BAC Information

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BAC

Clone NameB6Ng01-043M08
Chromosome4 (Build37)3 (Build37)
Map Location 34,672,704 - 34,672,88729,400,342 - 29,401,144
singlet/doubletsingletsinglet
Overlap gene1700003M02Rik
Upstream geneLOC100041919, LOC100041924, Cnr1, Spaca1, LOC100039220, LOC665361, LOC665367, 2700059D21Rik, Orc3l, Rars2, Slc35a1
Downstream geneGm136, 1810030N24Rik, Zfp292, Cga, Mobkl2b, Ifnk, 3110043O21Rik, LOC620559, LOC621227, Lingo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-043M08.bB6Ng01-043M08.g
ACCDH869733DH869734
length656120
definitionDH869733|Mus musculus domesticus DNA, BAC clone: B6Ng01-043M08, 5' end.DH869734|Mus musculus domesticus DNA, BAC clone: B6Ng01-043M08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(34,672,704 - 34,672,887)(29,400,342 - 29,401,144)
sequence
gaattctaggcatccaaattcctgtgttcaagattgcagagtaagccctt
tgtccattgagaaatctactcatgatcctattattataaaatgatttata
gaaaaatactacatgtataggcagaaaaaattaaacttatattactcgtt
aaaactggatgcattctttacttttttatgacctttcaaggcagaaatgt
aatcaatagtcttacccattgtgaactctgttaactacagactttgacaa
ctgaccttgtaatttatgtccattagttcacactttttctactgcctgta
aatccagatatagaacactcagttacctctctagcaccatgtcttcctgc
atgacttcacgcttcctgttctgattaaatggactctaaattgtaagcca
agctcaatgaaatgttttcctatataagagctgctgtgttcatagtataa
tttcacaacaataagaagatgttccaggacagaagaatggatacagaaaa
tgtggttaatttacacaatggaatactactcagctattaagaatgaagac
atcctgacttttgcaggcaaatggaaatatcctgagttacctgagtgagg
taactcagatgcaagaggacatgcatgttatgcactcactaataagtgga
tattag
cagaaattcatggagcacctagcctaaagtacgaaactgtaaaatgtggg
agatactttataaaacaaggtagaaggcttgggctatatgtgtgtgtgtg
tgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_34672704_34672887
seq2: B6Ng01-043M08.b_523_701 (reverse)

seq1  CTAATATCCACTTATTAGTGAGTGCACACCATCCATGTCATTTTGGGTCT  50
      |||||||||||||||||||||||||| | ||| |||||| | |||  |||
seq2  CTAATATCCACTTATTAGTGAGTGCATAACATGCATGTCCTCTTGCATCT  50

seq1  GAGTTACCTCACTCAGGATGATGCCCTCCAGGTCCATCCATTTGCCTGCA  100
      ||||||||||||||||| | |    |||  | |   ||||||||||||||
seq2  GAGTTACCTCACTCAGG-TAA----CTCAGGATATTTCCATTTGCCTGCA  95

seq1  AAACTTAGGATGTCCTCATTCTTAATAGCTGAGTAGTATTCCATTGTGTA  150
      ||| | |||||||| |||||||||||||||||||||||||||||||||||
seq2  AAAGTCAGGATGTCTTCATTCTTAATAGCTGAGTAGTATTCCATTGTGTA  145

seq1  AATGAGCCACATTTTATGTAACCATTCTTCTGTC  184
      ||| | ||||||||| |||| |||||||||||||
seq2  AATTAACCACATTTTCTGTATCCATTCTTCTGTC  179

seq1: chr3_29400342_29401144
seq2: B6Ng01-043M08.g_128_193 (reverse)

seq1  CACACACACACACACACACACACACACACACACACACAGAGAGAGAGAGA  50
            |||||||||||||||||||||||||||||||| | ||    || 
seq2  ------CACACACACACACACACACACACACACACACATATAGCCCAAGC  44

seq1  GAGAGAGAGATCAATGTTATATGTAAAGTAGACACTGAACACTAATATTA  100
           |     |  |||| ||  ||||||                     
seq2  CTTCTA-----CCTTGTTTTA--TAAAGT---------------------  66

seq1  CATCTGTGGCTACCATCTTCTTGTGATTCCAGATCATTTAGGAAGCCAGC  150
                                                        
seq2  --------------------------------------------------  66

seq1  CAAGGGACGATTTTGGGATAATACATTGTGCTTCACTCTCTAGAGGCTCA  200
                                                        
seq2  --------------------------------------------------  66

seq1  TGTGACTTAATAACCCACTGTTCCTCTTTCTTTCTTCCTTCTTTTCTCTC  250
                                                        
seq2  --------------------------------------------------  66

seq1  TCCCTCCCTCCCTTCCTCACTCTTCCCTTTCTCCCTTCCTCCTTCCTTCC  300
                                                        
seq2  --------------------------------------------------  66

seq1  TTTCTTCTTGCTTGCTTGCTTCCTTTCCTTCTTTTCTTTCTTTTCTGAAT  350
                                                        
seq2  --------------------------------------------------  66

seq1  GCTAGAATGATTTGCTTTTGAGAACCTCACACATGGGTAATACATCTATG  400
                                                        
seq2  --------------------------------------------------  66

seq1  ACTTGCCTATCTCCTTCCTCCCCATCTATCTCTTCTAGTGTCCCACTCCA  450
                                                        
seq2  --------------------------------------------------  66

seq1  AAATCCATAACCTCGTCTTTAATCATTTTTGTTATATGTATTTATGTATA  500
                                                        
seq2  --------------------------------------------------  66

seq1  CACACACACATCTACCAAGTACATCTTGTGTTGCCAATATATAAATGGTC  550
                                                        
seq2  --------------------------------------------------  66

seq1  CATGACTGCCATTTTTGATTGGACAAACTCTGTGGGACCTATCACTAGAG  600
                                                        
seq2  --------------------------------------------------  66

seq1  GAGATTGATTCTCTGTCTCAGGAAAACTGATCACCTTTAGCTCCTAACAC  650
                                                        
seq2  --------------------------------------------------  66

seq1  TGTTCAGGGATGGAAATTTCTTGGTCACAATGATGACTCAAGTGATTTAT  700
                                                        
seq2  --------------------------------------------------  66

seq1  TCAATTTTATTAGTTATAAGTTATACTTTGTCTCCCTAATTTGTAAACTT  750
                                                        
seq2  --------------------------------------------------  66

seq1  CAAATGCTACTCTGAGTGAGAAAATTTTAATCAAAATGTCTGTTTTATAA  800
                                                        
seq2  --------------------------------------------------  66

seq1  AGT  803
         
seq2  ---  66