BAC Information

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BAC

Clone NameB6Ng01-048C06
Chromosome4 (Build37)1 (Build37)
Map Location 35,610,406 - 35,610,742145,669,541 - 145,670,624
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSlc35a1, 1700003M02Rik, Gm136, 1810030N24Rik, Zfp292, Cga, Mobkl2b, Ifnk, 3110043O21Rik, LOC620559, LOC621227
Downstream geneLingo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048C06.bB6Ng01-048C06.g
ACCDH872791DH872792
length9031,042
definitionDH872791|Mus musculus domesticus DNA, BAC clone: B6Ng01-048C06, 5' end.DH872792|Mus musculus domesticus DNA, BAC clone: B6Ng01-048C06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(35,610,406 - 35,610,742)(145,669,541 - 145,670,624)
sequence
gaattcaaggcccatacctaaacatgataaaagcaatttacagcaaacca
gtagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagacaaggctgcccactttctccctaccttttcaacatag
tacttgaagtattagccagagcaattcgacaacaaaaggagatcaagggg
atacaaattggaaaagaggaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgaccctaaaaattctaccagagaactcctaaacc
tgataaacagcttcggtgaagtagctggatataaaataaactcaaacaag
tcaatggcctttctctatacaaagaataaacaggctgagaaagaaattag
ggaaacaacacccttctcaatagtcacaaataatataaaatatcttggcg
tgactctaactaaggaagtgaaagatctgtatgataaaaacttcaaatct
ctgaagaaagaaattaaggaagatctcagaagatggaaagatctcccatg
ctcatggattggcaggatcaacattgtaaaaatggctatcttgccaaaag
caatctacagattcaatgcaatccccatcaaaattccaactcaattcttc
aacgaattggaaggagcaatttgcaaatttgtctggaataacaaaaaacc
taggatagcaaaaagtcttctcaaggataaaagaacttctggcggaatca
ccatgccagacctaaagctttactacagagcaattgtgataaaaactgca
tggtactggtatagagacagacagtagaccaatggatagatttgagaccc
agaaatgacccacacacctatgtcacttgatcttcgacaggagctaaatc
atc
gaattcttaaggaagaattggtgccacaatttataaaaaaggggaaacac
taaaggaagtctaatctagttcttctctcttatgtaaggaagaattcttt
tccttgagtgttcagagtgagtttgaccagacaagattgtgaatatgtgc
tggagctcagcgtctcaggaaatggcaagtgagtgttttggtgttacagg
aagcatggtctccttattcttggtgtaataggactttctgtcagtgttca
agaattttctggacaggaagatggagtagaagctcagctgatggtgcctg
agaccttccacatttcttttttctttgatcacctcctttcttcatcccaa
ctctcacgtagaagtgctgacatctaggacatagggttctggtactgcca
gagcaaggagagaaatagcctggatggcacagggaagctggactttgttc
tttgctaatgagtggcctctcttaccacacacagtgggataacttctttt
tgccagtggactacgtgctgttgagttcattttgtgcaacaaagattggc
aagcaagggttgcaatttgttttccgattcatctcacagcagattctttt
ctcacttataattgttgggtttcttaaggattgggaagcagtttctggct
ctctatatatgttcttttagtattgtaaaaatcttactagtaataatttg
ataaagcaaaggtaaatgaataaaaccaaggatttattatacagtgtgta
cgcaaccttagaatgtcttaactttgagtcaatgtccttacttaaacatc
atataagagcagctgactcactgtgttgctgttgtaggatgaaatgagta
tgtcatgtcaagcattagcggagtgctgaaacagtgagtgctataaaggc
agctatcatatgtgctttatatatacatctgatcagtagtagcacggagg
cgagactggtctgcagcacttctgctggacttgtcatgacttcataagat
agactttaaaatcttagacaatcgtaatggatatcttgtatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_35610406_35610742
seq2: B6Ng01-048C06.b_140_476 (reverse)

seq1  ATTATTTGTGACTATTGAGAAGGGTGTTGTTTCCCTAATTTCTTTCTCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTGTGACTATTGAGAAGGGTGTTGTTTCCCTAATTTCTTTCTCAG  50

seq1  CCTGTTTATTCTTTGTGTAGAGAAAGGCCATTGACTTGTTTGAGTTAATT  100
      |||||||||||||||| ||||||||||||||||||||||||||||| |||
seq2  CCTGTTTATTCTTTGTATAGAGAAAGGCCATTGACTTGTTTGAGTTTATT  100

seq1  TTATATCCAGCTACTTCACTGAAGCTGTTTATCAGGTTTAGGAGTTCTCT  150
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTATATCCAGCTACTTCACCGAAGCTGTTTATCAGGTTTAGGAGTTCTCT  150

seq1  GGTAGAATTTTTAGGGTCACTTATATATACTATCATATCATCTGCAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAATTTTTAGGGTCACTTATATATACTATCATATCATCTGCAAAAA  200

seq1  GTTATATTTTGACTTCATCTTTTCCAATTTGTATCCCCTTGATCCCCTTT  250
      || ||||||||||||| ||||||||||||||||||||||||||| |||||
seq2  GTGATATTTTGACTTCCTCTTTTCCAATTTGTATCCCCTTGATCTCCTTT  250

seq1  TGTTGTCAAATTGCTCTGGCTAGGACTTCAAGTACAATGTTGAATAGATA  300
      ||||||| ||||||||||||||  ||||||||||| |||||||| || ||
seq2  TGTTGTCGAATTGCTCTGGCTAATACTTCAAGTACTATGTTGAAAAGGTA  300

seq1  GGGAGAAAGTGGGCAGCCTTGTCTAGTCCCTGATTTT  337
      |||||||||||||||||||||||||||||||||||||
seq2  GGGAGAAAGTGGGCAGCCTTGTCTAGTCCCTGATTTT  337

