BAC Information

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BAC

Clone NameB6Ng01-048C11
Chromosome4 (Build37)
Map Location 18,949,882 - 18,950,611
singlet/doubletsinglet
Overlap geneLOC435772
Upstream geneMmp16, LOC667251
Downstream geneCngb3, LOC623122, Cpne3, LOC100040306, 2410005O16Rik, Wwp1, Slc7a13, Atp6v0d2, LOC667282, Ttpa
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-048C11.bB6Ng01-048C11.g
ACCDH872801DH872802
length1,172720
definitionDH872801|Mus musculus domesticus DNA, BAC clone: B6Ng01-048C11, 5' end.DH872802|Mus musculus domesticus DNA, BAC clone: B6Ng01-048C11, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcctgatctttccagaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctacttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattaaggatttttgc
atcgatgttcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcagagtaatagtggcttcataaaatgagttg
ggtagaataccttctacttctatcttgtgaaaaagtttgtgcagaactgg
agttagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctctttttggctgggagactattaataactgcttctatttct
ttaggggatatgggactgtttagaaggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtatagccttttgtagaaggatctgatggtgttttggatt
tcttcaggatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggttaattctttga
atagttcttcttgtttccacttggttgatttcacctctgagtttgatatt
tcctgccgtctactcctctgggtgaatttgcttctttttttctagagctt
tagatgtggtgtcagctgctagtagtgctctcttcccgttttttcttgaa
gcactcattagcttatgagtttccctcttagaaatgctttcattgggtcc
cacaaggtttggggacattgtgtggttcttttcataaacctcaaaagagt
cttaattgctttctaatactttcctgactaggatgattgtaagaaaggtg
ggtcatttctgtagaggtggctccgattatttgtggatgaaaacagccca
tgctggggtacgtgagatcccg
gaattccagggccaggaagcaggaatgggtgggttggtgagcagggtaag
ggaggagagtgatagggagttttctgaggtgaaaccaggaaaggggataa
catttgaaaagtaaataaagaatgtaagtaaataagtaaggagagtaaga
acaactcttcatagcaagatccaagctccccagagctaccttttgtccta
taccttgagatctggatatagaagcagcttagctagtgggtgaaagggaa
taggaaaatgagaaagaagtttaaagtggccatggctctacagctctgcc
aagcatctaaacatccatattactcaaaagaagactcaacaggctgattg
tctcaattatcagatattccattattaatatgagtcagcctatgtcttca
gatgactacattcattgcagacaatgggaataagatcggggttagggtgg
aaactcctttttcattttaaaatagattcaatgaagtcaatacaataagg
aagttgcacagagacaagttacagaaagcgttgaggtacaggataggaca
agactcattcataaataaaatctattaccctcccccccccaaaatttggt
gacaggacttaaaacctggggtgagaagaaatgtactttgcttgatctct
ttctatatgagagtcttagagtgaccttcctacccttcaacgcttaaaat
gttgtaaaataaattagcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_18949882_18950611
seq2: B6Ng01-048C11.g_67_786

seq1  GAATTCCAGGGCCAGGAAGCAGGAATGGGTGGGTTGGTGAGCAGGGTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGCCAGGAAGCAGGAATGGGTGGGTTGGTGAGCAGGGTAAG  50

seq1  GGAGGAGAGTGATAGGGAGTTTTCTGAGGTGAAACCAGGAAAGGGGATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGAGTGATAGGGAGTTTTCTGAGGTGAAACCAGGAAAGGGGATAA  100

seq1  CATTTGAAAAGTAAATAAAGAATGTAAGTAAATAAGTAAGGAGAGTAAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAAAAGTAAATAAAGAATGTAAGTAAATAAGTAAGGAGAGTAAGA  150

seq1  ACAACTCTTCATAGCAAGATCCAAGCTCCCCAGAGCTACCTTTTGTCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTCTTCATAGCAAGATCCAAGCTCCCCAGAGCTACCTTTTGTCCTA  200

seq1  TACCTTGAGATCTGGATATAGAAGCAGCTTAGCTAGTGGGTGAAAGGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTGAGATCTGGATATAGAAGCAGCTTAGCTAGTGGGTGAAAGGGAA  250

seq1  TAGGAAAATGAGAAAGAAGTTTAAAGTGGCCATGGCTCTACAGCTCTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAAATGAGAAAGAAGTTTAAAGTGGCCATGGCTCTACAGCTCTGCC  300

seq1  AAGCATCTAAACATCCATATTACTCAAAAGAAGACTCAACAGGCTGATTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATCTAAACATCCATATTACTCAAAAGAAGACTCAACAGGCTGATTG  350

seq1  TCTCAATTATCAGATATTCCATTATTAATATGAGTCAGCCTATGTCTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATTATCAGATATTCCATTATTAATATGAGTCAGCCTATGTCTTCA  400

seq1  GATGACTACATTCATTGCAGACAATGGGAATAAGATCGGGGTTAGGGTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACTACATTCATTGCAGACAATGGGAATAAGATCGGGGTTAGGGTGG  450

seq1  AAACTCCTTTTTCATTTTAAAATAGATTCAATGAAGTCAATACAATAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCCTTTTTCATTTTAAAATAGATTCAATGAAGTCAATACAATAAGG  500

seq1  AAGTTGCACAGAGACAAGTTACAGAAAGCTTTGAGGTACAGGATAGGACA  550
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AAGTTGCACAGAGACAAGTTACAGAAAGCGTTGAGGTACAGGATAGGACA  550

seq1  AGACTCATTCATAAGTAAAAATCTATTTACCCCTCCCCCCCCAAAATTTG  600
      |||||||||||||| | |||||||| ||||||  ||||||||||||||||
seq2  AGACTCATTCATAAAT-AAAATCTA-TTACCCTCCCCCCCCCAAAATTTG  598

seq1  GTGACAGGACTTAAAACCT-GGGTGAGATAGTAATGTTACTTTGCTTGAT  649
      ||||||||||||||||||| |||||||| || |||| |||||||||||||
seq2  GTGACAGGACTTAAAACCTGGGGTGAGA-AGAAATG-TACTTTGCTTGAT  646

seq1  CTATTTCTATAATGAGTAGTTCTAAGAGTGACCATTTCTAACACATTCAA  699
      || ||||||| ||||| || ||| ||||||||| || |||   | |||||
seq2  CTCTTTCTAT-ATGAG-AG-TCTTAGAGTGACC-TTCCTA--CCCTTCAA  690

seq1  AGTTTAGAATGTTGTAAAATAAATTAAGCCT  730
       | ||| |||||||||||||||||| |||||
seq2  CGCTTAAAATGTTGTAAAATAAATT-AGCCT  720