaaattcaggcctaattgaatcattgggctggtt
tatttttctggtctgtgttccacatatctcctcttctctctgtgactccc
aaggcagattcttctcgtggataaatgaggccgggtgaagagaacaggat
tcttgcccataattttttttcagcatatctagttgatttatctgttgata
ccactgtgctatggcagttaaaacatggcaacattagaacaagctgaaac
agactttgcgcatttatagagcatatgaaatgcacatgtaggagattcga
gagagacagtccagataagaaaatgaatgcaaacatccaccatcctttgg
ataaagttgaaggacatccaaggagggcttggctgcagaaccgaaaacac
agagatggaatttgagaattgtcggcttggaggatccttgacaggactct
acattcagacaggtgaatggcccaagcacaggggatcgcaatcacttggc
attctcctatgggagggctgttagcaaccaaaagaaacgtgtaatcccac
ctactttggatctctgcccctctggctgtttaggagaatggactcttctc
acactctctggtttgctttagttgtcgtgatatatatttttttttttttt
gggaaaaagaaacctcagaaagtcttttcctaggaggagctgagtgaatt
tggagctagagatggattgaagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr13_80499035_80499148
seq2: B6Ng01-042E21.b_186_406 (reverse)

seq1  ---GAAGGAGA---AGGAGAAGGAGGAAAAGGAGG---AGGAGGAGGAGG  41
         | ||||||   ||||||||||||| |||||||   |||||||| |||
seq2  GAAGGAGGAGAAGGAGGAGAAGGAGGATAAGGAGGAGAAGGAGGAGAAGG  50

seq1  AGGAGAAAGAGGAGGAGGAGGAGAAGGAGATGAAGAAGAAGAAGAAG---  88
      ||||||| |||||| ||||||||||||||  |||| || ||||| ||   
seq2  AGGAGAAGGAGGAGAAGGAGGAGAAGGAGGAGAAGGAGGAGAAGGAGGAG  100

seq1  -AGGAGGAGGAGGAGGAGAAGGAGGAG-----------------------  114
       |||||||| |||||||||||||||||                       
seq2  AAGGAGGAGAAGGAGGAGAAGGAGGAGAAGGAGGAGAAGGAGGAGAAGGA  150

seq1  --------------------------------------------------  114
                                                        
seq2  GGAGAAGGAGGAGAAGGAGGAGAAGGAGGAGAAAGAAGGAGGAGAAGGAG  200

seq1  ---------------------  114
                           
seq2  GAGAAGGAGGAGAAGGAGGAG  221

seq1: chr4_55900338_55901486
seq2: B6Ng01-042E21.g_66_1188 (reverse)

seq1  GCTTCAATCCCCATCCTCTGGGCTTTCCAAATATCTACTTCAGCTCTCTC  50
      ||||||||  |||| |||| |    ||||||| || || ||||||| |||
seq2  GCTTCAAT--CCAT-CTCTAG---CTCCAAAT-TC-AC-TCAGCTC-CTC  40

seq1  CTAAGGAAAAGAC-TTCTGGGGGTTTTCTTTTTCCAAAAAAAAAAAAAAA  99
      || |||||||||| ||||| ||  ||||||||||| ||||||||||||  
seq2  CT-AGGAAAAGACTTTCTGAGG--TTTCTTTTTCCCAAAAAAAAAAAA--  85

seq1  ATAATAATAATCAAACGACAACTAAAGCAAAACCAGAGAGTGTGAGAAAG  149
        ||||   |||  |||||||||||||| ||||||||||||||||| |||
seq2  --AATATATATC--ACGACAACTAAAGC-AAACCAGAGAGTGTGAG-AAG  129

seq1  AGTCCAATTTCTCCTTAAAACAGCCAGAGGGGCAGAGATCCAAAGTAGGT  199
      ||||||  |||||||  |||||||||||||||||||||||||||||||||
seq2  AGTCCA--TTCTCCT--AAACAGCCAGAGGGGCAGAGATCCAAAGTAGGT  175

seq1  GGGATTACACCGTTTCTTTTGGTTGCTAACAGCCCTCCCATAGGAGGAAT  249
      ||||||||| ||||||||||||||||||||||||||||||||||| ||||
seq2  GGGATTACA-CGTTTCTTTTGGTTGCTAACAGCCCTCCCATAGGA-GAAT  223

