BAC Information

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BAC

Clone NameB6Ng01-044P09
Chromosome4 (Build37)
Map Location 154,612,675 - 154,763,845
singlet/doubletdoublet
Overlap gene2610002J02Rik, Prkcz, Gabrd
Upstream geneMegf6, Arhgef16, Prdm16, LOC100043342, LOC100042178, Actrt2, B230396O12Rik, Mmel1, 2810405K02Rik, Tnfrsf14, Hes5, Pank4, LOC100043358, Plch2, Pex10, Rer1, Morn1, Ski
Downstream gene2010015L04Rik, Tmem52, Gnb1, Nadk, A530082C11Rik, Cdc2l1, Mmp23, Mib2, B930041F14Rik, Ssu72, EG381582, Atad3a, Vwa1, A230069A22Rik, E230028L10Rik, Mrpl20, Ccnl2, Aurkaip1, Mxra8, Dvl1, Tas1r3, BC002216, Cpsf3l, Pusl1, Centb5, Ube2j2, C1qdc2, B3galt6, Sdf4, LOC100043436, Tnfrsf4, Tnfrsf18, Ttll10, 9430015G10Rik, EG667357, Agrn, LOC100038882, AW011738, LOC677185, 2310042D19Rik, Plekhn1, Klhl17, LOC100042378
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-044P09.bB6Ng01-044P09.g
ACCDH870561DH870562
length839866
definitionDH870561|Mus musculus domesticus DNA, BAC clone: B6Ng01-044P09, 5' end.DH870562|Mus musculus domesticus DNA, BAC clone: B6Ng01-044P09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(154,612,675 - 154,613,513)(154,762,986 - 154,763,845)
sequence
gaattcagggatgtggtctgagggtagccaagggcccagggtcacaagat
cattttacctcgggagtaagaactgtaaggccaagtagtggttagacaca
cactggacatgtgggtgaacctaccaagccttagttccccctgcagaaac
caccttggattaaagtctgggaagcttgttctgggcaaagaccacgacac
tattgccgctgtcaccaccataactctactcctgcacacacaccacacac
acataccactaccaccaccatcaccatcacacacacacacacacaccaca
taccaacacacacacacacacacacacacacacacacacacacaccacac
cacacacatagcacacacaccacacacacataccactaccaccaccatca
cacacacacaccacaatccaacacacacacacacacccaacacacacaca
cacaccacacacacataccactaccaccaccatcagcatcacacacacac
cacataccaatacacacacaccacaccacacacatagcacacacaccaca
cacatacactcacacacacacacccaacacacacacacacacacacacac
acactcacacacacacgcccaacacacacacaccacacacacatacactc
acacacacacacacacacacacacacaccacacacacccaacacacacac
acgcacgcacacacacaccacacacacgttcattcacacacacacaccca
acacacacacacacacctctccatgtaactctgaggctccaacccagggt
tggaaaatccagcggggctggattaagaagagtttccat
gaattcttgcttctctactggctagaagctccaactggattcccaagtgt
gtgagttcctctcccttctcatgtccccacgatttcccctgccttcccgt
tctacctggtaggcctactgggaacaacagggccagcacaggttcccagc
tgctcctgggtcaggctaaccccagatgtgcatggctacttgaggggctg
ggctgggagggtggggcaggctggggccctcccgagaagacagagctcga
gtctctgggcatctctcacttctttcttctcagccatatccaggggatct
tggctgacaggaaggctatgtggtcttgtcagggttctctgctttggaga
aaagccccggggattgggactccagttgccaagcctttaattcccttcca
taaatacatagggggaggggactaaggagacacctcaagggagtctggga
gctctgcctctattctggggtggacacagggcaacattcctcaggagcag
acacgaaggtgtctgaaactgggcagaaaggtagcagaagtgtggagagc
ctcttcattttcctgtgtcttgcctgaagggtccagaggggccggcgcct
gctcctccttggcacctgtgctgagggcaatgctccacccgcaggccctg
atgctctgcctgctgtgaccaaattggccttgtgttcccagggcaatgaa
tgacattggggactacgtgtggctccaacctggaaaatatccctggctcc
ccaaccctggatggcttaatggagggctatgcccgaaactttccgaccag
gcattggaggtacaggcagattatggtgtgggagcagaaacagatccaac
cctggaattgctgtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_154612675_154613513
seq2: B6Ng01-044P09.b_44_882

