BAC Information

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BAC

Clone NameB6Ng01-045J21
Chromosome4 (Build37)
Map Location 146,632,988 - 146,633,983
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546
Downstream geneLOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-045J21.bB6Ng01-045J21.g
ACCDH871021DH871022
length1,1881,093
definitionDH871021|Mus musculus domesticus DNA, BAC clone: B6Ng01-045J21, 5' end.DH871022|Mus musculus domesticus DNA, BAC clone: B6Ng01-045J21, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctacttcatgttccctgtgccttccatcctctgtgtgtctgtt
cagttagtttaaatctgtaacttcctgaaggctgcttgtatagctctccc
tttctgtctgccttttgtctccaggttggtgtctatctgtgtaatctgtt
gtctgtttgtatctctctgactggccttgagagagagctttggcgttctt
ctagaacatcaagggaaccgtcacatggggaaagaatgggacagtgaaca
gtaatcttttataaaggattaggtaactggctccaagtggtcaagtggtc
aagacaacaaacatttataaacatgacttttatcaaccaatacccataac
tgtatattcatttttgaactatgctttaagcctctgtacttcatgctttc
atcaaatgacactcatgcagtttctgagcatgacttgaaaaagtacataa
attgccattgtatctatgcatcaagttaggttttaaaagttgatttcaag
aaaagaccaaggaaaataatgttagtttttacgttgttctttgaaaagtg
tgctaagggctggtgagatggttcagtgggtaagagcacccagctgctct
tcgaaggtccgaagttcaaatcccagcaaccacatggtggctcacaacca
tccataatgagatccgactccctcttctggagtgtctgaagacagctaca
gtgtacttacatataataaaaaataaacaaatctttaaaaaaaaaaaaaa
aaaggaaagtgtgctaaaccctcaagttgagtcaagttgggggcgcacgc
ctttaatcccagcactctggaggcagagcaggcagatttctgagttccag
gccagcctggtctacaaagtgagttccaggacagccaggctatacagaga
accctgctcgaggaaaaaaaaaaagatgcagcagcactgacacaaagggt
gctttcacaactgacatagtcttcatgctaagacagggctgacctaacac
ttgtaatgaagggcaaactggtgctgcaagaacattgaactcttatgttc
caggtcctcttatgaggtcttggaaggtacacaacggaatataaccgatc
atcaaaacatggattattctcggataatgctagacaggatcggattcgga
tcatcaggctatgactatcctacgacctgcgtaagagt
gaattcatacaggagagaaaccttacaaatgcagtgaatgtgacaaatgc
tttacccaaaaatctcatcttagcgttcatcagagaattcatacaggaga
gaaaccttacaaatgtagtgaatgtgacaaatgctttacccacaaatccc
atcttaatagtcatcagagaattcatacaggagagaaaccttacaaatgt
agtgaatgtgacaaatgctttacccgaaaattccatcttagtattcatca
gagaattcatacaggagagaaaccttataaatgcagtgaatgtgacaaat
gctttactgaaaaaagcagtctgagaattcatcagagaattcatacagga
gagaatccttacaaatgcagtgaatgtgacaaatgctttacccgaaaatt
ccatcttagtattcatcagaaaatccatacaggagagaaaccttacaaat
agtttacatgtgacaaatacaatactcaccatgtcagtctgagaaatcat
cagttacttcatacagtagagaatctttataaatgaagtgaacgagacaa
tcctttaccaaaatatatcatcttataattcattagagaatacttagaga
agacaaacttcaaatatattgtaggtatgaatcctttacttttggcctat
ttcctagaatataacagtgaatatacttacaggctagaaacttaactcat
gcattgtatgaagaaatatctttgacttcatttcagtcagaaaaaacatc
taagaactttttaagggatagtatttctgttgggaaaaatgtggcatatg
ttttattcaaggtatatttcttgacaacacttgagctctactctagagaa
ttggtatgattatgaaaatcttgtgaaaattttcatgcatgttcaatctt
ggtaatgtcactattatgctgatgactctgtacatgtgaaatgtagaagc
tttcatgacacttttacttgtcaccttcaatgttacaacattgaagaaag
tgggagtcagaagatagtattgcttaaacactgaaaaagaaataatccat
ttcaaggaaactataagtttataattcctcacaattctataaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146632988_146633983
seq2: B6Ng01-045J21.g_193_1162

seq1  GTGACAAATGCTTTACCCATCAGAT-CCATCTTAGTATCCATCAGGGAAT  49
      ||||||||||||||||||| || || |||||||| ||  |||||| ||||
seq2  GTGACAAATGCTTTACCCA-CAAATCCCATCTTAATAGTCATCAGAGAAT  49

seq1  TCATGCAGAAGAGAAAATTTACAAATGTAGTGAATGTGACAAATGCTTTA  99
      |||| ||| |||||||  ||||||||||||||||||||||||||||||||
seq2  TCATACAGGAGAGAAACCTTACAAATGTAGTGAATGTGACAAATGCTTTA  99

