BAC Information

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BAC

Clone NameB6Ng01-045A09
Chromosome4 (Build37)
Map Location 115,796,056 - 115,883,406
singlet/doubletdoublet
Overlap geneRad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748
Upstream geneCyp4x1, Cyp4a21-ps, LOC384042, LOC230639, Cyp4a12, LOC546842, Cyp4a12b, LOC435802, LOC666393, LOC230641, Cyp4a14, Cyp4a10, LOC666168, LOC631037, LOC100040843, Cyp4b1, LOC546843, 4732418C07Rik, 4930544O15Rik, Atpaf1, Mobkl2c, Mknk1, Kncn, 6430628N08Rik, Dmbx1, Faah, Nsun4, Uqcrh, Lrrc41
Downstream genePik3r3, Mast2, LOC631400, Ipp, Tmem69, Gpbp1l1, LOC622665, Nasp, Akr1a4, Prdx1, Mmachc, 0610037D15Rik, Tesk2, Toe1, Mutyh, Hpdl, LOC625336, LOC100041048, Zswim5, Urod, Hectd3, Eif2b3, Ptch2, 9530048O09Rik, LOC100041324, 4833401D15Rik, Plk3, Best4-ps, LOC625405, Rps8, Kif2c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045A09.bB6Ng01-045A09.g
ACCDH870604DH870605
length1,0511,069
definitionDH870604|Mus musculus domesticus DNA, BAC clone: B6Ng01-045A09, 5' end.DH870605|Mus musculus domesticus DNA, BAC clone: B6Ng01-045A09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,882,350 - 115,883,406)(115,796,056 - 115,797,138)
sequence
gaattcactgcaggctttattccccaaccacaactgaaacacatcccttg
gattaagtcttcttttccaagacaatagaggaattgagcccagaatccta
gcttgatatggggctttgtggttgctgtttctgcagtgtttgcctaggac
cctgcaaataagaaccaggcagtacccatctcacccgtgaattgcttcag
ttctgaaacgcttaactcaataacagaccactaagacttctctgttttgt
ttgtttttttttttttcttctctttttctgaccaagtcatatattgagga
aaatgattataccctagtaccacttcagccagttctatctaacaatctgt
gtatacgccttaagcccagaagctctaaatatggccttagttgaaaaaga
agtcttcaaaggtgtaagtaaaaatcttgcaaggagattgtcataggttc
aaggtgaattatcgatccagtgacaaatgtccttgtgacaaatgggaaga
agtagatctgagacacagccatacacagaaagctgtttgaagacagtggc
aggggtcagagcaatacctttacaagccagaaagcaccaagaattacatg
gcaacccccagaatctaggagaagacatgcattctctctcagagtctcca
gaaagtcctaactagtcctgcctacatcttggctttgaacctttggactt
tagccctccagtattatgaaagaataagtttctattgttttaagccagcc
agttgtggtaagacactatcgcaatcctagagaagtaataccacaaatac
caggccgtcttcttcttctatatatttttttaatgtttagagacaaactc
ttatgctggagcccaagctgtctggctctcggactcgactcactgtagtc
ttcatatgtcagccttcaagtgttgggactagaaggtaaaccatcatact
ccgttccataatttttaaaaatttttccatttaggtcatttgtttatttt
taaatgggttcatgctctgggactgctatggcacacctaatccattacta
a
gaattcttaggagagggatagaatttaccagagctggaccgacatcaaac
ctcagtgtgaggaaggcaagcagagacctaggaacgccttgtgggaagtt
aaacaggaacccaggaaggaccagttaaaaatccaggttgggaggaggag
aatcttagaagctgaagagaggcaaagagcgactccggtatctttcccct
tattcttcctcttcccaaagcgcgcgttaagagcctccaggcagtgtcaa
tcgaacctcccgccactctgccaccacagtcccctattggctgcgttcag
tgaacttgacgctcgacgatccggcctaaaggaaggggcgggcctagggc
tgaggctaataagggtcttggatttccgcccagaggctcaacagaccact
aggagctgtggcttatcctggtggcagcaacaggcaggtgccagaattct
tacttgccaacggtccctcttcctggctcctgcctttggccgaagcagct
gaaccaaatagatgttttgcaccgaagtactgtgcggaggagttgctact
ggaatagatttcaaaaggcagcacatttttgggaatttgattcaggctct
ttattgtgccagacctggagcagaaatctgagctggaagcaggcaaggcc
agtggccagtcaaaaggtgagcggaggtgttggtgctgcactgccaattg
gtctgagatgtcttgaaataagctagctgtcttttcctggggcatagtca
cccattctctaaaaatccgtttttcctttaagtgatattattatagtacc
tctcctaagggattattcacagggtctaattaaagtgaacaaagtagctg
cgcctggtagcgcaggcctttaattatagtactcactaggcataggcagc
agatctctgtgagactagcctggtcttcataatgagttccaggacagcga
cagctctgtagaagatcctcagacgggaaaaaaaaaagtgttcaaagtat
aacatagtctccatgtataccttagtgctcactatcaaatagcatgccat
taccctatcactatctact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_115882350_115883406
seq2: B6Ng01-045A09.b_44_1094 (reverse)

