BAC Information

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BAC

Clone NameB6Ng01-044O17
Chromosome4 (Build37)
Map Location 49,584,676 - 49,714,800
singlet/doubletdoublet
Overlap gene2810432L12Rik, LOC100040742, Rnf20, Ppp3r2
Upstream geneTmeff1, 2310039E09Rik, E130309F12Rik, LOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2, LOC230161, Baat, Mrpl50, Zfp189, Aldob
Downstream geneLOC666663
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044O17.bB6Ng01-044O17.g
ACCDH870531DH870532
length1,192752
definitionDH870531|Mus musculus domesticus DNA, BAC clone: B6Ng01-044O17, 5' end.DH870532|Mus musculus domesticus DNA, BAC clone: B6Ng01-044O17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,713,592 - 49,714,800)(49,584,676 - 49,585,240)
sequence
gaattcccaacaggatgcagctctgcctgcctgtttgacatctcctcttg
aatatcctacaggcatctcagatttcacttgtcagaagtctaagccgcag
tgttccctctttgcttgcttttcctcctgggctttgcagtcttggcggtg
gtacttctgcgcacctacccatacattcagactgccacaggtgctcacac
ctctcttgtccaccttttccaatcaccaacaagccgaatcttctacaaat
taggcctcagataatagccgtctattgtcaactccagtgtccccgctctg
tccaagctgtcatccctcacctggctcactacagacgtctgctaagaggt
ctgttttgcacctgccttcctttagttgccttccactcattcttctgttt
gtcagccatgttctctgggacaaaatctgaaatggctgaaacggcgacat
gccctgtgatacctggccttgatcacttctcagtgccctcttgggccact
ctctggttcatcccagctgtgccatgtttctcatagaatgaagataaatc
catgggttccctgccttggattccctaaacttgcaattgtctcttccctc
tcaaatgctcttctccactggcatttgctcagctaatgccttcatattac
aaagccccagcgaaggaactgcagatgtagttcagtatggtacagtacct
gcctagcatgtccaaggcctttgatttgatcccaatgctacaaaataaat
aaataaataaataaataaataaataaaccgaagagtcaacagaacaaact
cacagctagtatctctcttttcgaatcccaacagaagctgaccaatataa
atcaacctccttttatgatctcatatatctcatattacttaatagcactc
agtaataacataaacattacgccttaaacataattttaatcagagtattt
tatgcatctcttcttaatgtatattaaactatagaactctagggaaaaaa
gaaaacctgtcttaaatttcagtgcctcctaataaagtagacccccgaga
gtcacgtagataatcagaaaaacttagacatgtacctgaaaggaacccgt
caatagaactcccatgagaactgtggcatgtgtggcaggcctgcacagtt
tagaacagaatggtttcagcggaagggtgtggtccaagtccc
gaattcaaagggcttttcagggattatataaaggctaaggccctgggtgt
ggacatattgttgttgggttggttgatggttgctgttggtcacagggtgt
cttctattcctggacaaaacatcacgaccaagaagcagttggggaggaaa
gggtttattcagcttacacttccatactgctcttcatcaccaaggaagtc
aggactggaactcaagcaggtcagacagcaggagctgatgcagaggccat
ggaaggatgttctttactggcttgcttcccctggcttgctcagtttgctt
tcttatagaacctaagactaccagcccagagatggcaccacccacaaggg
gacctccccacttgatcactaactgagaaaatgccttacagctggatctc
gtggagtcatttccccaactgaagctcctttctctgtgataacttcagcc
tgtgtcaagttgacacaaaactagccagtacatagggtgtgttaagtagc
tgtgcacaaagaagaaagaagtaattagatatcctgaaggccaagaccac
attgttccctttcctttctatccttttatttctctcctttctagtattag
agggttgaaagggggagaagggtggaagaaagaagaagaatccacaaagt
agcaaaagatggcttataatagtttctggggaaaaagctgactgtggcta
cagagacaacggcagtgttgtgatttcaccgttggctccggtcatgtagg
ct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_49713592_49714800
seq2: B6Ng01-044O17.b_47_1238 (reverse)

seq1  GGGACTTGTGTCCACACCCCTCTCAGCATTGGGACCCCATCTGTCTTAAA  50
      |||||||| | ||||||||   || ||    | | ||  |||||  ||||
seq2  GGGACTTG-GACCACACCC--TTCCGC---TGAAACCATTCTGTTCTAAA  44

