BAC Information

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BAC

Clone NameB6Ng01-049C03
Chromosome4 (Build37)
Map Location 17,293,696 - 17,434,304
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC383994, LOC100040154, LOC667212, LOC100040173
Downstream geneMmp16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-049C03.bB6Ng01-049C03.g
ACCDH873483DH873484
length1,067987
definitionDH873483|Mus musculus domesticus DNA, BAC clone: B6Ng01-049C03, 5' end.DH873484|Mus musculus domesticus DNA, BAC clone: B6Ng01-049C03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,433,216 - 17,434,304)(17,293,696 - 17,294,690)
sequence
gaattctcagctactccagtaccaagtcctggctacattcatatatcaat
ggattgaacctctgaaagtataagacagccccaataaaatgttaactttt
ataagaattgctttggtcatggtgtctctgcccagcaaaggaaaccctac
gacactggataacacctacttgcagctgccagtgggaatccagtgggcag
cttctctgagaggttaggtaaaaatttgctgtatgaagtaataacaaaac
acaggtggcagaatggtggatacacagtgtgtattggtagtcatggaggt
tattgaaaatcttttctgaagtatattcccaagaccaatacaggactcta
ttagtctcaaataatagtttttaataaagatattaatgtgcgtaaatatt
taaacatatctttactgtctaaataaaaaaatccagcctatgttcagtgc
aagaagttcattatacattggttgaattaaatactgatgcaagaaggccc
atactaaaaataaagatttagtgactttagctttgctatgtagataagcc
cactcagaatgcaaaaatgcaaaaactttgttacatagatgaataatctg
aagcttcttacttaattttctaaagataaacctaggttattgatacatac
accctttcatcaatatgattgtttaaacatgagctgaacaagaacatcac
acaattgttttaatttaaaagtaaaacatttagatattaacccaggattt
gaattctaggtgccataagctatatctactcaataaaagttaatatattt
cagtaaaaatattcatgataaaggtctatcctatccctttaacaactggt
gaagaaaacttatgttttaattaactattagttaattacctttttacact
ctagattttattctgcccctggttcaccttaaaactgtacacatctcata
cctcttcccagcccccttgtctcaacaagatgtcaacacactcactcact
gacctctaattccctcggcctccagtcgagggttagtaatcatcctgact
gacacatacctgcagtc
gaattcactatctgactttagactcatattaaattccagaatgattctga
ggtgataagaccacccaataacatccaggttggtatgagctgttccttag
ctcttcagttaccaaggccagttgcagtgttctgcctgtcagaggctcgt
tctcttgctctttaaaattgcttcccagagctgactcttatcagggtgaa
ttaaatttgggctctgcttcttgaggttattctttgtaattcttaatgac
aggttcttcctcaagatggagcccagcttctgccctcagagtcatgcact
tgacaatgtgggattcttgtccactgctgaccgatcccctctaggaatcc
ttgtctcactaaactatgctactggctctgggttatgtgagagctgtggt
tttgtcctgtggttagatcttcccatctgttttcagcagaattgcccagg
ttcctttttgcaggaattatttgttaccctctacctgctgaggagccatg
tggtcatagccagagtttgactttgtttctgtctgtgttctcatggtttt
gatcagctttcagggatctgataaatatgttcataaaattctggagcatt
tcttcctttcaatttcctgaagacattctatttgtcttattttgagtttt
ttccttgaatatgtcatattagagtttatcgattttataaatgagtatac
aaattaatggagttcatatttttcatactttatattatcattgtacttat
gaatgcctatgtttttttctcacatgagaattctcattcccttcttcaaa
gaactatttccttactctggtttcatacggatatttgtatttatttatac
aggattataggtagaatcaatatttttattctggttaggagataaacata
ttgtgtgttgttttgcttattttccctcataatccccattcttagattct
ttcgaaatttctatacttgtactactttatacataca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_17433216_17434304
seq2: B6Ng01-049C03.b_42_1108 (reverse)

seq1  GACTGCAGGTATGTGTTCAGTCAGAGATGATGTACCTAACCCTCGGACTG  50
      ||||||||||||||| |||||||| |||||| || ||||||||| |||||
seq2  GACTGCAGGTATGTG-TCAGTCAG-GATGAT-TA-CTAACCCTC-GACTG  45

seq1  GAGGCCCGAGGGAATTTAGAGGTCAGGTGAGGTGGGAGTGGTGGGTGGGG  100
      |||| ||||||||| |||||||||| ||||   | ||||     |||  |
seq2  GAGG-CCGAGGGAA-TTAGAGGTCA-GTGA---GTGAGT-----GTGTTG  84

seq1  ACATTCTTGTTGAGACAAGGGGGGCTGGGGAAGAGGTATGAGATGTGTAA  150
      ||| |||||||||||||| ||||||| ||||||||||||||||||||| |
seq2  ACA-TCTTGTTGAGACAA-GGGGGCT-GGGAAGAGGTATGAGATGTGT-A  130