seq1  TTAGTAATGGGATTAAAGGTGTGCACTAGCAGTCCCAGAGCATGACACCA  50
      |||||||| |||||  ||||||||  |||||||||||||||||||  |||
seq2  TTAGTAAT-GGATT--AGGTGTGCCATAGCAGTCCCAGAGCATGAACCCA  47

seq1  TTTAAAAATAAACAAATGAACTAAATGGGAAAATATTTTAAAAATTATGG  100
      ||||||||||||||||||| |||||||| ||||| |||||||||||||||
seq2  TTTAAAAATAAACAAATGACCTAAATGGAAAAAT-TTTTAAAAATTATGG  96

seq1  AACGGAGTATGATGGTTTACCCTTCTAGTCCCAACACTTGGAAGGCTGAC  150
      ||||||||||||||||||| ||||||||||||||||||| ||||||||||
seq2  AACGGAGTATGATGGTTTA-CCTTCTAGTCCCAACACTT-GAAGGCTGAC  144

seq1  ATATGAAGACTACAGTGAGTCGAGTCCGAGGGCCAGACAGCTTGGGCTCC  200
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ATATGAAGACTACAGTGAGTCGAGTCCGAGAGCCAGACAGCTTGGGCTCC  194

seq1  AGCATAAGAGTTTGTCTCTAAACATTAAAAAAATATATAGAAGAAGAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAAGAGTTTGTCTCTAAACATTAAAAAAATATATAGAAGAAGAAGA  244

seq1  CGGCCTGGTATTTGTGGTATTACTTCTCTAGGATTGCGATAGTGTCTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCCTGGTATTTGTGGTATTACTTCTCTAGGATTGCGATAGTGTCTTAC  294

seq1  CACAACTGGCTGGCTTAAAACAATAGAAACTTATTCTTTCATAATACTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACTGGCTGGCTTAAAACAATAGAAACTTATTCTTTCATAATACTGG  344

seq1  AGGGCTAAAGTCCAAAGGTTCAAAGCCAAGATGTAGGCAGGACTAGTTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTAAAGTCCAAAGGTTCAAAGCCAAGATGTAGGCAGGACTAGTTAG  394

seq1  GACTTTCTGGAGACTCTGAGAGAGAATGCATGTCTTCTCCTAGATTCTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTCTGGAGACTCTGAGAGAGAATGCATGTCTTCTCCTAGATTCTGG  444

seq1  GGGTTGCCATGTAATTCTTGGTGCTTTCTGGCTTGTAAAGGTATTGCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGCCATGTAATTCTTGGTGCTTTCTGGCTTGTAAAGGTATTGCTCT  494

seq1  GACCCCTGCCACTGTCTTCAAACAGCTTTCTGTGTATGGCTGTGTCTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCTGCCACTGTCTTCAAACAGCTTTCTGTGTATGGCTGTGTCTCAG  544