seq1  CTGGTGCAGGCTGTGCACACACTGCCACAG-TCTC-TGTGAGTTTCTATT  98
      || ||||||||    |||||| |||||||| |||| || ||| |||||||
seq2  CT-GTGCAGGCCTGCCACACA-TGCCACAGTTCTCATGGGAG-TTCTATT  91

seq1  GACCGTGTTTCTTTTCAGGTACATTGTCT-AGTTTTTCTGATTTATCTAC  147
      |||   | ||| ||||||||||| ||||| ||||||||||| ||||||||
seq2  GAC--GGGTTCCTTTCAGGTACA-TGTCTAAGTTTTTCTGA-TTATCTAC  137

seq1  GTGACTTCTCGAGTGTCTACTTTATTTGGAGGCACTGGAAATTTAAGACA  197
      ||||| ||||| | |||||||||||| ||||||||| |||||||||||||
seq2  GTGAC-TCTCGGGGGTCTACTTTATTAGGAGGCACT-GAAATTTAAGACA  185

seq1  GGTTTTTCTTTTTTTCCCTAGAGTTCTTATAGTTTAATATACATTAAGAA  247
      ||||||   ||||||||||||||||| |||||||||||||||||||||||
seq2  GGTTTT--CTTTTTTCCCTAGAGTTC-TATAGTTTAATATACATTAAGAA  232

seq1  GAGATGCATTAAAATACTCTGATTAAAATTATGTTTAAGGCCGTAATGTT  297
      |||||||| ||||||||||||||||||||||||||||||| |||||||||
seq2  GAGATGCA-TAAAATACTCTGATTAAAATTATGTTTAAGG-CGTAATGTT  280

seq1  TATGTTATTACTGAGTGCTATTAAGTAATATGAGATATATGAGATCATAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTATTACTGAGTGCTATTAAGTAATATGAGATATATGAGATCATAA  330

seq1  AAGGAGGTTGATTTATATTGGTCAGCTTCTGTTGGGATTCGAAAAGAGAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGTTGATTTATATTGGTCAGCTTCTGTTGGGATTCGAAAAGAGAG  380

seq1  ATACTAGCTGTGAGTTTGTTCTGTTGACTCTTCGGTTTATTTATTTATTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTAGCTGTGAGTTTGTTCTGTTGACTCTTCGGTTTATTTATTTATTT  430

seq1  ATTTATTTATTTATTTATTTTGTAGCATTGGGATCAAATCAAAGGCCTTG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTATTTATTTATTTTGTAGCATTGGGATCAAATCAAAGGCCTTG  480

seq1  GACATGCTAGGCAGGTACTGTACCATACTGAACTACATCTGCAGTTCCTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGCTAGGCAGGTACTGTACCATACTGAACTACATCTGCAGTTCCTT  530

seq1  CGCTGGGGCTTTGTAATATGAAGGCATTAGCTGAGCAAATGCCAGTGGAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGGGGCTTTGTAATATGAAGGCATTAGCTGAGCAAATGCCAGTGGAG  580

seq1  AAGAGCATTTGAGAGGGAAGAGACAATTGCAAGTTTAGGGAATCCAAGGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCATTTGAGAGGGAAGAGACAATTGCAAGTTTAGGGAATCCAAGGC  630

seq1  AGGGAACCCATGGATTTATCTTCATTCTATGAGAAACATGGCACAGCTGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAACCCATGGATTTATCTTCATTCTATGAGAAACATGGCACAGCTGG  680

seq1  GATGAACCAGAGAGTGGCCCAAGAGGGCACTGAGAAGTGATCAAGGCCAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAACCAGAGAGTGGCCCAAGAGGGCACTGAGAAGTGATCAAGGCCAG  730

seq1  GTATCACAGGGCATGTCGCCGTTTCAGCCATTTCAGATTTTGTCCCAGAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCACAGGGCATGTCGCCGTTTCAGCCATTTCAGATTTTGTCCCAGAG  780

seq1  AACATGGCTGACAAACAGAAGAATGAGTGGAAGGCAACTAAAGGAAGGCA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGCTGACAAACAGAAGAATGAGTGGAAGGCAACTAAAGGAAGGCA  830

seq1  GGTGCAAAACAGACCTCTTAGCAGACGTCTGTAGTGAGCCAGGTGAGGGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCAAAACAGACCTCTTAGCAGACGTCTGTAGTGAGCCAGGTGAGGGA  880

