BAC Information

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BAC

Clone NameB6Ng01-057E03
Chromosome4 (Build37)
Map Location 13,506,906 - 13,661,484
singlet/doubletdoublet
Overlap genenone
Upstream geneOTTMUSG00000004461, LOC100039988
Downstream geneRunx1t1, LOC625831, LOC433687, LOC100040030, LOC433688, Slc26a7, 1700034K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057E03.bB6Ng01-057E03.g
ACCDH879182DH879183
length1,064964
definitionDH879182|Mus musculus domesticus DNA, BAC clone: B6Ng01-057E03, 5' end.DH879183|Mus musculus domesticus DNA, BAC clone: B6Ng01-057E03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(13,660,413 - 13,661,484)(13,506,906 - 13,507,874)
sequence
gaattcactcaaactgtatctcactgccttgctgagctgacgccattgtg
ggtcaacacagtgaattctgcctctcgccgaatttcatgctatgtgctag
gctctattctaagcagtatttactaagttttaactagttccttccaaaac
agtcagtagttggagaggaactattgtatcccaggaaactgaagccaggt
ttagcttaactatcaatcttccctgtgtaaaatgagcaggaagcataatt
taaaccccagcggtatgggctagcactagtccaggtcagtctcagagtct
ctctagagtttaccctgcctctccagaaggattcattcgaatctctggat
gctgggcgagataaacaccaatgaaaatcatgtttctctcttcttaaaca
cttcggggtaaattgaagggcagacaagcttgaagcaactgatgtctgat
tctaagagaagcctccttggaatcaaatgacaaagaagcacaaccctcac
gtgaggcccaggtactctgtggggccaaggatcttagcatgaggagccaa
agaatctgcccgaacttggaaagagttggcaagatcctggcaaaagagtg
ctcaaggtgtttgtggccttctgtactacctaggtgacctcgctggctct
ccaccctgcctaatctgttctgagaatgcttaaaggccgagagttcctct
ttgtgtaggttaattaatattggttggatccaagatggctgccagagtga
tgcccagatgaccagcttcactccatttccctgctgagtgaaatgttttt
ccttcagggcattacagtgggccgctgctggagaacgttttccaggagcc
atgaaagaagcagaaaaatggtgtgcataaattcctcaaaatcccagcct
ttacagaaaagatctcttcttccttcttctccattttgggacctctacga
tgctcaaagagtgagaagttggcttggtgatctttatctctactcatcat
aatagaattccccttcacagcctcctttgtgggtcagtctcctgcagatc
atcctttgagggaa
gaattcaaactactccaatgtttccctaaaactctggtttgtttggaagc
aagcaggcatttatagactctcatccaacgggaaaaaaaaatctcaacac
tacataatttaaaggtctttttcttttactaaaactcaacttagctttta
aaaattattcttgtcctaattttcatgtaccacactgaaccatgaatcag
tttgagtacttttacaagagtctccctttcttctcatgtaactattctct
agcttcacaaaacaagttcatactcccttgagcaaattaagacaaagata
gagaagataattaaacatcaacaaaaattgttcaccattgcatttctact
ttcattttatgtggtatttagagtttagttttatttcattgtatttttaa
atgagatcaagaagagtggtggataaccactcactgcctgggaaacatta
taaagatagttctagataagtgtatggctctgtctgagggcgtgagatct
aaccagtgacaacaaggagatgagcttgttgctggatccttctatcagta
actggaattgttttctcatctacaaaatgagttatgttgatggtcactaa
gcctcctggactgtctgtataaatatacactagagacatttttaaaaaat
agaccatcacttgagttgcaaattgatctgcaataatcacgggtaactag
gccattttgtcaacaagaggtgttggcagaaatttgcagaatgttaaagt
acactgtgaaagtgctgagagtttcctgtaatcaaaattaattgttattt
attaaaaatagaggcaaaagatgggtggtagtgatggtacatacctttaa
tcttggcattggtgaggcagaggcaagcctggaactcaaagattaaaagc
cagccgtcacagagtgagttcaggacagtcagacttacggagaactctgg
tcttgaaaaaaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_13660413_13661484
seq2: B6Ng01-057E03.b_48_1111 (reverse)

seq1  TTCCCTCAAAGGATTGAACTGACAGGAGACTGA-CCACCAAGTGAGCTGT  49
      ||||||||||||| ||| ||| ||||||||||| |||| |||   |||||
seq2  TTCCCTCAAAGGA-TGATCTG-CAGGAGACTGACCCACAAAGGAGGCTGT  48

seq1  GAAGGGGAATTCTATTATTGTATGGAAGTCAGAGAT-AAGATCA-CAAGC  97
      ||||||||||||||||||   |||  ||| |||||| ||||||| |||||
seq2  GAAGGGGAATTCTATTAT--GATG--AGT-AGAGATAAAGATCACCAAGC  93