seq1  ATCTACTTCTTCCCATTTGTCACAAGGACATTTGTCACTGGATCGATAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTACTTCTTCCCATTTGTCACAAGGACATTTGTCACTGGATCGATAAT  594

seq1  TCACCTTGAACCTATGACAATCTCCTTGCAAGATTTTTACTTACACCTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTGAACCTATGACAATCTCCTTGCAAGATTTTTACTTACACCTTT  644

seq1  GAAGACTTCTTTTTCAACTAAGGCCATATTTAGAGCTTCTGGGCTTAAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACTTCTTTTTCAACTAAGGCCATATTTAGAGCTTCTGGGCTTAAGG  694

seq1  CGTATACACAGATTGTTAGATAGAACTGGCTGAAGTGGTACTAGGGTATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATACACAGATTGTTAGATAGAACTGGCTGAAGTGGTACTAGGGTATA  744

seq1  ATCATTTTCCTCAATATATGACTTGGTCAGAAAAAGAGAAGAAAAAAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTTCCTCAATATATGACTTGGTCAGAAAAAGAGAAGAAAAAAAAA  794

seq1  AAAACAAACAAAACAGAGAAGTCTTAGTGGTCTGTTATTGAGTTAAGCGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAACAAAACAGAGAAGTCTTAGTGGTCTGTTATTGAGTTAAGCGT  844

seq1  TTCAGAACTGAAGCAATTCACGGGTGAGATGGGTACTGCCTGGTTCTTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGAACTGAAGCAATTCACGGGTGAGATGGGTACTGCCTGGTTCTTAT  894

seq1  TTGCAGGGTCCTAGGCAAACACTGCAGAAACAGCAACCACAAAGCCCCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGGGTCCTAGGCAAACACTGCAGAAACAGCAACCACAAAGCCCCAT  944

seq1  ATCAAGCTAGGATTCTGGGCTCAATTCCTCTATTGTCTTGGAAAAGAAGA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGCTAGGATTCTGGGCTCAATTCCTCTATTGTCTTGGAAAAGAAGA  994

seq1  CTTAATCCAAGGGATGTGTTTCAGTTGTGGTTGGGGAATAAAGCCTGCAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATCCAAGGGATGTGTTTCAGTTGTGGTTGGGGAATAAAGCCTGCAG  1044

seq1  TGAATTC  1057
      |||||||
seq2  TGAATTC  1051

seq1: chr4_115796056_115797138
seq2: B6Ng01-045A09.g_69_1137

seq1  GAATTCTTAGGAGAGGGATAGAATTTACCAGAGCTGGACCGACATCAAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGGAGAGGGATAGAATTTACCAGAGCTGGACCGACATCAAAC  50

seq1  CTCAGTGTGAGGAAGGCAAGCAGAGACCTAGGAACGCCTTGTGGGAAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGTGAGGAAGGCAAGCAGAGACCTAGGAACGCCTTGTGGGAAGTT  100

seq1  AAACAGGAACCCAGGAAGGACCAGTTAAAAATCCAGGTTGGGAGGAGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGAACCCAGGAAGGACCAGTTAAAAATCCAGGTTGGGAGGAGGAG  150

seq1  AATCTTAGAAGCTGAAGAGAGGCAAAGAGCGACTCCGGTATCTTTCCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTAGAAGCTGAAGAGAGGCAAAGAGCGACTCCGGTATCTTTCCCCT  200

seq1  TATTCTTCCTCTTCCCAAAGCGCGCGTTAAGAGCCTCCAGGCAGTGTCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTCCTCTTCCCAAAGCGCGCGTTAAGAGCCTCCAGGCAGTGTCAA  250

seq1  TCGAACCTCCCGCCACTCTGCCACCACAGTCCCCTATTGGCTGCGTTCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAACCTCCCGCCACTCTGCCACCACAGTCCCCTATTGGCTGCGTTCAG  300

