BAC Information

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BAC

Clone NameB6Ng01-053F20
Chromosome4 (Build37)
Map Location 65,421,890 - 65,540,307
singlet/doubletdoublet
Overlap geneAstn2
Upstream genePappa, Trim32
Downstream geneLOC667499, Tlr4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053F20.bB6Ng01-053F20.g
ACCDH876435DH876436
length1,2021,103
definitionDH876435|Mus musculus domesticus DNA, BAC clone: B6Ng01-053F20, 5' end.DH876436|Mus musculus domesticus DNA, BAC clone: B6Ng01-053F20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,421,890 - 65,423,102)(65,539,203 - 65,540,307)
sequence
gaattcagcatgaactgttgcttgaaaacagagtgagggcagttggcttt
cttggtcccaaagagcctgttaaatgctgcctggaatagtcatgagtggg
gaaggccaaactgctcccccaacaacccctcccatcccaatcctcctccc
tttcaaactttatctgtcaacaaggccaactagtccagcaactaatactg
aaattgatttgttcaaacaggctaggcaagaccccataattactggaagt
tttaatcaactcacgcaagttcagttgccattcaatttgtactgggcctt
gatgctgccacgaagggaaggactgtattgtactaagaatgaaagggatc
aataggtcctgactatggaatagcagctgtagtccccaccagggtcctcc
agccttacggtagaaatgtcagagcattccccaattcctgggagaggtcc
atgcacaaaaccaaatccccatcccatgcagacaccacaaacagtttcta
ttctcttcaggtttcaagctgtgggcaaaggtgtccatgttctggttgtc
cttgtcttcctaaagaaacctacatgccttatattacagttcctatggtt
ttgtgcatctcttcctgacctttgacattatagtattcaggagacaaagg
ggaatgaagtgtagtatagaagctgtgtggcatcgaacaactaagggcat
ctcttttctgctggctttaaaatagactcattgataaataatggctttct
ggggttgtgggtaatatgtagtcccatcacaggtaataaatacttatggg
cagtctccttcttcttttgattatttgttattatattttgtgctgctggg
gatggaactctgggtctcacacatgccaggcaaatagttttccgctgtgc
ttcatgtctctcctctgtatcccttctgatggactggtcagaaaaaaaaa
attcttctcccccatgctgaaaataattctgctatgcagtctgtcgccca
gggaatccagactgtctcaatagtcttgttttcagtgttgaaagcatgca
atgcacttggttaagcaagaactagcctgtacttctctgggttagcacat
tagaaagttgcaggaggtaacctagatctttcatagcactagtcttaatt
tttcaatgtaaaacagaaatttttaaaacaatcgaatgtaatagaaaagt
aa
gaattcatatttgaatcctgttgtgtctagagaacactgtttccttgatg
ttaacaactactggatcgcacaatctttctgtcctgtcttccacaaagat
ccatgagccttgggaggaaggatatgatatttatgccccatttagaactg
cacacaacttactaaagtgcattttaaaaagaaaaaaagagcacaatagt
gttcaatgtggtagcatcggatgaaaataaatgtaataaattgctataaa
ataaaaatatagactatttgtcatatatgaacataaaaaataaataacca
gaacctacaccaagttagtattttccatcaagacagtaaaataaatttta
tcttgaagaaattagaaaagatccaggatcttagtggtcaatactacata
gtctccaatctacccagaagatctatgtaccatttcaggaaggtttccag
atatagtatatatacaataactctcacttatggtaaatgtgtatatcaat
gactttgatatatttctaaagttgtgtagccatcaaactagatctgagtt
tgaaccttttgtgtctgtcttctttagatgagttgagctatagataattt
ttttattggcctcttgagtgagattcagtcctctaggttactctagaaaa
gaaagtagtagcagtagggatgaagatctgtccatctttgtcccaagcat
gagtgccttggtctctgtatccatataatcatacagtcaccatgaattct
ggcccttctgtctttcctcttctcccttagagccaacattggtacataaa
atattaggtgtttttctcacagtcccttctctgtaatctatgagctcctt
tgacatctataatcataggtgggtttatctttataaatcacatttaataa
aggcctatagcaggacctggcacataacaaatacatattttagatggtta
aggcacttaggtcattatcagttctaactctactacagaaacagtgctct
ttccttattcctgtaggatgtaaccattctgcagagactaaaagggaaag
tttcggcaaagtcccaaaaatgacggtttgggacatattcggcatttagc
aat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_65421890_65423102
seq2: B6Ng01-053F20.b_40_1241

