BAC Information

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BAC

Clone NameB6Ng01-042M03
Chromosome4 (Build37)
Map Location 27,450,346 - 27,563,105
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100040691, Tpm3-rs2, LOC100040842, LOC100040735, LOC230044, LOC665141, LOC100040773
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-042M03.bB6Ng01-042M03.g
ACCDH869034DH869035
length1,0571,012
definitionDH869034|Mus musculus domesticus DNA, BAC clone: B6Ng01-042M03, 5' end.DH869035|Mus musculus domesticus DNA, BAC clone: B6Ng01-042M03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,562,041 - 27,563,105)(27,450,346 - 27,451,368)
sequence
gaattctcctctctgggccatataatctaggcccaaccatttaatgaaaa
agttcaacaggagcactggggactaaaggcatgcctttgaagaagcatat
gcaactgtgtgattgaatttttctttacttgttaacatccacacttagtt
tctcaaaaccataaatcaggtcctcaaatgtccttcaaaatgttggatga
aagggatgaaagcaatactttatttccaaccgcaattcacagttagatgg
taaaatatagggtttgtggtcagtcaaacttttgattttatggattttag
atcaaactcactgctttctgcttcatgtttgggcaccattcaagccaaag
ctttgaggcttttagaccgtgtaaaacaccaggtagccagtcaaaggata
aagaattcagtgcaagtcagattggtgcattcatttcaaaagcatagtca
ccttcaagccatcgggatgtggcacgaagttgcctacttcttttgtttct
acaaaggcaatcataggtcttttaaactgtttgctaacttctcttcctga
taacaataagtttatgagaaaatattgaaattgaccgccttcaacacaga
gcaatggttacaaattaacttaaagaagtcctgtcagattccatgatctg
attgcttaaaatataaataatgataaaaatgtagctttaaatttttattt
taaatagcctagattatccttgaaagctcaaggtttagtgtttaacttat
atgttgtctgaaccaatccactaaaacattctttaaaggaaataatatgc
tttgtatcctataatgtgtgctccttcattgttttcaattattctatcaa
attgaacttcctttactttggaataaagcacattttataagatatatgta
cctatagaacagcttgtgtaatttccttgtacaataggatgaactcttgc
ggttgggctaattattattgtttcattgcaattaatatatgtgtacaagc
tctaagacaaaaatgttttcaagaaaggtaagtaagaaggccagaattct
ttggagg
gaattccaaagtgactggttacaacatatcttcacatttaagctgtcatc
agttaggattttccagaaatatattcattgtgggtattgttactgtttcg
gggaaataaaaactatctcaatctgaaaatagcaagctcacctctataaa
tcaaagtttatcttacaccacacccagtatcattgttttctccatttaaa
gttctttttaaattatagatactattattaaagagaagacccctttaaac
gtgttagtttacaaaatacttaaaatcaataatatttccttatatcccca
cattgtactcaatttaatgactgaagttaccagaatttacagcacataga
atttatgctcctaaaagtcacctttatcaaaaggccttacttgtttttat
tttaaagatttagtctgattgatttatatcatgtaaatactgatttctga
acattatctcttgaaaatgaagtattaatttgtaaaattatgaatcaaaa
ttgcctataaagattatttttacagctcttattgaatcttgaaatagctt
tctcttttctttttttaacaatagctagtattttggaaggaaatagttat
gtgctcatgaaaattacctgtatatttctaatttgatgttcacttttcag
attgtattttattattttaattacatttctccctttcctttccaccttcc
aaactctccagtatgacctccatctctttcagcatcctggccttttaatt
tcatgaactattattggatacatatattttatatttacatactgttttta
cataaacttttgagtctatataattctacttggatgtttacagggctgac
catgtgtccctggaaaaccagttgatatgctcttctctgggaaagaccat
ttctctgttcaggtctctcagctgctattgctctttgtgtaggttgatgc
ctatgtgcttgctcaccctggtgtattttccaggtcattgggctgtctcg
ttcagtcacatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_27562041_27563105
seq2: B6Ng01-042M03.b_39_1095 (reverse)

seq1  CCTCCAAAGAATACTGGGCCCTTCTTTACCTTACCTTTCTTTGAAAACAT  50
      |||||||||||| ||||  |||||||   |||||||||| ||||||||||
seq2  CCTCCAAAGAATTCTGG--CCTTCTT--ACTTACCTTTC-TTGAAAACAT  45

seq1  ATTTTGTCTTAGAGCTTGTACACATATATTTAACTGCAATGAAACAATAA  100
       ||||||||||||||||||||||||||| |||| ||||||||||||||||
seq2  -TTTTGTCTTAGAGCTTGTACACATATA-TTAATTGCAATGAAACAATAA  93

