BAC Information

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BAC

Clone NameB6Ng01-050O01
Chromosome4 (Build37)
Map Location 45,466,016 - 45,640,818
singlet/doubletdoublet
Overlap geneShb, LOC100040140
Upstream genePax5, 5730488B01Rik, LOC545618, Zcchc7, D4Wsu132e, Grhpr, Zbtb5, 1700055D18Rik, Polr1e, Fbxo10, 1110019J04Rik, Frmpd1, Rg9mtd3, Exosc3, LOC666325, Wdr32, Mcart1
Downstream geneLOC100040557, Gm829, LOC100040567, LOC100040580, Aldh1b1, Igfbpl1, 1300002K09Rik, Tdrd7, Tmod1, BC057893, AU014645, Xpa, LOC624430, LOC666379, LOC666389, Foxe1, 5830415F09Rik, Hemgn, LOC100040643, Anp32b, Nans, Trim14, Coro2a, Tbc1d2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-050O01.bB6Ng01-050O01.g
ACCDH874695DH874696
length1,165651
definitionDH874695|Mus musculus domesticus DNA, BAC clone: B6Ng01-050O01, 5' end.DH874696|Mus musculus domesticus DNA, BAC clone: B6Ng01-050O01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,466,016 - 45,467,201)(45,640,168 - 45,640,818)
sequence
gaattccacacaggaaaagaagacgtttgcagagacccttctaacagcac
gtaatggagctggtgctttcggtttcttaagactaataaatgaactcatt
aatatgtcagacagaaaaaccaaccagagaaacctgtccctcaataatat
ctagccaaaggagagagaggtccctacagctctaaccctgcccccacact
tcctttggtagacctgcatgttaaacattaattacggctgttactcatta
cacagcaaagagcttcccctacaaacacaattgttaatttcctcacaggc
ccaaggcattctgggaggccatgaaggagacaggaggcattctggaactc
tagagagcctgttgtgaggcagcacagggctggagtgtggagagcgctgt
ggccaggtttgagactccctgtgggaccctctgcagactctgggtcccca
aggaggcacaaggagcaggaagtgtgagccatgcccagagcacacagcac
cagggtactaacttcaaggtatctgcagctgtgggggcaatgaccagacc
aatgctaaggccaaagagcaaatggagcaattgcttccacctcagggatc
tcccaagctaccctgtaccaggttcaaatgaggccaatgcaacggtggtg
ggtggtgaagatactgttcattcagatgggcccaagttcactgctatggg
actgcaggtgagctgctgactgtctgagtttcagtacgttcatttatgtt
accacagtgaaacaacacccacacggcaggcttgacagggttaattcaaa
ccaggttcgtaaccactgctcaataaaagctggcttcctgtccattcctt
cttccctcttaccatactggggttcttttaaataactcagccaactgagc
tgcctcggatgactctcacctgttagaagcagcacacacacacagacatc
actttccctttgtctttcaaaggccttgataatgtgaggagtcaaactcc
tgagggctacccacgggcacagcaccagcaccccatgagatatcatgcaa
cggtgcacctggctgttctggaacgactatccctagaatattgacaggaa
gctcagtccattcctgaagccgaagggaccgtttgttaggggaggtatcg
gaaggctaacatggt
gaattctatgtaatggctccatgacacatgtaccgaggatgatctgatcc
cctcagataccctggagggagagatgccaaatttccctacctgtaaagcc
cagtcacattaacactggagaatacacgcatgcgcacatgtgctgcaggg
gctgagctagcttataagtttggtcaggacagacttcgtctagaaataag
aactacaaatgcctgtaggtgtgtggctgaagagcctgcagggaagagac
ttcagaacctggtctttcaggttgtagagacttggttctgtttttcaaca
aactgaaaacaacacagagaactcctatatgaaattcttcttaaaaatta
aaaagtttaagcaaaaatgtttacattttaaagaaccgacttattttatt
ctatatatgaatgttctgcttgcaggtggaccacatgcacacctggtagc
caagaaagccagatcccctggaactggagttatgaaccattgtgagctgc
tacctggctgttggaagctgaacctgggtcctctgcaagagcagcaagtg
ctcttagtcactgaaccatctctccagcccctgtttcttaaaattatatg
caagtgtgttcagggcagaggtgaggcagttggggtggatgggattttgt
g
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_45466016_45467201
seq2: B6Ng01-050O01.b_46_1210

seq1  GAATTCCACACAGGAAAAGAAGACGTTTGCAGAGACCCTTCTAACAGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACACAGGAAAAGAAGACGTTTGCAGAGACCCTTCTAACAGCAC  50

