BAC Information

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BAC

Clone NameB6Ng01-044I08
Chromosome4 (Build37)
Map Location 120,421,814 - 120,597,619
singlet/doubletdoublet
Overlap geneNfyc, Rims3, LOC626489, 3110037I16Rik
Upstream geneHivep3, Edn2, Foxo6, Scmh1, Slfnl1, Ctps, EG667063, Cited4, Kcnq4
Downstream geneZfp69, Smap1l, Col9a2, Zmpste24, Tmco2, LOC100042174, Rlf, OTTMUSG00000008911, EG666914, LOC666921, LOC666927
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044I08.bB6Ng01-044I08.g
ACCDH870250DH870251
length4671,076
definitionDH870250|Mus musculus domesticus DNA, BAC clone: B6Ng01-044I08, 5' end.DH870251|Mus musculus domesticus DNA, BAC clone: B6Ng01-044I08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,421,814 - 120,422,280)(120,596,527 - 120,597,619)
sequence
gaattcaaattacacaacggaaagtggctgctggggtcttttgaggcttt
gatcttagctgaaacggaacttgaattcaggttgcccttatcagcacttg
ggatatctaaaattgggtctgttctgggaaatctgatcctccagttgagt
gccacctatgaacccatgctccccttctcgtgtgggtgattgccaagctt
cccttctctctgtgaatggaactccgcaggagagggtcctcgtcattttt
tccagttcatggcctatattaccccatccaaggctgggggaaggtaagag
aactgtagttcctgttgggatggaagctagatttcagaagcacctacaga
ggtcccagaggctatctttgaaggtcagcacctcgtggagggtcatgtgc
attgatagtaagaggagggagacaagagagagttcttcctagggtgtggt
gtgtgtgtgtgtgtgtt
gaattctgggacaggggtgaagagctaaggggctgcccctttcaggcacg
cccctcattcgggtttttgttctgtgcattttgggcccgcgattgagtct
ttgcgcttgggcacaccagggggactggggctgggggctgagtggaaagc
acacgcctgcctgcgtggaaggcctgtaacgagtcaggacgcagaggatg
aaggcagcagcaggcagccggaagccatcagcaaggcagggcctccgacc
tcaggctgcggctgggaacctggagagcagaacttaccgcctggagacct
tacccttggagaggccagtgttaggaggatttatgacacgcagctgccct
agcagtgtgactcaagtggaaacaccataatgtgaaggagtggtcaggtg
aagagaacagaagtccacattccatcatagcaaggtgcctccccatctcc
cctcgttttaatacatgctcttccctgtgaggagggaaatcaactaaggc
ccaggtgagtacgagttgcctctctcctgaacttttcagagcaaatagat
acatagtagacccatcaatgcctttggaaggaaagccacatttattgtgt
gttagttaatatctgtactgttttagctctgtgggcattgaaggattagc
ttaccagtatacattttaaagatgtgccagtctcatcagagaatttttga
aatgtgcccaagattattcaagaaacaaatagcagaaccgggcgtggtgg
tgcacgcctttaatcccagcactcaggaggcagaggcaggcggatttctg
agttcgaggccagctctggtctagagtgagttccaggacagccagggcta
cacagagaaaccctgtctcgaaaaaccagaaataagaaagaaagaaacaa
caacaaatagcataccagcaaattctactggacgtttcagattagattca
aatctgtatcttcaggatccctagactctgatgccgatctgggtatttct
gaacatctatcctcattattttcactaatatttcagctttatctgtttaa
acttaaaacataatcatatataaaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_120421814_120422280
seq2: B6Ng01-044I08.b_43_509

seq1  GAATTCAAATTACACAACGGAAAGTGGCTGCTGGGGTCTTTTGAGGCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATTACACAACGGAAAGTGGCTGCTGGGGTCTTTTGAGGCTTT  50

seq1  GATCTTAGCTGAAACGGAACTTGAATTCAGGTTGCCCTTATCAGCACTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTAGCTGAAACGGAACTTGAATTCAGGTTGCCCTTATCAGCACTTG  100

seq1  GGATATCTAAAATTGGGTCTGTTCTGGGAAATCTGATCCTCCAGTTGAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATATCTAAAATTGGGTCTGTTCTGGGAAATCTGATCCTCCAGTTGAGT  150

seq1  GCCACCTATGAACCCATGCTCCCCTTCTCGTGTGGGTGATTGCCAAGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCTATGAACCCATGCTCCCCTTCTCGTGTGGGTGATTGCCAAGCTT  200

seq1  CCCTTCTCTCTGTGAATGGAACTCCGCAGGAGAGGGTCCTCGTCATTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTCTCTGTGAATGGAACTCCGCAGGAGAGGGTCCTCGTCATTTTT  250

seq1  TCCAGTTCATGGCCTATATTACCCCATCCAAGGCTGGGGGAAGGTAAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTCATGGCCTATATTACCCCATCCAAGGCTGGGGGAAGGTAAGAG  300

seq1  AACTGTAGTTCCTGTTGGGATGGAAGCTAGATTTCAGAAGCACCTACAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTAGTTCCTGTTGGGATGGAAGCTAGATTTCAGAAGCACCTACAGA  350

seq1  GGTCCCAGAGGCTATCTTTGAAGGTCAGCACCTCGTGGAGGGTCATGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCAGAGGCTATCTTTGAAGGTCAGCACCTCGTGGAGGGTCATGTGC  400

seq1  ATTGATAGTAAGAGGAGGGAGACAAGAGAGAGTTCTTCCTAGGGTGTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATAGTAAGAGGAGGGAGACAAGAGAGAGTTCTTCCTAGGGTGTGGT  450