seq1  GAATTCAGCATGAACTGTTGCTTGAAAACAGAGTGAGGGCAGTTGGCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGCATGAACTGTTGCTTGAAAACAGAGTGAGGGCAGTTGGCTTT  50

seq1  CTTGGTCCCAAAGAGCCTGTTAAATGCTGCCTGGAATAGTCATGAGTGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTCCCAAAGAGCCTGTTAAATGCTGCCTGGAATAGTCATGAGTGGG  100

seq1  GAAGGCCAAACTGCTCCCCCAACAACCCCTCCCATCCCAATCCTCCTCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCCAAACTGCTCCCCCAACAACCCCTCCCATCCCAATCCTCCTCCC  150

seq1  TTTCAAACTTTATCTGTCAACAAGGCCAACTAGTCCAGCAACTAATACTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAACTTTATCTGTCAACAAGGCCAACTAGTCCAGCAACTAATACTG  200

seq1  AAATTGATTTGTTCAAACAGGCTAGGCAAGACCCCATAATTACTGGAAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGATTTGTTCAAACAGGCTAGGCAAGACCCCATAATTACTGGAAGT  250

seq1  TTTAATCAACTCACGCAAGTTCAGTTGCCATTCAATTTGTACTGGGCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCAACTCACGCAAGTTCAGTTGCCATTCAATTTGTACTGGGCCTT  300

seq1  GATGCTGCCACGAAGGGAAGGACTGTATTGTACTAAGAATGAAAGGGATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGCCACGAAGGGAAGGACTGTATTGTACTAAGAATGAAAGGGATC  350

seq1  AATAGGTCCTGACTATGGAATAGCAGCTGTAGTCCCCACCAGGGTCCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGTCCTGACTATGGAATAGCAGCTGTAGTCCCCACCAGGGTCCTCC  400

seq1  AGCCTTACGGTAGAAATGTCAGAGCATTCCCCAATTCCTGGGAGAGGTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTACGGTAGAAATGTCAGAGCATTCCCCAATTCCTGGGAGAGGTCC  450

seq1  ATGCACAAAACCAAATCCCCATCCCATGCAGACACCACAAACAGTTTCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACAAAACCAAATCCCCATCCCATGCAGACACCACAAACAGTTTCTA  500

seq1  TTCTCTTCAGGTTTCAAGCTGTGGGCAAAGGTGTCCATGTTCTGGTTGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTCAGGTTTCAAGCTGTGGGCAAAGGTGTCCATGTTCTGGTTGTC  550

seq1  CTTGTCTTCCTAAAGAAACCTACATGCCTTATATTACAGTTCCTATGGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCTTCCTAAAGAAACCTACATGCCTTATATTACAGTTCCTATGGTT  600

seq1  TTGTGCATCTCTTCCTGACCTTTGACATTATAGTATTCAGGAGACAAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCATCTCTTCCTGACCTTTGACATTATAGTATTCAGGAGACAAAGG  650

seq1  GGAATGAAGTGTAGTATAGAAGCTGTGTGGCATCGAACAACTAAGGGCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGAAGTGTAGTATAGAAGCTGTGTGGCATCGAACAACTAAGGGCAT  700

seq1  CTCTTTTCTGCTGGCTTTAAAATAGACTCATTGATAAATAATGGCTTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTCTGCTGGCTTTAAAATAGACTCATTGATAAATAATGGCTTTCT  750

seq1  GGGGTTGTGGGTAATATGTAGTCCCATCACAGGTAATAAATACTTATGGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTGTGGGTAATATGTAGTCCCATCACAGGTAATAAATACTTATGGG  800