seq1  GCCAAGTGATTGCGATCCCCTGTGCTTGGGCCATTCACCTGTCTGAATGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGTGATTGCGATCCCCTGTGCTTGGGCCATTCACCTGTCTGAATGT  273

seq1  AGAGTCCTGTCAAGGATCCTCCAAGCCGACAATTCTCAAATTCCATCTCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCCTGTCAAGGATCCTCCAAGCCGACAATTCTCAAATTCCATCTCT  323

seq1  GTGTTTTCGGTTCTGCAGCCAAGCCCTCCTTGGATGTCCTTCAACTTTAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTTCGGTTCTGCAGCCAAGCCCTCCTTGGATGTCCTTCAACTTTAT  373

seq1  CCAAAGGATGGTGGATGTTTGCATTCATTTTCTTATCTGGACTGTCTCTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGGATGGTGGATGTTTGCATTCATTTTCTTATCTGGACTGTCTCTC  423

seq1  TCGAATCTCCTACATGTGCATTTCATATGCTCTATAAATGCGCAAAGTCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAATCTCCTACATGTGCATTTCATATGCTCTATAAATGCGCAAAGTCT  473

seq1  GTTTCAGCTTGTTCTAATGTTGCCATGTTTTAACTGCCATAGCACAGTGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCAGCTTGTTCTAATGTTGCCATGTTTTAACTGCCATAGCACAGTGG  523

seq1  TATCAACAGATAAATCAACTAGATATGCTGAAAAAAAATTATGGGCAAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAACAGATAAATCAACTAGATATGCTGAAAAAAAATTATGGGCAAGA  573

seq1  ATCCTGTTCTCTTCACCCGGCCTCATTTATCCACGAGAAGAATCTGCCTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGTTCTCTTCACCCGGCCTCATTTATCCACGAGAAGAATCTGCCTT  623

seq1  GGGAGTCACAGAGAGAAGAGGAGATATGTGGAACACAGACCAGAAAAATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTCACAGAGAGAAGAGGAGATATGTGGAACACAGACCAGAAAAATA  673

seq1  AACCAGCCCAATGATTCAATTAGGCCTGAATTTCTGGACTGTTTTCACTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGCCCAATGATTCAATTAGGCCTGAATTTCTGGACTGTTTTCACTT  723

seq1  AAATCAATGGCGATTTTCTCGAGAGCTGCCCCCTCTCTGAAGCTGGCGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAATGGCGATTTTCTCGAGAGCTGCCCCCTCTCTGAAGCTGGCGAG  773

seq1  TCCTTCTTTACAGTGTTTGCTCAGATACTCTGAATGGGACTTCTTGTTGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTTTACAGTGTTTGCTCAGATACTCTGAATGGGACTTCTTGTTGT  823

seq1  GAATCATGGGGGTTCAAGGTGCCGACTCATAATATTTTTGTATCACTTAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCATGGGGGTTCAAGGTGCCGACTCATAATATTTTTGTATCACTTAG  873

seq1  GAGGTCTTTGTTCAGATCATTCTTTTCATCTCCCAAAAGGAGGACGTTTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCTTTGTTCAGATCATTCTTTTCATCTCCCAAAAGGAGGACGTTTC  923

seq1  TAAAAGCTGTTAGAACACACATACAAAAGACCTCCACTTTCCCTCCAAGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGCTGTTAGAACACACATACAAAAGACCTCCACTTTCCCTCCAAGT  973

seq1  CTCCTCAAGTATTCTCCTGGCCTTGCTCTCAGCTTCTCATTTAGAGCGGG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCAAGTATTCTCCTGGCCTTGCTCTCAGCTTCTCATTTAGAGCGGG  1023

seq1  AGAGCAGGGAGTAGGGGCGAGGAAGGGTGCATTTACACTGGGGAAAAAGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAGGGAGTAGGGGCGAGGAAGGGTGCATTTACACTGGGGAAAAAGG  1073

seq1  CTCTGTAATCCCTGCTCCCTGAAGTGATTTACAATAGGAAATATGAATTC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTAATCCCTGCTCCCTGAAGTGATTTACAATAGGAAATATGAATTC  1123