seq1  TAAATAGGCCAACTGCAAGAGTTCATCCTATTGTACAAGGAAATTACACA  150
      ||| ||| ||||| ||||||||||||||||||||||||||||||||||||
seq2  TAATTAGCCCAACCGCAAGAGTTCATCCTATTGTACAAGGAAATTACACA  143

seq1  AGCTGTTTCTATAGGTACATATATCTTATAAAATGTGCTTTATTCCAAAG  200
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTG-TTCTATAGGTACATATATCTTATAAAATGTGCTTTATTCCAAAG  192

seq1  TAAAGGAAGTTCAATTTGATAGAATAATTGAAAACAATGAAGGAGCACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGAAGTTCAATTTGATAGAATAATTGAAAACAATGAAGGAGCACAC  242

seq1  ATTATAGGATACAAAGCATATTATTTCCTTTAAAGAATGTTTTAGTGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAGGATACAAAGCATATTATTTCCTTTAAAGAATGTTTTAGTGGAT  292

seq1  TGGTTCAGACAACATATAAGTTAAACACTAAACCTTGAGCTTTCAAGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCAGACAACATATAAGTTAAACACTAAACCTTGAGCTTTCAAGGAT  342

seq1  AATCTAGGCTATTTAAAATAAAAATTTAAAGCTACATTTTTATCATTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAGGCTATTTAAAATAAAAATTTAAAGCTACATTTTTATCATTATT  392

seq1  TATATTTTAAGCAATCAGATCATGGAATCTGACAGGACTTCTTTAAGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTTAAGCAATCAGATCATGGAATCTGACAGGACTTCTTTAAGTTA  442

seq1  ATTTGTAACCATTGCTCTGTGTTGAAGGCGGTCAATTTCAATATTTTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTAACCATTGCTCTGTGTTGAAGGCGGTCAATTTCAATATTTTCTC  492

seq1  ATAAACTTATTGTTATCAGGAAGAGAAGTTAGCAAACAGTTTAAAAGACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTTATTGTTATCAGGAAGAGAAGTTAGCAAACAGTTTAAAAGACC  542

seq1  TATGATTGCCTTTGTAGAAACAAAAGAAGTAGGCAACTTCGTGCCACATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTGCCTTTGTAGAAACAAAAGAAGTAGGCAACTTCGTGCCACATC  592

seq1  CCGATGGCTTGAAGGTGACTATGCTTTTGAAATGAATGCACCAATCTGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGATGGCTTGAAGGTGACTATGCTTTTGAAATGAATGCACCAATCTGAC  642

seq1  TTGCACTGAATTCTTTATCCTTTGACTGGCTACCTGGTGTTTTACACGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACTGAATTCTTTATCCTTTGACTGGCTACCTGGTGTTTTACACGGT  692

seq1  CTAAAAGCCTCAAAGCTTTGGCTTGAATGGTGCCCAAACATGAAGCAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAGCCTCAAAGCTTTGGCTTGAATGGTGCCCAAACATGAAGCAGAA  742

seq1  AGCAGTGAGTTTGATCTAAAATCCATAAAATCAAAAGTTTGACTGACCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGAGTTTGATCTAAAATCCATAAAATCAAAAGTTTGACTGACCAC  792

seq1  AAACCCTATATTTTACCATCTAACTGTGAATTGCGGTTGGAAATAAAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTATATTTTACCATCTAACTGTGAATTGCGGTTGGAAATAAAGTA  842

seq1  TTGCTTTCATCCCTTTCATCCAACATTTTGAAGGACATTTGAGGACCTGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTTCATCCCTTTCATCCAACATTTTGAAGGACATTTGAGGACCTGA  892

seq1  TTTATGGTTTTGAGAAACTAAGTGTGGATGTTAACAAGTAAAGAAAAATT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGGTTTTGAGAAACTAAGTGTGGATGTTAACAAGTAAAGAAAAATT  942

seq1  CAATCACACAGTTGCATATGCTTCTTCAAAGGCATGCCTTTAGTCCCCAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCACACAGTTGCATATGCTTCTTCAAAGGCATGCCTTTAGTCCCCAG  992

seq1  TGCTCCTGTTGAACTTTTTCATTAAATGGTTGTGCCTAGATTATATGGCC  1050
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGCTCCTGTTGAACTTTTTCATTAAATGGTTGGGCCTAGATTATATGGCC  1042

seq1  CAGAGAGGAGAATTC  1065
      |||||||||||||||
seq2  CAGAGAGGAGAATTC  1057

seq1: chr4_27450346_27451368
seq2: B6Ng01-042M03.g_64_1075

seq1  GAATTCCAAAGTGACTGGTTACAACATATCTTCACATTTAAGCTGTCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAGTGACTGGTTACAACATATCTTCACATTTAAGCTGTCATC  50