seq1  CAACTTCTCACTCTTTGAGCATCGTGAGGGTCCCAAAATGGGGAAGAAGG  147
      |||||||||||||||||||||||||   ||||||||||||| ||||||||
seq2  CAACTTCTCACTCTTTGAGCATCGTAGAGGTCCCAAAATGGAGAAGAAGG  143

seq1  AAGAAGAGGATCTTTTCTGTAAAGGCTGGGATTTTTGAGGAATTTATGCA  197
      ||||||| ||||||||||||||||||||||| ||||||||||||||||||
seq2  AAGAAGA-GATCTTTTCTGTAAAGGCTGGGA-TTTTGAGGAATTTATGCA  191

seq1  CACCATTTTTTCTGCTTCTTTCATGGCTCCTGGAAAACGTTCTCCAGCAG  247
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCA-TTTTTCTGCTTCTTTCATGGCTCCTGGAAAACGTTCTCCAGCAG  240

seq1  CGGCCCACTGTAATGCCCTGAAGGAAAAACATTTTCACTCAGCAGGGAAA  297
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CGGCCCACTGTAATGCCCTGAAGGAAAAACA-TTTCACTCAGCAGGGAAA  289

seq1  TGGAGTGAAGCTGGTCATCTGGGCATCACTCTGGCAGCCATCTTGGATCC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTGAAGCTGGTCATCTGGGCATCACTCTGGCAGCCATCTTGGATCC  339

seq1  AACCAATATTAATTAACCTACACAAAGAGGAACTCTCGGCCTTTAAGCAT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAATATTAATTAACCTACACAAAGAGGAACTCTCGGCCTTTAAGCAT  389

seq1  TCTCAGAACAGATTAGGCAGGGTGGAGAGCCAGCGAGGTCACCTAGGTAG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAACAGATTAGGCAGGGTGGAGAGCCAGCGAGGTCACCTAGGTAG  439

seq1  TACAGAAGGCCACAAACACCTTGAGCACTCTTTTGCCAGGATCTTGCCAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAAGGCCACAAACACCTTGAGCACTCTTTTGCCAGGATCTTGCCAA  489

seq1  CTCTTTCCAAGTTCGGGCAGATTCTTTGGCTCCTCATGCTAAGATCCTTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCCAAGTTCGGGCAGATTCTTTGGCTCCTCATGCTAAGATCCTTG  539

seq1  GCCCCACAGAGTACCTGGGCCTCACGTGAGGGTTGTGCTTCTTTGTCATT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCACAGAGTACCTGGGCCTCACGTGAGGGTTGTGCTTCTTTGTCATT  589

seq1  TGATTCCAAGGAGGCTTCTCTTAGAATCAGACATCAGTTGCTTCAAGCTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCCAAGGAGGCTTCTCTTAGAATCAGACATCAGTTGCTTCAAGCTT  639

seq1  GTCTGCCCTTCAATTTACCCCGAAGTGTTTAAGAAGAGAGAAACATGATT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCCCTTCAATTTACCCCGAAGTGTTTAAGAAGAGAGAAACATGATT  689

seq1  TTCATTGGTGTTTATCTCGCCCAGCATCCAGAGATTCGAATGAATCCTTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTGGTGTTTATCTCGCCCAGCATCCAGAGATTCGAATGAATCCTTC  739

seq1  TGGAGAGGCAGGGTAAACTCTAGAGAGACTCTGAGACTGACCTGGACTAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAGGCAGGGTAAACTCTAGAGAGACTCTGAGACTGACCTGGACTAG  789

seq1  TGCTAGCCCATACCGCTGGGGTTTAAATTATGCTTCCTGCTCATTTTACA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGCCCATACCGCTGGGGTTTAAATTATGCTTCCTGCTCATTTTACA  839

seq1  CAGGGAAGATTGATAGTTAAGCTAAACCTGGCTTCAGTTTCCTGGGATAC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAAGATTGATAGTTAAGCTAAACCTGGCTTCAGTTTCCTGGGATAC  889

seq1  AATAGTTCCTCTCCAACTACTGACTGTTTTGGAAGGAACTAGTTAAAACT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTTCCTCTCCAACTACTGACTGTTTTGGAAGGAACTAGTTAAAACT  939

seq1  TAGTAAATACTGCTTAGAATAGAGCCTAGCACATAGCATGAAATTCGGCG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAATACTGCTTAGAATAGAGCCTAGCACATAGCATGAAATTCGGCG  989

seq1  AGAGGCAGAATTCACTGTGTTGACCCACAATGGCGTCAGCTCAGCAAGGC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGCAGAATTCACTGTGTTGACCCACAATGGCGTCAGCTCAGCAAGGC  1039