seq1  CAGTCTCCTTCTTCTTTTGATTATTTGTTATTATATTTTGTGCTGCTGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTCCTTCTTCTTTTGATTATTTGTTATTATATTTTGTGCTGCTGGG  850

seq1  GATGGAACTCTGGGTCTCACACATGCCAGGCAAATAGTTTTCCGCTGTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAACTCTGGGTCTCACACATGCCAGGCAAATAGTTTTCCGCTGTGC  900

seq1  TTCATGTCTCTCCTCTGTATCCCTTCTGATGGACTGGTCAGAAAAAAAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGTCTCTCCTCTGTATCCCTTCTGATGGACTGGTCAGAAAAAAAAA  950

seq1  ATTCTTCTCTCCCATGCTG-AGATAATTCTTGCTATGCAGTCTGTCGCCC  999
      ||||||||| ||||||||| | ||||||| ||||||||||||||||||||
seq2  ATTCTTCTCCCCCATGCTGAAAATAATTC-TGCTATGCAGTCTGTCGCCC  999

seq1  AGGGAATCCAGACTGTCTCAAATAGTCTTGTGTTCAGTGTCGAAAGGCAT  1049
      ||||||||||||||||||| ||||||||||| |||||||| |||| ||||
seq2  AGGGAATCCAGACTGTCTC-AATAGTCTTGTTTTCAGTGTTGAAA-GCAT  1047

seq1  GCAAGGCAC-TGGTTAGGC-AGGACTAGGCCTGTACTTCTCCTGGTGTAG  1097
      |||| |||| |||||| || || |||| |||||||||||| ||||  |||
seq2  GCAATGCACTTGGTTAAGCAAGAACTA-GCCTGTACTTCT-CTGGGTTAG  1095

seq1  CCACTTAG-AAGTTGCAGGAGGTTATCTAGATCTTTCATTAGCACTTTAG  1146
      |   |||| |||||||||||||| | |||||||||||| ||||||  |||
seq2  CACATTAGAAAGTTGCAGGAGGTAACCTAGATCTTTCA-TAGCAC--TAG  1142

seq1  TCCTTAATTTTTTCAATGTAAAACAAGAATATTTTATAACTAGTCAGAAT  1196
      | ||||| |||||||||||||||| ||||  ||||| ||| | || ||| 
seq2  T-CTTAA-TTTTTCAATGTAAAAC-AGAAATTTTTAAAAC-AATC-GAA-  1186

seq1  TGTAATAGAAAAAGTAA  1213
      |||||||| ||||||||
seq2  TGTAATAG-AAAAGTAA  1202

seq1: chr4_65539203_65540307
seq2: B6Ng01-053F20.g_68_1170 (reverse)

seq1  ATTGCTAAATAGCAGTAATA-GTCCCAAACTGTCATTTTTGGAACTTTGC  49
      |||||||||| || | |||| ||||||||| ||||||||||| |||||||
seq2  ATTGCTAAAT-GCCG-AATATGTCCCAAACCGTCATTTTTGGGACTTTGC  48

seq1  TCGTAACTTTCCCCTTTTGGTCTCTGCAAGATGGTTACATCCTACAGGAA  99
       || |||||| ||||||| |||||||||  ||||||||||||||||||||
seq2  -CGAAACTTT-CCCTTTTAGTCTCTGCAGAATGGTTACATCCTACAGGAA  96

seq1  TAAGGAATGAGCACTGTTTCTGTAGTAGAGTTAGAACTGATAATGTACCT  149
      ||||||| ||||||||||||||||||||||||||||||||||||| ||||
seq2  TAAGGAAAGAGCACTGTTTCTGTAGTAGAGTTAGAACTGATAATG-ACCT  145

seq1  AAGTGCCTTAACCATCTTAAATATGTATTTGTTATGTGCCAGGTCCTGCT  199
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAGTGCCTTAACCATCTAAAATATGTATTTGTTATGTGCCAGGTCCTGCT  195