seq1  AGTTAGGATTTTCCAGAAATATATTCATTGTGGGTATTGTTACTGTTTCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAGGATTTTCCAGAAATATATTCATTGTGGGTATTGTTACTGTTTCG  100

seq1  GGGAAATAAAAACTATCTCAATCTGAAAATAGCAAGCTCACCTCTATAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAATAAAAACTATCTCAATCTGAAAATAGCAAGCTCACCTCTATAAA  150

seq1  TCAAAGTTTATCTTACACCACACCCAGTATCATTGTTTTCTCCATTTAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTTTATCTTACACCACACCCAGTATCATTGTTTTCTCCATTTAAA  200

seq1  GTTCTTTTTAAATTATAGATACTATTATTAAAGAGAAGACCCCTTTAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTTTAAATTATAGATACTATTATTAAAGAGAAGACCCCTTTAAAC  250

seq1  GTGTTAGTTTACAAAATACTTAAAATCAATAATATTTCCTTATATCCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAGTTTACAAAATACTTAAAATCAATAATATTTCCTTATATCCCCA  300

seq1  CATTGTACTCAATTTAATGACTGAAGTTACCAGAATTTACAGCACATAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTACTCAATTTAATGACTGAAGTTACCAGAATTTACAGCACATAGA  350

seq1  ATTTATGCTCCTAAAAGTCACCTTTATCAAAAGGCCTTACTTGTTTTTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGCTCCTAAAAGTCACCTTTATCAAAAGGCCTTACTTGTTTTTAT  400

seq1  TTTAAAGATTTAGTCTGATTGATTTATATCATGTAAATACTGATTTCTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGATTTAGTCTGATTGATTTATATCATGTAAATACTGATTTCTGA  450

seq1  ACATTATCTCTTGAAAATGAAGTATTAATTTGTAAAATTATGAATCAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATCTCTTGAAAATGAAGTATTAATTTGTAAAATTATGAATCAAAA  500

seq1  TTGCCTATAAAGATTATTTTTACAGCTCTTATTGAATCTTGAAATAGCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTATAAAGATTATTTTTACAGCTCTTATTGAATCTTGAAATAGCTT  550

seq1  TCTCTTTTCTTTTTTTAACAATAGCTAGTATTTTGGAAGGAAATAGTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTTCTTTTTTTAACAATAGCTAGTATTTTGGAAGGAAATAGTTAT  600

seq1  GTGCTCATGAAAATTACCTGTATATTTCTAATTTGATGTTCACTTTTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTCATGAAAATTACCTGTATATTTCTAATTTGATGTTCACTTTTCAG  650

seq1  ATTGTATTTTATTATTTTAATTACATTTCTCCCTTTCCTTTCCACCTTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATTTTATTATTTTAATTACATTTCTCCCTTTCCTTTCCACCTTCC  700

seq1  AAACTCTCCAGTATGACCTCCATCTCTTTCAGCATCCTGGCCTTTTAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCTCCAGTATGACCTCCATCTCTTTCAGCATCCTGGCCTTTTAATT  750

seq1  TCATGAACTATTATTGGATACATATATTTTATATTTACATACTGTTTTTT  800
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCATGAACTATTATTGGATACATATATTTTATATTTACATACTG-TTTTT  799

seq1  ACATAAACTTTTGAGTCTATATAATTCTACTTGGATGTTTACAGGGCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAACTTTTGAGTCTATATAATTCTACTTGGATGTTTACAGGGCTGA  849

seq1  CCATGTGTCCCTGGAAAACCAGTTGATATGCTCTTCTCTGGGAAAGACCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGTCCCTGGAAAACCAGTTGATATGCTCTTCTCTGGGAAAGACCA  899

seq1  TTTCTCTTGTTCCAGGTCTCCTCAGCTGCCTATTGCTCTTTGTGTAGGTT  950
      |||||| |||| ||||||| |||||||| ||||||||||||||||||| |
seq2  TTTCTC-TGTT-CAGGTCT-CTCAGCTG-CTATTGCTCTTTGTGTAGG-T  944

seq1  TGATGCCCTATGTGCTTGCTCACCCT-GTGTATTTTTCCAGGTTCATTGG  999
      ||||| |||||||||||||||||||| ||||| ||||||||| ||||| |
seq2  TGATG-CCTATGTGCTTGCTCACCCTGGTGTA-TTTTCCAGG-TCATT-G  990

seq1  GGCTGTCCTCGTTCAGTTCACATT  1023
      |||||| ||||||||| |||||||
seq2  GGCTGT-CTCGTTCAG-TCACATT  1012