seq1  GAATTCAGGGATGTGGTCTGAGGGTAGCCAAGGGCCCAGGGTCACAAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGATGTGGTCTGAGGGTAGCCAAGGGCCCAGGGTCACAAGAT  50

seq1  CATTTTACCTCGGGAGTAAGAACTGTAAGGCCAAGTAGTGGTTAGACACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTACCTCGGGAGTAAGAACTGTAAGGCCAAGTAGTGGTTAGACACA  100

seq1  CACTGGACATGTGGGTGAACCTACCAAGCCTTAGTTCCCCCTGCAGAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGACATGTGGGTGAACCTACCAAGCCTTAGTTCCCCCTGCAGAAAC  150

seq1  CACCTTGGATTAAAGTCTGGGAAGCTTGTTCTGGGCAAAGACCACGACAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTGGATTAAAGTCTGGGAAGCTTGTTCTGGGCAAAGACCACGACAC  200

seq1  TATTGCCGCTGTCACCACCATAACTCTACTCCTGCACACACACCACACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCCGCTGTCACCACCATAACTCTACTCCTGCACACACACCACACAC  250

seq1  ACATACCACTACCACCACCATCACCATCACACACACACACACACACCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACCACTACCACCACCATCACCATCACACACACACACACACACCACA  300

seq1  TACCAACACACACACACACACACACACACACACACACACACACACCACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAACACACACACACACACACACACACACACACACACACACACCACAC  350

seq1  CACACACATAGCACACACACCACACACACATACCACTACCACCACCATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACATAGCACACACACCACACACACATACCACTACCACCACCATCA  400

seq1  CACACACACACCACATACCAACACACACACACACACCCAACACACACACA  450
      |||||||||||||||  |||||||||||||||||||||||||||||||||
seq2  CACACACACACCACAATCCAACACACACACACACACCCAACACACACACA  450

seq1  CACACCACACACACATACCACTACCACCACCATCACCATCACACACACAC  500
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CACACCACACACACATACCACTACCACCACCATCAGCATCACACACACAC  500

seq1  CACATACCAATACACACACACCACACCACACACATAGCACACACACCACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACCAATACACACACACCACACCACACACATAGCACACACACCACA  550

seq1  CACATACACTCACACACACACACCCAACACACACACACACACACACACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACACTCACACACACACACCCAACACACACACACACACACACACAC  600

seq1  ACACTCACACACACACGCCCAACACACACACACCACACACACATACACTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTCACACACACACGCCCAACACACACACACCACACACACATACACTC  650

seq1  ACACACACACACACACACACACACACACCACACACACCCAACACACACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACCACACACACCCAACACACACAC  700

seq1  ACACACACACACACACACCACACACACATACACTCACACACACACACCCA  750
      || ||| |||||||||||||||||||| | || |||||||||||||||||
seq2  ACGCACGCACACACACACCACACACACGTTCATTCACACACACACACCCA  750

seq1  ACACACACACACACACCCCTCCATGTAACTCTGAGGCTCCAACCCAAGGT  800
      ||||||||||||||||| |||||||||||||||||||||||||||| |||
seq2  ACACACACACACACACCTCTCCATGTAACTCTGAGGCTCCAACCCAGGGT  800

seq1  TGGAAAATCCA-CCAGGCTGGATTAAGAATGAGTTTCCAT  839
      ||||||||||| |  |||||||||||||| ||||||||||
seq2  TGGAAAATCCAGCGGGGCTGGATTAAGAA-GAGTTTCCAT  839

seq1: chr4_154762986_154763845
seq2: B6Ng01-044P09.g_68_933 (reverse)

seq1  CCACAGCAGATCCAGGGTTGGATCTGTTTCTGCTCCCACACCATCATCTG  50
      ||||||||  |||||||||||||||||||||||||||||||||| |||||
seq2  CCACAGCAATTCCAGGGTTGGATCTGTTTCTGCTCCCACACCATAATCTG  50