seq1  TGACAGCTTGGACAGAGCGGGGACACTGGAGTTGACAATAGACGGCTATT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGCTTGGACAGAGCGGGGACACTGGAGTTGACAATAGACGGCTATT  930

seq1  ATCTGAGGCCTAATTTGTAGAAGATTCGGCTTGTTGGTGATTGGAAAAGG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAGGCCTAATTTGTAGAAGATTCGGCTTGTTGGTGATTGGAAAAGG  980

seq1  TGGACAAGAGAGGTGTGAGCACCTGTGGCAGTCTGAATGTATGGGTAGGT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAAGAGAGGTGTGAGCACCTGTGGCAGTCTGAATGTATGGGTAGGT  1030

seq1  GCGCAGAAGTACCACCGCCAAGACTGCAAAGCCCAGGAGGAAAAGCAAGC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCAGAAGTACCACCGCCAAGACTGCAAAGCCCAGGAGGAAAAGCAAGC  1080

seq1  AAAGAGGGAACACTGCGGCTTAGACTTCTGACAAGTGAAATCTGAGATGC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGGGAACACTGCGGCTTAGACTTCTGACAAGTGAAATCTGAGATGC  1130

seq1  CTGTAGGATATTCAAGAGGAGATGTCAAACAGGCAGGCAGAGCTGCATCC  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAGGATATTCAAGAGGAGATGTCAAACAGGCAGGCAGAGCTGCATCC  1180

seq1  TGTTGGGAATTC  1209
      ||||||||||||
seq2  TGTTGGGAATTC  1192

seq1: chr4_49584676_49585240
seq2: B6Ng01-044O17.g_253_818

seq1  TCACCAAGGAAGTCAGGACTGGAACTCAAGCAGGTCAGACAGCAGGAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCAAGGAAGTCAGGACTGGAACTCAAGCAGGTCAGACAGCAGGAGCT  50

seq1  GATGCAGAGGCCATGGAAGGATGTTCTTTACTGGCTTGCTTCCCCTGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCAGAGGCCATGGAAGGATGTTCTTTACTGGCTTGCTTCCCCTGGCT  100

seq1  TGCTCAGTTTGCTTTCTTATAGAACCTAAGACTACCAGCCCAGAGATGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCAGTTTGCTTTCTTATAGAACCTAAGACTACCAGCCCAGAGATGGC  150

seq1  ACCACCCACAAGGGGACCTCCCCACTTGATCACTAACTGAGAAAATGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCCACAAGGGGACCTCCCCACTTGATCACTAACTGAGAAAATGCCT  200

seq1  TACAGCTGGATCTCGTGGAGTCATTTCCCCAACTGAAGCTCCTTTCTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCTGGATCTCGTGGAGTCATTTCCCCAACTGAAGCTCCTTTCTCTG  250

seq1  TGATAACTTCAGCCTGTGTCAAGTTGACACAAAACTAGCCAGTACATAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAACTTCAGCCTGTGTCAAGTTGACACAAAACTAGCCAGTACATAGG  300

seq1  GTGTGTTAAGTAGCTGTGCACAAAGAAGAAAGAAGTAATTAGATATCCTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTTAAGTAGCTGTGCACAAAGAAGAAAGAAGTAATTAGATATCCTG  350

seq1  AAGGCCAAGACCACATTGTTCCCTTTCCTTTCTATCCTTTTATTTCTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCCAAGACCACATTGTTCCCTTTCCTTTCTATCCTTTTATTTCTCTC  400

seq1  CTTTCTAGTATTAGAGGGTTGAAAGGGGGAGAAGGGTGGAAGAAAGAAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTAGTATTAGAGGGTTGAAAGGGGGAGAAGGGTGGAAGAAAGAAGA  450

seq1  AGAATCCACAAAGTAGCAAAAGATGGCTTAAAATAGTTTTCTGGGG-AAA  499
      |||||||||||||||||||||||||||||| ||||| ||||||||| |||
seq2  AGAATCCACAAAGTAGCAAAAGATGGCTTATAATAG-TTTCTGGGGAAAA  499

seq1  AGCTGACTGTGGCTACAGAGACAACGGCAGTGTTGTGA-TTCACCG-TGG  547
      |||||||||||||||||||||||||||||||||||||| ||||||| |||
seq2  AGCTGACTGTGGCTACAGAGACAACGGCAGTGTTGTGATTTCACCGTTGG  549

seq1  CTCCGGTCATGTAAGGCT  565
      |||||||||||| |||||
seq2  CTCCGGTCATGT-AGGCT  566