seq1  CCCAAAAATCCAATCTTAATATTCATCAGAGAATTCATACAGGAGAGAAA  149
      ||| ||||| | |||||| |||||||||||||||||||||||||||||||
seq2  CCCGAAAATTCCATCTTAGTATTCATCAGAGAATTCATACAGGAGAGAAA  149

seq1  CCTTATAAATGCAGTGAATGTGACAAATGCTTTACTGAAAAAAGCAGTCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATAAATGCAGTGAATGTGACAAATGCTTTACTGAAAAAAGCAGTCT  199

seq1  GAGAATTCATCAGAGAATTCATACAGGAGAGAATCCTTACAAATGCAGTG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTCATCAGAGAATTCATACAGGAGAGAATCCTTACAAATGCAGTG  249

seq1  AATGTGACAAATGCTTTACCCGAAAATTCCATCTTAGTATTCATCAGAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGACAAATGCTTTACCCGAAAATTCCATCTTAGTATTCATCAGAAA  299

seq1  ATCCATACAGGAGAGAAACCTTACAAATAGTTTACATGTGACAAATACAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATACAGGAGAGAAACCTTACAAATAGTTTACATGTGACAAATACAA  349

seq1  TACTCACCATGTCAGTCTGAGAAATCATCAGTTACTTCATATAGTAGAGA  399
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TACTCACCATGTCAGTCTGAGAAATCATCAGTTACTTCATACAGTAGAGA  399

seq1  ATCTTTATAAATGAA-TGAACGAGACAATCCTTTACCAAAATATATCATC  448
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATCTTTATAAATGAAGTGAACGAGACAATCCTTTACCAAAATATATCATC  449

seq1  TTATAATTCATTAGAGAATACTTAGAGAAGACAAACTTCAAATATATTGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATTCATTAGAGAATACTTAGAGAAGACAAACTTCAAATATATTGT  499

seq1  AGGTATGAATCCTTTACTTTTGGCCTATTTCCTAGAATATAACAGTGAAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTATGAATCCTTTACTTTTGGCCTATTTCCTAGAATATAACAGTGAAT  549

seq1  ATACTTACAGGCTAGAAACTTAACTCATGCATTGTATGAAGAAATATCTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTACAGGCTAGAAACTTAACTCATGCATTGTATGAAGAAATATCTT  599

seq1  TGACTTCATTTCAGGTCAGAGAAAACATCTAAGAACTTTTTAAGGGATAG  648
      ||||||||||||| |||||| |||||||||||||||||||||||||||||
seq2  TGACTTCATTTCA-GTCAGAAAAAACATCTAAGAACTTTTTAAGGGATAG  648

seq1  TATTTCTGTTGGGAAAAATGTGGCATATGTTTTATTCAAGGTGTA-TTCT  697
      |||||||||||||||||||||||||||||||||||||||||| || ||||
seq2  TATTTCTGTTGGGAAAAATGTGGCATATGTTTTATTCAAGGTATATTTCT  698

seq1  TGACAACACTTGAGGCTCCACTCTAGAGAATTAGTATGATTATGAAAATC  747
      ||||||||||||| |||| ||||||||||||| |||||||||||||||||
seq2  TGACAACACTTGA-GCTCTACTCTAGAGAATTGGTATGATTATGAAAATC  747

seq1  TTGTGAAAATTTTCATGCAATGTTCAAATCTTGGGTAATGTCAACTATTT  797
      |||||||||||||||||| |||||| |||||| ||||||||| |||| ||
seq2  TTGTGAAAATTTTCATGC-ATGTTC-AATCTT-GGTAATGTC-ACTA-TT  792

seq1  ATGCTGGATGAACTCTGTACATGTGAAAATGTAGAAAGCCTTTCATGACA  847
      ||||| |||| |||||||||||||| ||||||||||   |||||||||| 
seq2  ATGCT-GATG-ACTCTGTACATGTG-AAATGTAGAA--GCTTTCATGAC-  836

seq1  ACTTTTACTTGTTCACCCTCAAATGTTACAACA-TGAAGAAAAGTGGGGA  896
      ||||||||||| ||||| || |||||||||||| ||||| ||||||||  
seq2  ACTTTTACTTG-TCACCTTC-AATGTTACAACATTGAAG-AAAGTGGG--  881

seq1  AGTCAGAAGATAGTATTGCATAACACACTGAGAAAGAAATAATCCATTTC  946
      ||||||||||||||||||| ||| ||||||| ||||||||||||||||||
seq2  AGTCAGAAGATAGTATTGCTTAA-ACACTGAAAAAGAAATAATCCATTTC  930

seq1  AAAGAAAATTTATTAAGGTCTTTAATACAATCCTCACAATATCTAATAAA  996
      || |||| | |    | || | ||||    |||||||||| ||| |||||
seq2  AAGGAAACTAT----AAGTTTATAAT----TCCTCACAAT-TCT-ATAAA  970