seq1  GTGTGTGTGTGTGTGTT  467
      |||||||||||||||||
seq2  GTGTGTGTGTGTGTGTT  467

seq1: chr4_120596527_120597619
seq2: B6Ng01-044I08.g_68_1143 (reverse)

seq1  ATTTTATATATGAATATATGTTTTAAAAGTTTTAAAACAGATAAAGCTGA  50
      |||||||||||||   ||||||||  ||||||  ||||||||||||||||
seq2  ATTTTATATATGA--TTATGTTTT--AAGTTT--AAACAGATAAAGCTGA  44

seq1  AAATTATTAGGTGAAAAATTAAATGA-GATAGATGTTCAGAAAATACCAG  99
      ||  ||||| |||||||    ||||| ||||||||||||||||   ||||
seq2  AA--TATTA-GTGAAAA---TAATGAGGATAGATGTTCAGAAATACCCAG  88

seq1  ATCGGCATCAAGAGTCTAGGGATCCTGAAGATACAGATTTTGAATCTAAT  149
      ||||||||| ||||||||||||||||||||||||||| ||||||||||||
seq2  ATCGGCATC-AGAGTCTAGGGATCCTGAAGATACAGA-TTTGAATCTAAT  136

seq1  CTTGAAACGTCCAGTAGAATTTGCTGGTATGCTATTTGTTTGTTTGTTTC  199
      | ||||||||||||||||||||||||||||||||||||||   |||||||
seq2  C-TGAAACGTCCAGTAGAATTTGCTGGTATGCTATTTGTT--GTTGTTTC  183

seq1  TTTCTTTCTTTATTTTCTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCC  249
      ||||||||||   |||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTT--ATTTCTGGTTTTTCGAGACAGGGTTTCTCTGTGTAGCC  231

seq1  CTGGCTGTCCTGGAACTCACTCTAGACCAG-GCTGGCCTCGAACTCAGAA  298
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CTGGCTGTCCTGGAACTCACTCTAGACCAGAGCTGGCCTCGAACTCAGAA  281

seq1  ATCCGCCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGCGTGCACCACC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGCCTGCCTCTGCCTCCTGAGTGCTGGGATTAAAGGCGTGCACCACC  331

seq1  ACGCCCGGTTCTGCTATTTGTTTCTTGAATAATCTTGGGCACATTTCAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCCCGGTTCTGCTATTTGTTTCTTGAATAATCTTGGGCACATTTCAAA  381

seq1  AATTCTCTGATGAGACTGGCACATCTTTAAAATGTATACTGGTAAGCTAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCTGATGAGACTGGCACATCTTTAAAATGTATACTGGTAAGCTAA  431

seq1  TCCTTCAATGCCCACAGAGCTAAAACAGTACAGATATTAACTAACACACA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCAATGCCCACAGAGCTAAAACAGTACAGATATTAACTAACACACA  481

seq1  ATAAATGTGGCTTTCCTTCCAAAGGCATTGATGGGTCTACTATGTATCTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATGTGGCTTTCCTTCCAAAGGCATTGATGGGTCTACTATGTATCTA  531

seq1  TTTGCTCTGAAAAGTTCAGGAGAGAGGCAACTCGTACTCACCTGGGCCTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTCTGAAAAGTTCAGGAGAGAGGCAACTCGTACTCACCTGGGCCTT  581

seq1  AGTTGATTTCCCTCCTCACAGGGAAGAGCATGTATTAAAACGAGGGGAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGATTTCCCTCCTCACAGGGAAGAGCATGTATTAAAACGAGGGGAGA  631

seq1  TGGGGAGGCACCTTGCTATGATGGAATGTGGACTTCTGTTCTCTTCACCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGGCACCTTGCTATGATGGAATGTGGACTTCTGTTCTCTTCACCT  681

seq1  GACCACTCCTTCACATTATGGTGTTTCCACTTGAGTCACACTGCTAGGGC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACTCCTTCACATTATGGTGTTTCCACTTGAGTCACACTGCTAGGGC  731

seq1  AGCTGCGTGTCATAAATCCTCCTAACACTGGCCTCTCCAAGGGTAAGGTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCGTGTCATAAATCCTCCTAACACTGGCCTCTCCAAGGGTAAGGTC  781

seq1  TCCAGGCGGTAAGTTCTGCTCTCCAGGTTCCCAGCCGCAGCCTGAGGTCG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGCGGTAAGTTCTGCTCTCCAGGTTCCCAGCCGCAGCCTGAGGTCG  831

seq1  GAGGCCCTGCCTTGCTGATGGCTTCCGGCTGCCTGCTGCTGCCTTCATCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCCTGCCTTGCTGATGGCTTCCGGCTGCCTGCTGCTGCCTTCATCC  881

seq1  TCTGCGTCCTGACTCGTTACAGGCCTTCCACGCAGGCAGGCGTGTGCTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCGTCCTGACTCGTTACAGGCCTTCCACGCAGGCAGGCGTGTGCTTT  931

seq1  CCACTCAGCCCCCAGCCCCAGTCCCCCTGGTGTGCCCAAGCGCAAAGACT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCAGCCCCCAGCCCCAGTCCCCCTGGTGTGCCCAAGCGCAAAGACT  981

seq1  CAATCGCGGGCCCAAAATGCACAGAACAAAAACCCGAATGAGGGGCGTGC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCGCGGGCCCAAAATGCACAGAACAAAAACCCGAATGAGGGGCGTGC  1031

seq1  CTGAAAGGGGCAGCCCCTTAGCTCTTCACCCCTGTCCCAGAATTC  1093
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGGGGCAGCCCCTTAGCTCTTCACCCCTGTCCCAGAATTC  1076