BAC Information

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BAC

Clone NameB6Ng01-053H20
Chromosome4 (Build37)
Map Location 142,599,115 - 142,771,693
singlet/doubletdoublet
Overlap gene6330411D24Rik, Prdm2, LOC666018
Upstream geneTmem51, 9030409G11Rik, EG665983, LOC546484
Downstream geneEG626575, LOC433776, Pdpn, Lrrc38, LOC621961, Pramel1, 4732496O08Rik, Oog4, LOC666015, LOC626700, OTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185, LOC277668, LOC100040924, OTTMUSG00000010333, LOC277666, OTTMUSG00000010009, OTTMUSG00000010328, OTTMUSG00000010433, LOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-053H20.bB6Ng01-053H20.g
ACCDH876523DH876524
length1,0581,024
definitionDH876523|Mus musculus domesticus DNA, BAC clone: B6Ng01-053H20, 5' end.DH876524|Mus musculus domesticus DNA, BAC clone: B6Ng01-053H20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(142,599,115 - 142,600,147)(142,770,663 - 142,771,693)
sequence
gaattcacttcttaaaggttctaaaaccttttccaaaccagtgccatcag
ctacagagtgttcaaacacagactgatgagagacagttcacagtcaaacc
acaacaagctataactctgctagagtgtccacctagaacatgcaaaatcc
tgggttctatctctagtaccacaaaagtgtgtgtctctgtgtctctgtgt
gtgtccatgtgtgtgtgtgtgtttctaagtagtttgaagtgatagctgga
gcctagagaagggaagtgtcttttctacagacacacagtgagccagtgaa
agagttgagagcattatcatctgccaagggcacagagtattcaacttgga
ggctgtaagagagccaaaggcctgagatctgctctctgcactcacaggtt
ggcgagtgaagagtccaggctcagcacggtgtcgagaacctcgtggccac
tgtggagggcatgagttccacatgctttcagataagcactaggaaaaaat
caagaaggttaaatgctcagggttgtctcttcaacaaaagacatgtataa
cctgttttcctcccagaagactgggaatggacgtagctatagcctggtaa
cctgtgctgtctgtagggccaggtcacacctgactctcccggactctttg
tcccagacccttcctccctagtcttttatcttaagcacagtttctcggtc
agtagaagccatccttgggaagctggtcctgccattataaggtgccacat
cccatcgtctagatgcagggatacagaatgcatcctaaggaatactgaac
ccagtggagccagcccaagagaaaggccacttgcgcttcaggtcacagag
ctacagatgcagcactatcagatgccacttccatgaacccccacagcaca
gggggagcctgaggggtctgaacacttccctgtccagttaatgcaacttg
tagcagaaaactcataagtacctatttcatattttgatttcaatctcaaa
aaaagggatgttggaaggacgtatggattattaatgtatgtaaggaagga
tgaaggga
gaattccaggatactctgggctatacggagaaacccttgtcttgaaaaac
aatcaaaaattaaaaatgcttcattgctgtaagaaaattagtctttagtt
ttcagtctgatttggaaatgattctaaaagctacatcctggttttccttg
ttgataccagtatccttattccttacataaacatttaatactaatcttat
ttaagactctgatgaattccagctaagttttgaggcataattctgtattt
ctgtcaactctgagatattgtgatctttgctgttcagtggcctgatacac
aacggtcagctattgctccttggaaagtcccacttgaagtgagggctaac
agtgagctgtcactctctatagaatgtccaacctactcaggttgctggag
ggatacaggagggaggcagcatctgatgggtcaaatggccttcatggagt
gtggcaaaattatccttttagggttgtagtgtattgctggtagcctttga
tttagtaacaggtggaagctgtgttctgctgcccagttctgtgggagcac
tgttagagagcagtgcagtgttggggacttacatattttgaaagtggata
caggtggctggaacagaccagaccctggttcgaaggttgctagtgtttca
ctactaggctcagcaagtgatacagcagctccagacctgtccccttctgc
tttgtgcactccaggttcagtagagcaatgcaaagcaaaataaaaaacac
tgctggttttcttccttttgctatgacccttctgctgtttgccttgcaga
acacttgagtctgtggcagtcactgagactctggctgaggtacctgaaca
cgtgcttcgaggacttccagagaagtaagacttttaccatctgcgtcgac
aagactcggattggtgagtactcttgtgtaggagtcagtagcaaagagta
gactgcttcctgggggagcaaggatcatgctagatagtatatgccaaata
agggaaagctgaccctcacttaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_142599115_142600147
seq2: B6Ng01-053H20.b_40_1097

seq1  GAATTCACTTCTTAAAGGTTCTAAAACCTTTTCCAAACCAGTGCCATCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTCTTAAAGGTTCTAAAACCTTTTCCAAACCAGTGCCATCAG  50

seq1  CTACAGAGTGTTCAAACACAGACTGATGAGAGACAGTTCACAGTCAAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGAGTGTTCAAACACAGACTGATGAGAGACAGTTCACAGTCAAACC  100