seq1  GTAATGGAGCTGGTGCTTTCGGTTTCTTAAGACTAATAAATGAACTCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGGAGCTGGTGCTTTCGGTTTCTTAAGACTAATAAATGAACTCATT  100

seq1  AATATGTCAGACAGAAAAACCAACCAGAGAAACCTGTCCCTCAATAATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTCAGACAGAAAAACCAACCAGAGAAACCTGTCCCTCAATAATAT  150

seq1  CTAGCCAAAGGAGAGAGAGGTCCCTACAGCTCTAACCCTGCCCCCACACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCAAAGGAGAGAGAGGTCCCTACAGCTCTAACCCTGCCCCCACACT  200

seq1  TCCTTTGGTAGACCTGCATGTTAAACATTAATTACGGCTGTTACTCATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTGGTAGACCTGCATGTTAAACATTAATTACGGCTGTTACTCATTA  250

seq1  CACAGCAAAGAGCTTCCCCTACAAACACAATTGTTAATTTCCTCACAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAAAGAGCTTCCCCTACAAACACAATTGTTAATTTCCTCACAGGC  300

seq1  CCAAGGCATTCTGGGAGGCCATGAAGGAGACAGGAGGCATTCTGGAACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGCATTCTGGGAGGCCATGAAGGAGACAGGAGGCATTCTGGAACTC  350

seq1  TAGAGAGCCTGTTGTGAGGCAGCACAGGGCTGGAGTGTGGAGAGCGCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAGCCTGTTGTGAGGCAGCACAGGGCTGGAGTGTGGAGAGCGCTGT  400

seq1  GGCCAGGTTTGAGACTCCCTGTGGGACCCTCTGCAGACTCTGGGTCCCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGTTTGAGACTCCCTGTGGGACCCTCTGCAGACTCTGGGTCCCCA  450

seq1  AGGAGGCACAAGGAGCAGGAAGTGTGAGCCATGCCCAGAGCACACAGCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGCACAAGGAGCAGGAAGTGTGAGCCATGCCCAGAGCACACAGCAC  500

seq1  CAGGGTACTAACTTCAAGGTATCTGCAGCTGTGGGGGCAATGACCAGACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGTACTAACTTCAAGGTATCTGCAGCTGTGGGGGCAATGACCAGACC  550

seq1  AATGCTAAGGCCAAAGAGCAAATGGAGCAATTGCTTCCACCTCAGGGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCTAAGGCCAAAGAGCAAATGGAGCAATTGCTTCCACCTCAGGGATC  600

seq1  TCCCAAGCTACCCTGTACCAGGTTCAAATGAGGCCAATGCAACGGTGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGCTACCCTGTACCAGGTTCAAATGAGGCCAATGCAACGGTGGTG  650

seq1  GGTGGTGAAGATACTGTTCATTCAGATGGGCCCAAGTTCACTGCTATGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTGAAGATACTGTTCATTCAGATGGGCCCAAGTTCACTGCTATGGG  700

seq1  ACTGCAGGTGAGCTGCTGACTGTCTGAGTTTCAGTACGTTCATTTATGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCAGGTGAGCTGCTGACTGTCTGAGTTTCAGTACGTTCATTTATGTT  750

seq1  ACCACAGTGAAACAACACCCACACGGCAGGGCTTGACAGGGTTAATTCAA  800
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ACCACAGTGAAACAACACCCACACGGCA-GGCTTGACAGGGTTAATTCAA  799

seq1  ACCAGGTTCGTAACCACTGCTCAATAAAAGCTGGCTTCCTGTCCATTCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGTTCGTAACCACTGCTCAATAAAAGCTGGCTTCCTGTCCATTCCT  849

seq1  TCTTCCCCTCTTACCATACTGGGGTTCTTTTAAATAACTCAGCCAACTGA  900
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTT-CCCTCTTACCATACTGGGGTTCTTTTAAATAACTCAGCCAACTGA  898

seq1  GCTGCCTCGGATGACTCTCACCTGTTAGGAAGCAGCCACACACACACAAG  950
      ||||||||||||||||||||||||||| ||||||| ||||||||||| ||
seq2  GCTGCCTCGGATGACTCTCACCTGTTA-GAAGCAG-CACACACACAC-AG  945

seq1  ACATCACTTTCCCTTTGTCCTTTCAAAGGCCCTTGATAATGTAGAGGAGT  1000
      |||||||||||||||||| |||||||||| |||||||||||| |||||||
seq2  ACATCACTTTCCCTTTGT-CTTTCAAAGG-CCTTGATAATGT-GAGGAGT  992