seq1  TGAACTTGACGCTCGACGATCCGGCCTAAAGGAAGGGGCGGGCCTAGGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTGACGCTCGACGATCCGGCCTAAAGGAAGGGGCGGGCCTAGGGC  350

seq1  TGAGGCTAATAAGGGTCTTGGATTTCCGCCCAGAGGCTCAACAGACCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTAATAAGGGTCTTGGATTTCCGCCCAGAGGCTCAACAGACCACT  400

seq1  AGGAGCTGTGGCTTATCCTGGTGGCAGCAACAGGCAGGTGCCAGAATTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTGTGGCTTATCCTGGTGGCAGCAACAGGCAGGTGCCAGAATTCT  450

seq1  TACTTGCCAACGGTCCCTCTTCCTGGCTCCTGCCTTTGGCCGAAGCAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGCCAACGGTCCCTCTTCCTGGCTCCTGCCTTTGGCCGAAGCAGCT  500

seq1  GAACCAAATAGATGTTTTGCACCGAAGTACTGTGCGGAGGAGTTGCTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCAAATAGATGTTTTGCACCGAAGTACTGTGCGGAGGAGTTGCTACT  550

seq1  GGAATAGATTTCAAAAGGCAGCACATTTTTGGGAATTTGATTCAGGCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAGATTTCAAAAGGCAGCACATTTTTGGGAATTTGATTCAGGCTCT  600

seq1  TTATTGTGCCAGACCTGGAGCAGAAATCTGAGCTGGAAGCAGGCAAGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTGTGCCAGACCTGGAGCAGAAATCTGAGCTGGAAGCAGGCAAGGCC  650

seq1  AGTGGCCAGTCAAAAGGTGAGCGGAGGTGTTGGTGCTGCACTGCCAATTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGCCAGTCAAAAGGTGAGCGGAGGTGTTGGTGCTGCACTGCCAATTG  700

seq1  GTCTGAGATGTCTTGAAATAAGCTAGCTGTCTTTTCCTGGGGCATAGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAGATGTCTTGAAATAAGCTAGCTGTCTTTTCCTGGGGCATAGTCA  750

seq1  CCCATTCTCTAAAAATCCGTTTTTCCTTTAAGTGATATTATTATAGTACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTCTCTAAAAATCCGTTTTTCCTTTAAGTGATATTATTATAGTACC  800

seq1  TCTCCTAAGGGATTATTCACAGGGTCTAATTAAAGTGAACAAAGTAGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTAAGGGATTATTCACAGGGTCTAATTAAAGTGAACAAAGTAGCTG  850

seq1  CGCCTGGTAGCGCAGGCCTTTAATTATAGTACTCACTAGGCATAGGCAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CGCCTGGTAGCGCAGGCCTTTAATTATAGTACTCACTAGGCATAGGC-AG  899

seq1  CAGATCTCTGTGAGACTAGCCTGGTCTTCATAATGAGTTCCAGGACAGCG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTCTGTGAGACTAGCCTGGTCTTCATAATGAGTTCCAGGACAGCG  949

seq1  ACAGCTCTGTAGAAAGACCCTCCAAGAACGGGAAAAAAAAAAAGTGTTCA  1000
      |||||||||||| |||| ||||  || ||||| |||||||||||||||||
seq2  ACAGCTCTGTAG-AAGATCCTC--AG-ACGGG-AAAAAAAAAAGTGTTCA  994

seq1  AAGTATTTAACATAGCCCCCATGTATTACCTAAGTGCTCACTAATCAAAA  1050
      |||||  |||||||| | ||||||| ||||| |||||||||| ||| |||
seq2  AAGTA--TAACATAGTCTCCATGTA-TACCTTAGTGCTCACT-ATC-AAA  1039

seq1  TAGCATGCCCATTACACTTAATCACTATCTACT  1083
      ||||||| ||||||| ||  |||||||||||||
seq2  TAGCATG-CCATTACCCT--ATCACTATCTACT  1069