seq1  ACAACAAGCTATAACTCTGCTAGAGTGTCCACCTAGAACATGCAAAATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAAGCTATAACTCTGCTAGAGTGTCCACCTAGAACATGCAAAATCC  150

seq1  TGGGTTCTATCTCTAGTACCACAAAAGTGTGTGTCTCTGTGTCTCTGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTCTATCTCTAGTACCACAAAAGTGTGTGTCTCTGTGTCTCTGTGT  200

seq1  GTGTCCATGTGTGTGTGTGTGTTTCTAAGTAGTTTGAAGTGATAGCTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCATGTGTGTGTGTGTGTTTCTAAGTAGTTTGAAGTGATAGCTGGA  250

seq1  GCCTAGAGAAGGGAAGTGTCTTTTCTACAGACACACAGTGAGCCAGTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAGAGAAGGGAAGTGTCTTTTCTACAGACACACAGTGAGCCAGTGAA  300

seq1  AGAGTTGAGAGCATTATCATCTGCCAAGGGCACAGAGTATTCAACTTGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTGAGAGCATTATCATCTGCCAAGGGCACAGAGTATTCAACTTGGA  350

seq1  GGCTGTAAGAGAGCCAAAGGCCTGAGATCTGCTCTCTGCACTCACAGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTAAGAGAGCCAAAGGCCTGAGATCTGCTCTCTGCACTCACAGGTT  400

seq1  GGCGAGTGAAGAGTCCAGGCTCAGCACGGTGTCGAGAACCTCGTGGCCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGAGTGAAGAGTCCAGGCTCAGCACGGTGTCGAGAACCTCGTGGCCAC  450

seq1  TGTGGAGGGCATGAGTTCCACATGCTTTCAGATAAGCACTAGGAAAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAGGGCATGAGTTCCACATGCTTTCAGATAAGCACTAGGAAAAAAT  500

seq1  CAAGAAGGTTAAATGCTCAGGGTTGTCTCTTCAACAAAAGACATGTATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGGTTAAATGCTCAGGGTTGTCTCTTCAACAAAAGACATGTATAA  550

seq1  CCTGTTTTCCTCCCAGAAGACTGGGAATGGACGTAGCTATAGCCTGGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTTTCCTCCCAGAAGACTGGGAATGGACGTAGCTATAGCCTGGTAA  600

seq1  CCTGTGCTGTCTGTAGGGCCAGGTCACACCTGACTCTCCCGGACTCTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGCTGTCTGTAGGGCCAGGTCACACCTGACTCTCCCGGACTCTTTG  650

seq1  TCCCAGACCCTTCCTCCCTAGTCTTTTATCTTAAGCACAGTTTCTCGGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGACCCTTCCTCCCTAGTCTTTTATCTTAAGCACAGTTTCTCGGTC  700

seq1  AGTAGAAGCCATCCTTGGGAAGCTGGTCCTGCCATTATAAGGTGCCACAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAAGCCATCCTTGGGAAGCTGGTCCTGCCATTATAAGGTGCCACAT  750

seq1  CCCATCGTCTAGATGCAGGGATACAGAATGCATCCTAAGGAATACTGAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATCGTCTAGATGCAGGGATACAGAATGCATCCTAAGGAATACTGAAC  800

seq1  CCAGTGGAGCCAGCCCAAGAGAAAGGCCACTTGCGCTTCAGGTCACAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGGAGCCAGCCCAAGAGAAAGGCCACTTGCGCTTCAGGTCACAGAG  850

seq1  CTACAGATGCAGCACTATCCAGATGCCACTTCCATGAACCCCCACAGCAC  900
      |||||||||||||||||| |||||||||||||||||||||||||||||| 
seq2  CTACAGATGCAGCACTAT-CAGATGCCACTTCCATGAACCCCCACAGCA-  898

seq1  CAGGGGGAGCCTGAGGGGTCTGAACACTTCCCTGTCCAAGTTAATGCAAC  950
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CAGGGGGAGCCTGAGGGGTCTGAACACTTCCCTGTCC-AGTTAATGCAAC  947

seq1  -TGTAGCAGAAAACTCATAAGTACCCTATTTCATATTTTGAATGTCAATC  999
       |||||||||||||||||||||| |||||||||||||||| || ||||||
seq2  TTGTAGCAGAAAACTCATAAGTA-CCTATTTCATATTTTG-ATTTCAATC  995

seq1  TCAAAAAAAAGGA---AGGAAGG-----------------------AAGG  1023
      ||||||||| |||    ||||||                       ||||
seq2  TCAAAAAAAGGGATGTTGGAAGGACGTATGGATTATTAATGTATGTAAGG  1045

seq1  AAG---GAAGGAA  1033
      |||   ||||| |
seq2  AAGGATGAAGGGA  1058

seq1: chr4_142770663_142771693
seq2: B6Ng01-053H20.g_69_1092 (reverse)

