BAC Information

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BAC

Clone NameB6Ng01-050I15
Chromosome4 (Build37)
Map Location 18,330,255 - 18,331,232
singlet/doubletsinglet
Overlap genenone
Upstream geneMmp16
Downstream geneLOC667251, LOC435772, Cngb3, LOC623122
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050I15.bB6Ng01-050I15.g
ACCDH874450DH874451
length1,211965
definitionDH874450|Mus musculus domesticus DNA, BAC clone: B6Ng01-050I15, 5' end.DH874451|Mus musculus domesticus DNA, BAC clone: B6Ng01-050I15, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctatgagaatttcaaagaagacagaataccaattctcttcatact
attccacaaaatagaaacagaaggaagactatccagttcatcctatgagg
ccacaatattgattatacctaaagcccacaaagacccaatgaaaaaaaga
gaacttcagaccaatttcccttataaatattgatgcaaaaatacccaata
catttctcacaaacaaaatccaaaaacacatgaaaacaatcttctatcat
gacttcatctcagggatgcaggaatggttaaatatacctaaatcaatcaa
cataatccactctataatcaaactcaaaggaaaaaaaaaaacatgattac
ctcattagaggctgagaaagcatttgagaaaattcaacccccctttatga
taaaattcttggaatgatcaggaattcaatgcccagaattaaacatagta
aaaacaatctacagcaaaccagtagccaacatttaaactaaatggagaga
accttgaaacaatctcactaaaaacagggatgaaaaaaggctgcctactc
tctccctacctattatatattagtacttgaagtcctagccagaacaatta
gacaagaaaaggacatccaaaggatacaaattgcaaaggaagaagtcaat
gtatcactacttgcagatgatatgatagtatacttaagtgaccccaaaat
tccaccagagaactcctcaacctgataaacaacttcagcaaagtgactgg
atataaaattaattctaacaaatcagtatctttcctatactcaaaggata
aatgggctgagaaagaaattagggaaacaacacccttcacagtaatcaca
aataatacaaataccttgttgtgactctaatctagtaagtgacaaatctg
tgtgacagacttcaagtccctgagaagaattgaaaagatctcagaagatg
aagatgacatgtcatgatgcatgatatacataaaatgtcatttcaatgca
tctacatgtcagtgcctcttatcacatcatcatttctcatagaatagagg
ccattgcattcgttgataacaaaacccagatcgaaacttttcacaaataa
aactctcggaatcacattctgaccaagcgtctcgaaccttgtaaaaaaaa
tgctggatgcaacgccgactgattatagcctgatgatacatcatgcatga
cctgcaaggac
gaattcagtctccaatcaggcctttatagtctacttaaattttggacatt
gcctcttatctgtagaactgtgactctcactctgtctgtctctgtctctg
tctctgtctctgtctctgtctctgtctctgtctctgtctctctctcttga
acaaatttgcttcagaaaagtcatcattaagaatccctgctctacccttc
agcagatttaaaccttcttatatgctcttcagagttcaacaaaccaaaaa
tgcatttctcaagaacctaagaataggctggggttttagctcagttaatt
gagtgtactggcagtgaatgaagcctaaggtttggtccattgcactgcaa
gcacataatcccagcttttgggaagtggagacaggagattttgaggttca
aagtcatgctcaactaatagcatgtttaaggtcagcctgacactcatgag
accctacctaaaaacacaaaacgaaacaaatgaaaaaacacacaaaacct
cttgggagtcatgtctttgaatcatacaattaggaaatacattcccataa
tttccacaatctatgagtgtaatatcctaacttaaacaatttgaaattca
ctaatagctcccacctaataacaaagacatccactgcaaactttttatgt
caagtattgtttttctgtctgacttccaagctttgattgtccaccatttg
tattagcaggtttgggtccagataggcaattatgctattattgaatatag
tattctctgtgcagtttatctatcatgtgaacatttcctttgttgatttc
acagtgtattgaagtgtgatattaacctcagaaacatatttgtactactt
gacatagatgattgagttttatactagtaatttaaattgacttagtatat
tcatttcacactgattatacttactaacattttgatatttgttatttgct
atttggaaagttata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_18330255_18331232
seq2: B6Ng01-050I15.g_65_1029 (reverse)

seq1  TATAACTTTTCAAATTAGCAAATAACATATATCAAAATGTTTAGTAAGTA  50
      ||||||||| |||| |||||||||||| ||||||||||| ||||||||||
seq2  TATAACTTTCCAAA-TAGCAAATAACAAATATCAAAATG-TTAGTAAGTA  48

