BAC Information

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BAC

Clone NameB6Ng01-042M01
Chromosome4 (Build37)
Map Location 23,672,201 - 23,738,957
singlet/doubletdoublet
Overlap geneLOC623873
Upstream gene1700025O08Rik, LOC625462, LOC383998, LOC100040464
Downstream geneLOC664973, F730047E07Rik, Klhl32
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042M01.bB6Ng01-042M01.g
ACCDH869030DH869031
length1,0831,102
definitionDH869030|Mus musculus domesticus DNA, BAC clone: B6Ng01-042M01, 5' end.DH869031|Mus musculus domesticus DNA, BAC clone: B6Ng01-042M01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,672,201 - 23,673,291)(23,737,852 - 23,738,957)
sequence
gaattctttgccagaatagaatttatcaaaataataattttctaaaatat
gcttaaataagacattaacaagccaatttaaaaaatacttgtgttcaata
tctttatttatgatttgaaaaaagtaaatagaaatgtataggaattattt
tctgtacatgtattttacacaattactaaaaatcaaattatatgcatcat
ttgaattcaactaagtcaccttttgaaaatcataactgttctctgagtgt
tttaagtacatctatatcttatatcttgaccttaatgtgtgcttcttatt
agaagctctataaacaacacaactccaaatgtaaaaatagcattgatgat
acacccaaagacacacatatacatgcccgtgtctacacgccccccccccc
ccacatacacacacacaagcagggcaggagaagagaggagagaaaaggga
tggaaggaagacaggaggagagagattgagaaccacaagaagataagact
aatgcatacccagaggtatacaagaaaaattttctgtgccttcatacact
ggcagaaaaattctttggttgagagctggctttaaaaagtcgtcaaatag
acacatgtggtttactgtcaatctaaaattcacacaaatgctgttatgaa
gacattgtttagagttatttcactaaaactataaagatcaaggtaagact
aatatgtaatttcattctaaaagagaaatcaaagccattttcagtatcca
gttctcttattcaagttttacccatccccatttttcctaactacagcttt
tatgctcatcaataacattttctgaatataccaacaattatcaggattgc
tgggaaatgtatttcagaataagttagaaagaaataatacaattcactag
gatttattttgataatggcaaatcagtctacttagagtgacatatatagg
ttactacttttcacaattatatatctaagcagcatttgttttcaagattt
aatccagatgtttctatcacatttctatcttcacataaattttagagtct
aagtttatcttacatattttgttcttaccgttt
gaattcacaattattgtgacatgtagttaatgttggttaataacagtaga
cacagacaattaagaaaatatgcttgatcaggctaagcagtttatcgggg
acttgggcaggaataagtgtgtgtagttacgagctgcgtaaacttccttt
tgcttcttcaatgtcaccgtctcttattgtcttccagtttctgtacacta
tttgtctcatgcataataatttcctcatttcccaacctccgccccattct
agaacagctttgccttttcaactcattactgttaccaccatttaataaga
aggttttgctgggctttctaatcgaaaacttgcttttatctttcttcatg
aaagaattgaaatggcttctttcaggttgctggagcctctggggagataa
ggaccctgcggttaacaggatgagagatttttgtttagaaatttttattt
agacaatgaaaaatgacctctgtaaactcaaagctatcttattttggggc
tttaggcttctggcagataaatcaattgggccctagggacagcaaggaaa
aacctttgcagtaactatgtcagggcaacgcaatagatttgctgtgagta
tgcagttgtgttgaatgtagaatgcacttaaaaataaatatcattttatt
ttctattaaatattcaggatctgaattctcctcttttcagctgttataag
aaatatttcttttttgaggcaagctagagaaagcaattttttaaatgtat
gaactatgtggctactattggaattttgattttgactttttaattattta
cctcacattctttaatgaagtttttagatagaaatcctcaaagttacatc
cttctccttaaaaaactcagcatcaccttcattttggttaaacattttca
ttgttagctaaataatagaatagtaggttgtctaaaatatgctttgcaga
ttgctgacacatttttcacacctgctcatctgctaaaggagctttgcaga
tcctcacagcatgacttgcactgcatgtttgtctgtaagatgatattgca
cttggccaatggcttttttactggtgccatgtgaagtgccgagtcaggtg
aa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_23672201_23673291
seq2: B6Ng01-042M01.b_44_1126

seq1  GAATTCTTTGCCAGAATAGAATTTATCAAAATAATAATTTTCTAAAATAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGCCAGAATAGAATTTATCAAAATAATAATTTTCTAAAATAT  50

seq1  GCTTAAATAAGACATTAACAAGCCAATTTAAAAAATACTTGTGTTCAATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAATAAGACATTAACAAGCCAATTTAAAAAATACTTGTGTTCAATA  100

seq1  TCTTTATTTATGATTTGAAAAAAGTAAATAGAAATGTATAGGAATTATTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATTTATGATTTGAAAAAAGTAAATAGAAATGTATAGGAATTATTT  150