seq1  TTTAAGTGAGGGTCAAGCTTTCCCTTTTTTTGGCATAATGCCTATCTAGC  50
      |||||||||||||| ||||||||| || |||||||||    |||||||||
seq2  TTTAAGTGAGGGTC-AGCTTTCCC-TTATTTGGCATA--TACTATCTAGC  46

seq1  ATGATCCTTGCTCCCCCAGAAAGCAGTCTACTCTTTGCTACCTGACTCCT  100
      ||||||||||||||||||| |||||||||||||||||||| |||||||||
seq2  ATGATCCTTGCTCCCCCAGGAAGCAGTCTACTCTTTGCTA-CTGACTCCT  95

seq1  ACAACAAGAGTACTCACCAATCCGAGTCTTGTCGACCGCAGATGGTAAAA  150
      || |||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AC-ACAAGAGTACTCACCAATCCGAGTCTTGTCGA-CGCAGATGGTAAAA  143

seq1  GTCTTACTTCCTCTGGAAGTCCTCGAAGCACGTGTTCAGGTACCTCAGCC  200
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTACTT-CTCTGGAAGTCCTCGAAGCACGTGTTCAGGTACCTCAGCC  192

seq1  AGAGTCTCAGTGACTGCCACAGACTC-AGTGTTCTGCAAGGCAAACAGCA  249
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGAGTCTCAGTGACTGCCACAGACTCAAGTGTTCTGCAAGGCAAACAGCA  242

seq1  GAAGGGTCATAGCAAAAGGAAGAAAACCAGCAGTGTTTTTTATTTTGCTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGTCATAGCAAAAGGAAGAAAACCAGCAGTGTTTTTTATTTTGCTT  292

seq1  TGCATTGCTCTACTGAACCTGGAGTGCACAAAGCAGAAGGGGACAGGTCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATTGCTCTACTGAACCTGGAGTGCACAAAGCAGAAGGGGACAGGTCT  342

seq1  GGAGCTGCTGTATCACTTGCTGAGCCTAGTAGTGAAACACTAGCAACCTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGCTGTATCACTTGCTGAGCCTAGTAGTGAAACACTAGCAACCTT  392

seq1  CGAACCAGGGTCTGGTCTGTTCCAGCCACCTGTATCCACTTTCAAAATAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACCAGGGTCTGGTCTGTTCCAGCCACCTGTATCCACTTTCAAAATAT  442

seq1  GTAAGTCCCCAACACTGCACTGCTCTCTAACAGTGCTCCCACAGAACTGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTCCCCAACACTGCACTGCTCTCTAACAGTGCTCCCACAGAACTGG  492

seq1  GCAGCAGAACACAGCTTCCACCTGTTACTAAATCAAAGGCTACCAGCAAT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGAACACAGCTTCCACCTGTTACTAAATCAAAGGCTACCAGCAAT  542

seq1  ACACTACAACCCTAAAAGGATAATTTTGCCACACTCCATGAAGGCCATTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTACAACCCTAAAAGGATAATTTTGCCACACTCCATGAAGGCCATTT  592

seq1  GACCCATCAGATGCTGCCTCCCTCCTGTATCCCTCCAGCAACCTGAGTAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCATCAGATGCTGCCTCCCTCCTGTATCCCTCCAGCAACCTGAGTAG  642

seq1  GTTGGACATTCTATAGAGAGTGACAGCTCACTGTTAGCCCTCACTTCAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGACATTCTATAGAGAGTGACAGCTCACTGTTAGCCCTCACTTCAAG  692

seq1  TGGGACTTTCCAAGGAGCAATAGCTGACCGTTGTGTATCAGGCCACTGAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGACTTTCCAAGGAGCAATAGCTGACCGTTGTGTATCAGGCCACTGAA  742

seq1  CAGCAAAGATCACAATATCTCAGAGTTGACAGAAATACAGAATTATGCCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAAGATCACAATATCTCAGAGTTGACAGAAATACAGAATTATGCCT  792

seq1  CAAAACTTAGCTGGAATTCATCAGAGTCTTAAATAAGATTAGTATTAAAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTTAGCTGGAATTCATCAGAGTCTTAAATAAGATTAGTATTAAAT  842

seq1  GTTTATGTAAGGAATAAGGATACTGGTATCAACAAGGAAAACCAGGATGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATGTAAGGAATAAGGATACTGGTATCAACAAGGAAAACCAGGATGT  892

seq1  AGCTTTTAGAATCATTTCCAAATCAGACTGAAAACTAAAGACTAATTTTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTAGAATCATTTCCAAATCAGACTGAAAACTAAAGACTAATTTTC  942

seq1  TTACAGCAATGAAGCATTTTTAATTTTTGATTGTTTTTCAAGACAAGGGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGCAATGAAGCATTTTTAATTTTTGATTGTTTTTCAAGACAAGGGT  992

seq1  TTCTCCGTATAGCCCAGAGTATCCTGGAATTC  1031
      ||||||||||||||||||||||||||||||||
seq2  TTCTCCGTATAGCCCAGAGTATCCTGGAATTC  1024