seq1  CAGTTTTAAGGTGAACCAGGGGGCAGAATAAAATCTAGAGTGTAAAAAGG  200
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CAGTTTTAAGGTGAACCA-GGGGCAGAATAAAATCTAGAGTGTAAAAAGG  179

seq1  TAATTAACTAATTAGTTAATTAAAACATAAGTTTTCTTCACCAGTTGTTA  250
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TAATTAACTAA-TAGTTAATTAAAACATAAGTTTTCTTCACCAGTTGTTA  228

seq1  AAGGGATAGGATAGACCTTTATCATGAATATTTTTACTGAAATATATTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGATAGGATAGACCTTTATCATGAATATTTTTACTGAAATATATTAA  278

seq1  CTTTTATTGAGTAGATATAGCTTATGGCACCTAGAATTCAAATCCTGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATTGAGTAGATATAGCTTATGGCACCTAGAATTCAAATCCTGGGT  328

seq1  TAATATCTAAATGTTTTACTTTTAAATTAAAACAATTGTGTGATGTTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATCTAAATGTTTTACTTTTAAATTAAAACAATTGTGTGATGTTCTT  378

seq1  GTTCAGCTCATGTTTAAACAATCATATTGATGAAAGGGTGTATGTATCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGCTCATGTTTAAACAATCATATTGATGAAAGGGTGTATGTATCAA  428

seq1  TAACCTAGGTTTATCTTTAGAAAATTAAGTAAGAAGCTTCAGATTATTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTAGGTTTATCTTTAGAAAATTAAGTAAGAAGCTTCAGATTATTCA  478

seq1  TCTATGTAACAAAGTTTTTGCATTTTTGCATTCTGAGTGGGCTTATCTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGTAACAAAGTTTTTGCATTTTTGCATTCTGAGTGGGCTTATCTAC  528

seq1  ATAGCAAAGCTAAAGTCACTAAATCTTTATTTTTAGTATGGGCCTTCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAAAGCTAAAGTCACTAAATCTTTATTTTTAGTATGGGCCTTCTTG  578

seq1  CATCAGTATTTAATTCAACCAATGTATAATGAACTTCTTGCACTGAACAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGTATTTAATTCAACCAATGTATAATGAACTTCTTGCACTGAACAT  628

seq1  AGGCTGGATTTTTTTATTTAGACAGTAAAGATATGTTTAAATATTTACGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGGATTTTTTTATTTAGACAGTAAAGATATGTTTAAATATTTACGC  678

seq1  ACATTAATATCTTTATTAAAAACTATTATTTGAGACTAATAGAGTCCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAATATCTTTATTAAAAACTATTATTTGAGACTAATAGAGTCCTGT  728

seq1  ATTGGTCTTGGGAATATACTTCAGAAAAGATTTTCAATAACCTCCATGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTCTTGGGAATATACTTCAGAAAAGATTTTCAATAACCTCCATGAC  778

seq1  TACCAATACACACTGTGTATCCACCATTCTGCCACCTGTGTTTTGTTATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAATACACACTGTGTATCCACCATTCTGCCACCTGTGTTTTGTTATT  828

seq1  ACTTCATACAGCAAATTTTTACCTAACCTCTCAGAGAAGCTGCCCACTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATACAGCAAATTTTTACCTAACCTCTCAGAGAAGCTGCCCACTGG  878

seq1  ATTCCCACTGGCAGCTGCAAGTAGGTGTTATCCAGTGTCGTAGGGTTTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCACTGGCAGCTGCAAGTAGGTGTTATCCAGTGTCGTAGGGTTTCC  928

seq1  TTTGCTGGGCAGAGACACCATGACCAAAGCAATTCTTATAAAAGTTAACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGGGCAGAGACACCATGACCAAAGCAATTCTTATAAAAGTTAACA  978

seq1  TTTTATTGGGGCTGTCTTATACTTTCAGAGGTTCAATCCATTGATATATG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTGGGGCTGTCTTATACTTTCAGAGGTTCAATCCATTGATATATG  1028

seq1  AATGTAGCCAGGACTTGGTACTGGAGTAGCTGAGAATTC  1089
      |||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGCCAGGACTTGGTACTGGAGTAGCTGAGAATTC  1067

seq1: chr4_17293696_17294690
seq2: B6Ng01-049C03.g_68_1054

seq1  GAATTCACTATCTGACTTTAGACTCATATTAAATTCCAGAATGATTCTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATCTGACTTTAGACTCATATTAAATTCCAGAATGATTCTGA  50