seq1: chr1_145669541_145670624
seq2: B6Ng01-048C06.g_67_1108

seq1  GAATTCTTAAGGAAGAATTGGTGCCACAATTTATAAAAAAGGGGAAACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAAGGAAGAATTGGTGCCACAATTTATAAAAAAGGGGAAACAC  50

seq1  TAAAGGAAGTCTAATCTAGTTCTTCTCTCTTATGTAAGGAAGAATTCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGAAGTCTAATCTAGTTCTTCTCTCTTATGTAAGGAAGAATTCTTT  100

seq1  TCCTTGAGTGTTCAGAGTGAGTTTGACCAGACAAGATTGTGAATATGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGAGTGTTCAGAGTGAGTTTGACCAGACAAGATTGTGAATATGTGC  150

seq1  TGGAGCTCAGCGTCTCAGGAAATGGCAAGTGAGTGTTTTGGTGTTACAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCTCAGCGTCTCAGGAAATGGCAAGTGAGTGTTTTGGTGTTACAGG  200

seq1  AAGCATGGTCTCCTTATTCTTGGTGTAATAGGACTTTCTGTCAGTGTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATGGTCTCCTTATTCTTGGTGTAATAGGACTTTCTGTCAGTGTTCA  250

seq1  AGAATTTTCTGGACAGGAAGATGGAGTAGAAGCTCAGCTGATGGTGCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTTCTGGACAGGAAGATGGAGTAGAAGCTCAGCTGATGGTGCCTG  300

seq1  AGACCTTCCACATTTCTTTTTTCTTTGATCACCTCCTTTCTTCATCCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTTCCACATTTCTTTTTTCTTTGATCACCTCCTTTCTTCATCCCAA  350

seq1  CTCTCACGTAGAAGTGCTGACATCTAGGACATAGGGTTCTGGTACTGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCACGTAGAAGTGCTGACATCTAGGACATAGGGTTCTGGTACTGCCA  400

seq1  GAGCAAGGAGAGAAATAGCCTGGATGGCACAGGGAAGCTGGACTTTGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAAGGAGAGAAATAGCCTGGATGGCACAGGGAAGCTGGACTTTGTTC  450

seq1  TTTGCTAATGAGTGGCCTCTCTTACCACACACAGTGGGATAACTTCTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTAATGAGTGGCCTCTCTTACCACACACAGTGGGATAACTTCTTTT  500

seq1  TGCCAGTGGACTACGTGCTGTTGAGTTCATTTTGTGCAACAAAGATTGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGTGGACTACGTGCTGTTGAGTTCATTTTGTGCAACAAAGATTGGC  550

seq1  AAGCAA-GGTTGCAATTTGTTTTCCGATTCATCTCACAGCAGATTCTTTT  599
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGGGTTGCAATTTGTTTTCCGATTCATCTCACAGCAGATTCTTTT  600

seq1  CTCACTTATAATTGTTGGGTTTCTTAAGGATTGGGAAGCAGTTTCTGGCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTATAATTGTTGGGTTTCTTAAGGATTGGGAAGCAGTTTCTGGCT  650

seq1  CTCTATATATGTTCTTTTAGTATTGTAAAAATCTTACTAGTAATAATTTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATATATGTTCTTTTAGTATTGTAAAAATCTTACTAGTAATAATTTG  700

seq1  ATAAAAGCAAAGGTAAATGAATAAAACCAAGGATTTATTATACAGTGTGT  749
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AT-AAAGCAAAGGTAAATGAATAAAACCAAGGATTTATTATACAGTGTGT  749

seq1  ACGCAACCTTAGAATGTCTTAACTTTGAGTCAATGTCCTTACTTAAACAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCAACCTTAGAATGTCTTAACTTTGAGTCAATGTCCTTACTTAAACAT  799

seq1  CATAATAAGAGCAGCTGACTCACTGTGTTGCTGTTGTAGGGATGAAATGA  849
      ||| |||||||||||||||||||||||||||||||||| |||||||||| 
seq2  CAT-ATAAGAGCAGCTGACTCACTGTGTTGCTGTTGTA-GGATGAAATG-  846

seq1  AGTATGTCATGTCAAGCAATTAGCGGAGTGCTGGAAACAGTGAGTGCTTA  899
      ||||||||||||||||| |||||||||||||| |||||||||||||||  
seq2  AGTATGTCATGTCAAGC-ATTAGCGGAGTGCT-GAAACAGTGAGTGCT--  892

seq1  ATAAAGGGCAGCTATCATTATGGTTGCTTTATATTATTACATTCTGATTC  949
      ||||| ||||||||||| ||||  ||||||||||   |||| ||||| ||
seq2  ATAAA-GGCAGCTATCA-TATG--TGCTTTATAT--ATACA-TCTGA-TC  934

seq1  AGTAGGTTAGGCACGGAGGCCGAGAACTTGGGTCTTGCCAAGCAACTTCT  999
      |||||  || ||||||||| |||| |||  |||| |||  ||| ||||||
seq2  AGTAG--TA-GCACGGAGG-CGAG-ACT--GGTC-TGC--AGC-ACTTCT  973

seq1  GCCTGAGACTCTGTCCATGACTTTTCAATAGTAGTAGACTTTAAAAATTC  1049
      | ||| |||| ||| ||||||||   || |    ||||||||||||  ||
seq2  G-CTG-GACT-TGT-CATGACTTCATAAGA----TAGACTTTAAAA--TC  1013

seq1  ATAGACACAATTATGATAGTGGATATCCTTGTATC  1084
       ||||||     ||  || ||||||| ||||||||
seq2  TTAGACA-----ATCGTAATGGATAT-CTTGTATC  1042