seq1  AGTGAGATACAGTTTGAGTGAATTC  1072
      |||||||||||||||||||||||||
seq2  AGTGAGATACAGTTTGAGTGAATTC  1064

seq1: chr4_13506906_13507874
seq2: B6Ng01-057E03.g_69_1030

seq1  GAATTCAAACTACTCCAATGTTTCCCTAAAACTCTGGTTTGTTTGGAAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACTACTCCAATGTTTCCCTAAAACTCTGGTTTGTTTGGAAGC  50

seq1  AAGCAGGCATTTATAGACTCTCATCCAACGGGAAAAAAAAATCTCAACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGCATTTATAGACTCTCATCCAACGGGAAAAAAAAATCTCAACAC  100

seq1  TACATAATTTAAAGGTCTTTTTCTTTTACTAAAACTCAACTTAGCTTTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAATTTAAAGGTCTTTTTCTTTTACTAAAACTCAACTTAGCTTTTA  150

seq1  AAAATTATTCTTGTCCTAATTTTCATGTACCACACTGAACCATGAATCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATTCTTGTCCTAATTTTCATGTACCACACTGAACCATGAATCAG  200

seq1  TTTGAGTACTTTTACAAGAGTCTCCCTTTCTTCTCATGTAACTATTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGTACTTTTACAAGAGTCTCCCTTTCTTCTCATGTAACTATTCTCT  250

seq1  AGCTTCACAAAACAAGTTCATACTCCCTTGAGCAAATTAAGACAAAGATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTCACAAAACAAGTTCATACTCCCTTGAGCAAATTAAGACAAAGATA  300

seq1  GAGAAGATAATTAAACATCAACAAAAATTGTTCACCATTGCATTTCTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGATAATTAAACATCAACAAAAATTGTTCACCATTGCATTTCTACT  350

seq1  TTCATTTTATGTGGTATTTAGAGTTTAGTTTTATTTCATTGTATTTTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTATGTGGTATTTAGAGTTTAGTTTTATTTCATTGTATTTTTAA  400

seq1  ATGAGATCAAGAAGAGTGGTGGATAACCACTCACTGCCTGGGAAACATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGATCAAGAAGAGTGGTGGATAACCACTCACTGCCTGGGAAACATTA  450

seq1  TAAAGATAGTTCTAGATAAGTGTATGGCTCTGTCTGAGGGCGTGAGATCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATAGTTCTAGATAAGTGTATGGCTCTGTCTGAGGGCGTGAGATCT  500

seq1  AACCAGTGACAACAAGGAGATGAGCTTGTTGCTGGATCCTTCTATCAGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGTGACAACAAGGAGATGAGCTTGTTGCTGGATCCTTCTATCAGTA  550

seq1  ACTGGAATTGTTTTCTCATCTACAAAATGAGTTATGTTGATGGTCACTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAATTGTTTTCTCATCTACAAAATGAGTTATGTTGATGGTCACTAA  600

seq1  GCCTCCTGGACTGTCTGTATAAATATACACTAGAGACATTTTTAAAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCTGGACTGTCTGTATAAATATACACTAGAGACATTTTTAAAAAAT  650

seq1  AGACCATCACTTGAGTTGCAAATTGATCTGCAATAATCACGGGTAACTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCATCACTTGAGTTGCAAATTGATCTGCAATAATCACGGGTAACTAG  700

seq1  GCCATTTTGTCAACAAGAGGTGTTGGCAGAAATTTGCAGAATGTTAAAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATTTTGTCAACAAGAGGTGTTGGCAGAAATTTGCAGAATGTTAAAGT  750

seq1  ACACTGTGAAAGTGCTGAGAGTTTCCTGTAATCAAAATTAATTGTTATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTGAAAGTGCTGAGAGTTTCCTGTAATCAAAATTAATTGTTATTT  800

seq1  ATTAAAAATAGAGGCAAAAAGATGGGTGGTAGTGATGGTACATACCTTTA  850
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  ATTAAAAATAGAGGC-AAAAGATGGGTGGTAGTGATGGTACATACCTTTA  849

seq1  ATCTTGGCATTGGTGAGGCAGAGGCAGGCCTTGAACTCAAAGAATTAAAG  900
      |||||||||||||||||||||||||| |||| |||||||||| |||||| 
seq2  ATCTTGGCATTGGTGAGGCAGAGGCAAGCCTGGAACTCAAAG-ATTAAAA  898

seq1  GCCAGCCGGTCTACAGAGTGAGTTCCAGGACAGCCAGAACTACACAGAGA  950
      ||||||| ||| |||||||||||| |||||||| ||||  |  || ||||
seq2  GCCAGCC-GTC-ACAGAGTGAGTT-CAGGACAGTCAGACTT--ACGGAGA  943

seq1  AACCCTGTCTTGAAAAAAA  969
      |  |  |||||||||||||
seq2  ACTCTGGTCTTGAAAAAAA  962