seq1  GGTGATAAGACCACCCAATAACATCCAGGTTGGTATGAGCTGTTCCTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATAAGACCACCCAATAACATCCAGGTTGGTATGAGCTGTTCCTTAG  100

seq1  CTCTTCAGTTACCAAGGCCAGTTGCAGTGTTCTGCCTGTCAGAGGCTCGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCAGTTACCAAGGCCAGTTGCAGTGTTCTGCCTGTCAGAGGCTCGT  150

seq1  TCTCTTGCTCTTTAAAATTGCTTCCCAGAGCTGACTCTTATCAGGGTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGCTCTTTAAAATTGCTTCCCAGAGCTGACTCTTATCAGGGTGAA  200

seq1  TTAAATTTGGGCTCTGCTTCTTGAGGTTATTCTTTGTAATTCTTAATGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTTGGGCTCTGCTTCTTGAGGTTATTCTTTGTAATTCTTAATGAC  250

seq1  AGGTTCTTCCTCAAGATGGAGCCCAGCTTCTGCCCTCAGAGTCATGCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCTTCCTCAAGATGGAGCCCAGCTTCTGCCCTCAGAGTCATGCACT  300

seq1  TGACAATGTGGGATTCTTGTCCACTGCTGACCGATCCCCTCTAGGAATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAATGTGGGATTCTTGTCCACTGCTGACCGATCCCCTCTAGGAATCC  350

seq1  TTGTCTCACTAAACTATGCTACTGGCTCTGGGTTATGTGAGAGCTGTGGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTCACTAAACTATGCTACTGGCTCTGGGTTATGTGAGAGCTGTGGT  400

seq1  TTTGTCCTGTGGTTAGATCTTCCCATCTGTTTTCAGCAGAATTGCCCAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCCTGTGGTTAGATCTTCCCATCTGTTTTCAGCAGAATTGCCCAGG  450

seq1  TTCCTTTTTGCAGGAATTATTTGTTACCCTCTACCTGCTGAGGAGCCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTTGCAGGAATTATTTGTTACCCTCTACCTGCTGAGGAGCCATG  500

seq1  TGGTCATAGCCAGAGTTTGACTTTGTTTCTGTCTGTGTTCTCATGGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCATAGCCAGAGTTTGACTTTGTTTCTGTCTGTGTTCTCATGGTTTT  550

seq1  GATCAGCTTTCAGGGATCTGATAAATATGTTCATAAAATTCTGGAGCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGCTTTCAGGGATCTGATAAATATGTTCATAAAATTCTGGAGCATT  600

seq1  TCTTCCTTTCAATTTCCTGAAGACATTCTATTTGTCTTATTTTGAGTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTTTCAATTTCCTGAAGACATTCTATTTGTCTTATTTTGAGTTTT  650

seq1  TTCCTTGAATATGTCATA-TAGAGTTTATCGATTTTATAAATGAGTATAC  699
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTCCTTGAATATGTCATATTAGAGTTTATCGATTTTATAAATGAGTATAC  700

seq1  AAATTAATGGAGTTCATA-TTTTCATAC-TTATATTATCATTGTACTTTA  747
      |||||||||||||||||| ||||||||| ||||||||||||||||| |||
seq2  AAATTAATGGAGTTCATATTTTTCATACTTTATATTATCATTGTAC-TTA  749

seq1  TGAATGCCTATGTTTTTTTCTCACATGAG-ATTCTCATTCCCTTCTTCAA  796
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TGAATGCCTATGTTTTTTTCTCACATGAGAATTCTCATTCCCTTCTTCAA  799

seq1  AGCACATATTCCTTACTCTGTTTTCATAACGTATATATTGTATTTATTTA  846
      || ||   |||||||||||| |||||| ||| |||| |||||||||||||
seq2  AGAACTATTTCCTTACTCTGGTTTCAT-ACGGATAT-TTGTATTTATTTA  847

seq1  TACATGATTTATATGTAG-ATCATATATATTTATTCTGTATAGGAGATAA  895
      |||| || ||||| |||| |||| |||| |||||||||  |||||||| |
seq2  TACAGGA-TTATAGGTAGAATCA-ATATTTTTATTCTGGTTAGGAGAT-A  894

seq1  AACATATTGTGT-TTGTTTTGCCTCATTTTCCTCTCATAATTCCCCATTC  944
      |||||||||||| |||||||| || ||||||| ||||||| |||||||||
seq2  AACATATTGTGTGTTGTTTTG-CTTATTTTCC-CTCATAA-TCCCCATTC  941

seq1  TTTAGAATTCTTCTGACATTTCTATACTTGTTACTATCTTTATAACATAC  994
       |||| ||||||  || ||||||||||||| ||||| |||||| ||||||
seq2  -TTAG-ATTCTTTCGAAATTTCTATACTTG-TACTA-CTTTAT-ACATAC  986

seq1  A  995
      |
seq2  A  987