seq1  CCTGTACCTCCAATGCCTGGTCGG-AAGTTTCGGGCATAGCCCTCCATTA  99
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCTGTACCTCCAATGCCTGGTCGGAAAGTTTCGGGCATAGCCCTCCATTA  100

seq1  AGCCATCCA-GGTTGGGGAGCCA-GGATA-TTTCCAGGTTGGAGCC-CAC  145
      ||||||||| ||||||||||||| ||||| |||||||||||||||| |||
seq2  AGCCATCCAGGGTTGGGGAGCCAGGGATATTTTCCAGGTTGGAGCCACAC  150

seq1  GTAGTCCCCAATGTCATTCATTGCCCTGGGAACACAAGGCCAA-TTGGTC  194
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTAGTCCCCAATGTCATTCATTGCCCTGGGAACACAAGGCCAATTTGGTC  200

seq1  ACAGCAGGCAGAGCATCAGGGCCTGCGGGTGGAGCATTGCCCTCAGCACA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAGGCAGAGCATCAGGGCCTGCGGGTGGAGCATTGCCCTCAGCACA  250

seq1  GGTGCCAAGGAGGAGCAGGCGCCGGCCCCTCTGGACCCTTCAGGCAAGAC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCAAGGAGGAGCAGGCGCCGGCCCCTCTGGACCCTTCAGGCAAGAC  300

seq1  ACAGGAAAATGAAGAGGCTCTCCACACTTCTGCTACCTTTCTGCCCAGTT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAAAATGAAGAGGCTCTCCACACTTCTGCTACCTTTCTGCCCAGTT  350

seq1  TCAGACACCTTCGTGTCTGCTCCTGAGGAATGTTGCCCTGTGTCCACCCC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACACCTTCGTGTCTGCTCCTGAGGAATGTTGCCCTGTGTCCACCCC  400

seq1  AGAATAGAGGCAGAGCTCCCAGACTCCCTTGAGGTGTCTCCTTAGTCCCC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAGAGGCAGAGCTCCCAGACTCCCTTGAGGTGTCTCCTTAGTCCCC  450

seq1  TCCCCCTATGTATTTATGGAAGGGAATTAAAGGCTTGGCAACTGGAGTCC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTATGTATTTATGGAAGGGAATTAAAGGCTTGGCAACTGGAGTCC  500

seq1  CAATCCCCGGGGCTTTTCTCCAAAGCAGAGAACCCTGACAAGACCACATA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCCCGGGGCTTTTCTCCAAAGCAGAGAACCCTGACAAGACCACATA  550

seq1  GCCTTCCTGTCAGCCAAGATCCCCTGGATATGGCTGAGAAGAAAGAAGTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCCTGTCAGCCAAGATCCCCTGGATATGGCTGAGAAGAAAGAAGTG  600

seq1  AGAGATGCCCAGAGACTCGAGCTCTGTCTTCTCGGGAGGGCCCCAGCCTG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGCCCAGAGACTCGAGCTCTGTCTTCTCGGGAGGGCCCCAGCCTG  650

seq1  CCCCACCCTCCCAGCCCAGCCCCTCAAGTAGCCATGCACATCTGGGGTTA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCCTCCCAGCCCAGCCCCTCAAGTAGCCATGCACATCTGGGGTTA  700

seq1  GCCTGACCCAGGAGCAGCTGGGAACCTGTGCTGGCCCTGTTGTTCCCAGT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGACCCAGGAGCAGCTGGGAACCTGTGCTGGCCCTGTTGTTCCCAGT  750

seq1  AGGCCTACCAGGTAGAACGGGAAGGCAGGGGAAATCGTGGGGACATGAGA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTACCAGGTAGAACGGGAAGGCAGGGGAAATCGTGGGGACATGAGA  800

seq1  AGGGAGAGGAACTCACACACTTGGGAATCCAGTTGGAGCTTCTAGCCAGT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGAGGAACTCACACACTTGGGAATCCAGTTGGAGCTTCTAGCCAGT  850

seq1  AGAGAAGCAAGAATTC  860
      ||||||||||||||||
seq2  AGAGAAGCAAGAATTC  866