seq1  TCTGTACATGTATTTTACACAATTACTAAAAATCAAATTATATGCATCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTACATGTATTTTACACAATTACTAAAAATCAAATTATATGCATCAT  200

seq1  TTGAATTCAACTAAGTCACCTTTTGAAAATCATAACTGTTCTCTGAGTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTCAACTAAGTCACCTTTTGAAAATCATAACTGTTCTCTGAGTGT  250

seq1  TTTAAGTACATCTATATCTTATATCTTGACCTTAATGTGTGCTTCTTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTACATCTATATCTTATATCTTGACCTTAATGTGTGCTTCTTATT  300

seq1  AGAAGCTCTATAAACAACACAACTCCAAATGTAAAAATAGCATTGATGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCTCTATAAACAACACAACTCCAAATGTAAAAATAGCATTGATGAT  350

seq1  ACACCCAAAGACACACATATACATGCCCGTGTCTACACGCCCCCCCCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCAAAGACACACATATACATGCCCGTGTCTACACGCCCCCCCCCCC  400

seq1  CCACATACACACACACAAGCAGGGCAGGAGAAGAGAGGAGAGAAAAGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATACACACACACAAGCAGGGCAGGAGAAGAGAGGAGAGAAAAGGGA  450

seq1  TGGAAGGAAGACAGGAGGAGAGAGATTGAGAACCACAAGAAGATAAGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGAAGACAGGAGGAGAGAGATTGAGAACCACAAGAAGATAAGACT  500

seq1  AATGCATACCCAGAGGTATACAAGAAAAATTTTCTGTGCCTTCATACACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCATACCCAGAGGTATACAAGAAAAATTTTCTGTGCCTTCATACACT  550

seq1  GGCAGAAAAATTCTTTGGTTGAGAGCTGGCTTTAAAAAGTCGTCAAATAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAAAAATTCTTTGGTTGAGAGCTGGCTTTAAAAAGTCGTCAAATAG  600

seq1  ACACATGTGGTTTACTGTCAATCTAAAATTCACACAAATGCTGTTATGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGTGGTTTACTGTCAATCTAAAATTCACACAAATGCTGTTATGAA  650

seq1  GACATTGTTTAGAGTTATTTCACTAAAACTATAAAGATCAAGGTAAGACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTGTTTAGAGTTATTTCACTAAAACTATAAAGATCAAGGTAAGACT  700

seq1  AATATGTAATTTCATTCTAAAAGAGAAATCAAAGCCATTTTCAGTATCCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTAATTTCATTCTAAAAGAGAAATCAAAGCCATTTTCAGTATCCA  750

seq1  GTTCTCTTATTCAAGTTTTACCCATCCCCATTTTTCCTAACTACAGCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTTATTCAAGTTTTACCCATCCCCATTTTTCCTAACTACAGCTTT  800

seq1  TATGCTCATCAATAACATTTTCTGAATATACCAACAATTATCAGGATTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTCATCAATAACATTTTCTGAATATACCAACAATTATCAGGATTGC  850

seq1  TGGGAAATGTATTTCAGAATAAGTTAGAAAGAAATAATACAATTCACTAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAATGTATTTCAGAATAAGTTAGAAAGAAATAATACAATTCACTAG  900

seq1  GATTTATTTTGATAATGGCAAAATCAGTCTACTTAGAGTGACATATATAG  950
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GATTTATTTTGATAATGGC-AAATCAGTCTACTTAGAGTGACATATATAG  949

seq1  GTTACTACTTTTCACAATTATATTATCTAAGCAGCATTTGTTTTCAAGAT  1000
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GTTACTACTTTTCACAATTATA-TATCTAAGCAGCATTTGTTTTCAAGAT  998

seq1  TTAATCCAGATGTTTCTAATCACATTTCTAATCTCACATAAATTTTAGAA  1050
      ||||||||||||||||| ||||||||||||   ||||||||||||||| |
seq2  TTAATCCAGATGTTTCT-ATCACATTTCTATCTTCACATAAATTTTAG-A  1046

seq1  GTCTAAGTTTATCTTTACATATTTTGGTTTCTTTACCGTTT  1091
      ||||||||||||| ||||||||||||  ||| |||||||||
seq2  GTCTAAGTTTATC-TTACATATTTTG--TTC-TTACCGTTT  1083

seq1: chr4_23737852_23738957
seq2: B6Ng01-042M01.g_65_1166 (reverse)

seq1  TTCACCTTGACTCGGCACTCTACATGGCACAGGTAAAAAAGCCCATTGCC  50
      |||||| ||||||||||||  |||||||||  |||||||||||  | |||
seq2  TTCACC-TGACTCGGCACTTCACATGGCACCAGTAAAAAAGCCATTGGCC  49