seq1  CAAAACTCCAGAGGGGCTACCCACGGGGCACAGCACCAGCACCCCATGAG  1050
      | ||||||| || ||||||||||| |||||||||||||||||||||||||
seq2  C-AAACTCCTGA-GGGCTACCCAC-GGGCACAGCACCAGCACCCCATGAG  1039

seq1  ATTACCATGACAACGGTGCACCTGGCTGTTCTGGAACAGACTACCCACAG  1100
      | || |||| ||||||||||||||||||||||||||| ||||| ||  ||
seq2  A-TATCATG-CAACGGTGCACCTGGCTGTTCTGGAAC-GACTATCCCTAG  1086

seq1  AATA-TGACAGGAGGCTCAGCCCAATCCAGGAGGCCGAGAGGGGACCGTT  1149
      |||| |||||||| |||||| ||| ||| | || |   || |||||||||
seq2  AATATTGACAGGAAGCTCAGTCCATTCCTGAAGCC---GAAGGGACCGTT  1133

seq1  GTGTTAGGGGAGGTTTTCTGGAAGGGCTAACACTGGT  1186
       ||||||||||||| |   |||| |||||||| ||||
seq2  -TGTTAGGGGAGGTAT--CGGAA-GGCTAACA-TGGT  1165

seq1: chr4_45640168_45640818
seq2: B6Ng01-050O01.g_65_715 (reverse)

seq1  CACAAAATCCCATCCACCCCAACTGCCTCACCTCTGCCCTGAACACACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAATCCCATCCACCCCAACTGCCTCACCTCTGCCCTGAACACACTT  50

seq1  GCATATAATTTTAAGAAACAGGGGCTGGAGAGATGGTTCAGTGACTAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATAATTTTAAGAAACAGGGGCTGGAGAGATGGTTCAGTGACTAAGA  100

seq1  GCACTTGCTGCTCTTGCAGAGGACCCAGGTTCAGCTTCCAACAGCCAGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTGCTGCTCTTGCAGAGGACCCAGGTTCAGCTTCCAACAGCCAGGT  150

seq1  AGCAGCTCACAATGGTTCATAACTCCAGTTCCAGGGGATCTGGCTTTCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGCTCACAATGGTTCATAACTCCAGTTCCAGGGGATCTGGCTTTCTT  200

seq1  GGCTACCAGGTGTGCATGTGGTCCACCTGCAAGCAGAACATTCATATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACCAGGTGTGCATGTGGTCCACCTGCAAGCAGAACATTCATATATA  250

seq1  GAATAAAATAAGTCGGTTCTTTAAAATGTAAACATTTTTGCTTAAACTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAAATAAGTCGGTTCTTTAAAATGTAAACATTTTTGCTTAAACTTT  300

seq1  TTAATTTTTAAGAAGAATTTCATATAGGAGTTCTCTGTGTTGTTTTCAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTTAAGAAGAATTTCATATAGGAGTTCTCTGTGTTGTTTTCAGT  350

seq1  TTGTTGAAAAACAGAACCAAGTCTCTACAACCTGAAAGACCAGGTTCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGAAAAACAGAACCAAGTCTCTACAACCTGAAAGACCAGGTTCTGA  400

seq1  AGTCTCTTCCCTGCAGGCTCTTCAGCCACACACCTACAGGCATTTGTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTTCCCTGCAGGCTCTTCAGCCACACACCTACAGGCATTTGTAGT  450

seq1  TCTTATTTCTAGACGAAGTCTGTCCTGACCAAACTTATAAGCTAGCTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATTTCTAGACGAAGTCTGTCCTGACCAAACTTATAAGCTAGCTCAG  500

seq1  CCCCTGCAGCACATGTGCGCATGCGTGTATTCTCCAGTGTTAATGTGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTGCAGCACATGTGCGCATGCGTGTATTCTCCAGTGTTAATGTGACT  550

seq1  GGGCTTTACAGGTAGGGAAATTTGGCATCTCTCCCTCCAGGGTATCTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTTACAGGTAGGGAAATTTGGCATCTCTCCCTCCAGGGTATCTGAG  600

seq1  GGGATCAGATCATCCTCGGTACATGTGTCATGGAGCCATTACATAGAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCAGATCATCCTCGGTACATGTGTCATGGAGCCATTACATAGAATT  650

seq1  C  651
      |
seq2  C  651