seq1  TTAATCAGTTGTGAAATTGAATATACTAAGTCAATTTAAAATTACTTAGT  100
       ||||||| ||||||| |||||||||||||||||||| ||||||| ||| 
seq2  -TAATCAG-TGTGAAA-TGAATATACTAAGTCAATTT-AAATTAC-TAG-  92

seq1  TATAAAACTCAATCATCTATGTTCAAGTTAGTACAAATATTGTTTCTGAG  150
      ||||||||||||||||||||| ||||| ||||||||||| ||||||||||
seq2  TATAAAACTCAATCATCTATG-TCAAG-TAGTACAAATA-TGTTTCTGAG  139

seq1  GTTAATATTCACACTTCAATACACTGTGAAAATCAACAAAGGAAATGTTC  200
      ||||||| |||||||||||||||||||| |||||||||||||||||||||
seq2  GTTAATA-TCACACTTCAATACACTGTG-AAATCAACAAAGGAAATGTTC  187

seq1  ACATGATAGATAAACTGCACAGAGAATACTATATTCAATAATAGCATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGATAGATAAACTGCACAGAGAATACTATATTCAATAATAGCATAAT  237

seq1  TGCCTATCTGGACCCAAACCTGCTAATACAAATGGTGGACAATCAAAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTATCTGGACCCAAACCTGCTAATACAAATGGTGGACAATCAAAGCT  287

seq1  TGGAAGTCAGACAGAAAAACAATACTTGACATAAAAAGTTTGCAGTGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGTCAGACAGAAAAACAATACTTGACATAAAAAGTTTGCAGTGGAT  337

seq1  GTCTTTGTTATTAGGTGGGAGCTATTAGTGAATTTCAAATTGTTTAAGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTTGTTATTAGGTGGGAGCTATTAGTGAATTTCAAATTGTTTAAGTT  387

seq1  AGGATATTACACTCATAGATTGTGGAAATTATGGGAATGTATTTCCTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATATTACACTCATAGATTGTGGAAATTATGGGAATGTATTTCCTAAT  437

seq1  TGTATGATTCAAAGACATGACTCCCAAGAGGTTTTGTGTGTTTTTTCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGATTCAAAGACATGACTCCCAAGAGGTTTTGTGTGTTTTTTCATT  487

seq1  TGTTTCGTTTTGTGTTTTTAGGTAGGGTCTCATGAGTGTCAGGCTGACCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCGTTTTGTGTTTTTAGGTAGGGTCTCATGAGTGTCAGGCTGACCT  537

seq1  TAAACATGCTATTAGTTGAGCATGACTTTGAACCTCAAAATCTCCTGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACATGCTATTAGTTGAGCATGACTTTGAACCTCAAAATCTCCTGTCT  587

seq1  CCACTTCCCAAAAGCTGGGATTATGTGCTTGCAGTGCAATGGACCAAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTCCCAAAAGCTGGGATTATGTGCTTGCAGTGCAATGGACCAAACC  637

seq1  TTAGGCTTCATTCACTGCCAGTACACTCAATTAACTGAGCTAAAACCCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCTTCATTCACTGCCAGTACACTCAATTAACTGAGCTAAAACCCCA  687

seq1  GCCTATTCTTAGGTTCTTGAGAAATGCATTTTTGGTTTGTTGAACTCTGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTATTCTTAGGTTCTTGAGAAATGCATTTTTGGTTTGTTGAACTCTGA  737

seq1  AGAGCATATAAGAAGGTTTAAATCTGCTGAAGGGTAGAGCAGGGATTCTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCATATAAGAAGGTTTAAATCTGCTGAAGGGTAGAGCAGGGATTCTT  787

seq1  AATGATGACTTTTCTGAAGCAAATTTGTTCAAGAGAGAGAGACAGAGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGACTTTTCTGAAGCAAATTTGTTCAAGAGAGAGAGACAGAGACA  837

seq1  GAGACAGAGACAGAGACAGAGACAGAGACAGAGACAGAGACAGACAGAGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGAGACAGAGACAGAGACAGAGACAGAGACAGAGACAGACAGAGT  887

seq1  GAGAGTCACAGTTCTACAGATAAGAGGCAATGTCCAAAATTTAAGTAGAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTCACAGTTCTACAGATAAGAGGCAATGTCCAAAATTTAAGTAGAC  937

seq1  TATAAAGGCCTGATTGGAGACTGAATTC  978
      ||||||||||||||||||||||||||||
seq2  TATAAAGGCCTGATTGGAGACTGAATTC  965