seq1  AAGTGCAATATTCATCCTTAACAGAC-AACATGCAGTGCAAGTTCATGCT  99
      |||||||||| |||||  | |||||| ||||||||||||||| |||||||
seq2  AAGTGCAATA-TCATC--TTACAGACAAACATGCAGTGCAAG-TCATGCT  95

seq1  GTGAGGATCTGCAAAGCTCCTTTAGCAGATGAGCAGGTGTGAAAAATGTG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGATCTGCAAAGCTCCTTTAGCAGATGAGCAGGTGTGAAAAATGTG  145

seq1  TCAGCAATCTGCAAAGCATATTTTAGACAACCTACTATTCTATTATTTAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCAATCTGCAAAGCATATTTTAGACAACCTACTATTCTATTATTTAG  195

seq1  CTAACAATGAAAATGTTTAACCAAAATGAAGGTGATGCTGAGTTTTTTAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAATGAAAATGTTTAACCAAAATGAAGGTGATGCTGAGTTTTTTAA  245

seq1  GGAGAAGGATGTAACTTTGAGGATTTCTATCTAAAAACTTCATTAAAGAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGGATGTAACTTTGAGGATTTCTATCTAAAAACTTCATTAAAGAA  295

seq1  TGTGAGGTAAATAATTAAAAAGTCAAAATCAAAATTCCAATAGTAGCCAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGTAAATAATTAAAAAGTCAAAATCAAAATTCCAATAGTAGCCAC  345

seq1  ATAGTTCATACATTTAAAAAATTGCTTTCTCTAGCTTGCCTCAAAAAAGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTTCATACATTTAAAAAATTGCTTTCTCTAGCTTGCCTCAAAAAAGA  395

seq1  AATATTTCTTATAACAGCTGAAAAGAGGAGAATTCAGATCCTGAATATTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTCTTATAACAGCTGAAAAGAGGAGAATTCAGATCCTGAATATTT  445

seq1  AATAGAAAATAAAATGATATTTATTTTTAAGTGCATTCTACATTCAACAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAAATAAAATGATATTTATTTTTAAGTGCATTCTACATTCAACAC  495

seq1  AACTGCATACTCACAGCAAATCTATTGCGTTGCCCTGACATAGTTACTGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGCATACTCACAGCAAATCTATTGCGTTGCCCTGACATAGTTACTGC  545

seq1  AAAGGTTTTTCCTTGCTGTCCCTAGGGCCCAATTGATTTATCTGCCAGAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTTTTCCTTGCTGTCCCTAGGGCCCAATTGATTTATCTGCCAGAA  595

seq1  GCCTAAAGCCCCAAAATAAGATAGCTTTGAGTTTACAGAGGTCATTTTTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAAAGCCCCAAAATAAGATAGCTTTGAGTTTACAGAGGTCATTTTTC  645

seq1  ATTGTCTAAATAAAAATTTCTAAACAAAAATCTCTCATCCTGTTAACCGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTAAATAAAAATTTCTAAACAAAAATCTCTCATCCTGTTAACCGC  695

seq1  AGGGTCCTTATCTCCCCAGAGGCTCCAGCAACCTGAAAGAAGCCATTTCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCCTTATCTCCCCAGAGGCTCCAGCAACCTGAAAGAAGCCATTTCA  745

seq1  ATTCTTTCATGAAGAAAGATAAAAGCAAGTTTTCGATTAGAAAGCCCAGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTCATGAAGAAAGATAAAAGCAAGTTTTCGATTAGAAAGCCCAGC  795

seq1  AAAACCTTCTTATTAAATGGTGGTAACAGTAATGAGTTGAAAAGGCAAAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTTCTTATTAAATGGTGGTAACAGTAATGAGTTGAAAAGGCAAAG  845

seq1  CTGTTCTAGAATGGGGCGGAGGTTGGGAAATGAGGAAATTATTATGCATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTAGAATGGGGCGGAGGTTGGGAAATGAGGAAATTATTATGCATG  895

seq1  AGACAAATAGTGTACAGAAACTGGAAGACAATAAGAGACGGTGACATTGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAATAGTGTACAGAAACTGGAAGACAATAAGAGACGGTGACATTGA  945

seq1  AGAAGCAAAAGGAAGTTTACGCAGCTCGTAACTACACACACTTATTCCTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAAAAGGAAGTTTACGCAGCTCGTAACTACACACACTTATTCCTG  995

seq1  CCCAAGTCCCCGATAAACTGCTTAGCCTGATCAAGCATATTTTCTTAATT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAGTCCCCGATAAACTGCTTAGCCTGATCAAGCATATTTTCTTAATT  1045

seq1  GTCTGTGTCTACTGTTATTAACCAACATTAACTACATGTCACAATAATTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGTCTACTGTTATTAACCAACATTAACTACATGTCACAATAATTG  1095

seq1  TGAATTC  1106
      |||||||
seq2  TGAATTC  1102