seq1  ATAGGCATTTATTAAATGTGATTTATAAAGATAAA-CCACATATGATTAT  248
      |||||| |||||||||||||||||||||||||||| |||| |||||||||
seq2  ATAGGCCTTTATTAAATGTGATTTATAAAGATAAACCCACCTATGATTAT  245

seq1  AGATGTC-AAGGAGCTCATAGATTACAGAGAAGGGACTGTGAGAAAAACA  297
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTCAAAGGAGCTCATAGATTACAGAGAAGGGACTGTGAGAAAAACA  295

seq1  CCTAATAATTTATGTACCAATGTTGGCTCTAAGGGAGAAGAGGAAAGACA  347
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAATATTTTATGTACCAATGTTGGCTCTAAGGGAGAAGAGGAAAGACA  345

seq1  GAAGGGCCAGAATTCATGGTGACTGTATGATTATATGGATACAGAGACCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGCCAGAATTCATGGTGACTGTATGATTATATGGATACAGAGACCA  395

seq1  AGGCACTCATGCTTGGGACAAAGATGGACAGATCTTCATCCCTACTGCTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACTCATGCTTGGGACAAAGATGGACAGATCTTCATCCCTACTGCTA  445

seq1  CTACTTTCTTTTCTAGAGTAACCTAGAGGACTGAATCTCACTCAAGAGGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTCTTTTCTAGAGTAACCTAGAGGACTGAATCTCACTCAAGAGGC  495

seq1  CAATAAAAAAATTATCTATAGCTCAACTCATCTAAAGAAGACAGACACAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAAAAATTATCTATAGCTCAACTCATCTAAAGAAGACAGACACAA  545

seq1  AAGGTTCAAACTCAGATCTAGTTTGATGGCTACACAACTTTAGAAATATA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTCAAACTCAGATCTAGTTTGATGGCTACACAACTTTAGAAATATA  595

seq1  TCAAAGTCATTGATATACACATTTACCATAAGTGAGAGTTATTGTATATA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTCATTGATATACACATTTACCATAAGTGAGAGTTATTGTATATA  645

seq1  TACTATATCTGGAAACCTTCCTGAAATGGTACATAGATCTTCTGGGTAGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATATCTGGAAACCTTCCTGAAATGGTACATAGATCTTCTGGGTAGA  695

seq1  TTGGAGACTATGTAGTATTGACCACTAAGATCCTGGATCTTTTCTAATTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGACTATGTAGTATTGACCACTAAGATCCTGGATCTTTTCTAATTT  745

seq1  CTTCAAGATAAAATTTATTTTACTGTCTTGATGGAAAATACTAACTTGGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGATAAAATTTATTTTACTGTCTTGATGGAAAATACTAACTTGGT  795

seq1  GTAGGTTCTGGTTATTTATTTTTTATGTTCATATATGACAAATAGTCTAT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTTCTGGTTATTTATTTTTTATGTTCATATATGACAAATAGTCTAT  845

seq1  ATTTTTATTTTATAGCAATTTATTACATTTATTTTCATCCGATGCTACCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTATTTTATAGCAATTTATTACATTTATTTTCATCCGATGCTACCA  895

seq1  CATTGAACACTATTGTGCTCTTTTTTTCTTTTTAAAATGCACTTTAGTAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAACACTATTGTGCTCTTTTTTTCTTTTTAAAATGCACTTTAGTAA  945

seq1  GTTGTGTGCAGTTCTAAATGGGGCATAAATATCATATCCTTCCTCCCAAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGTGCAGTTCTAAATGGGGCATAAATATCATATCCTTCCTCCCAAG  995

seq1  GCTCATGGATCTTTGTGGAAGACAGGACAGAAAGATTGTGCGATCCAGTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATGGATCTTTGTGGAAGACAGGACAGAAAGATTGTGCGATCCAGTA  1045

seq1  GTTGTTAACATCAAGGAAACAGTGTTCTCTAGACACAACAGGATTCAAAT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTAACATCAAGGAAACAGTGTTCTCTAGACACAACAGGATTCAAAT  1095

seq1  ATGAATTC  1105
      ||||||||
seq2  ATGAATTC  1103