BAC Information

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BAC

Clone NameB6Ng01-057I16
Chromosome4 (Build37)
Map Location 84,023,946 - 84,104,922
singlet/doubletdoublet
Overlap geneBnc2
Upstream geneSnapc3, Psip1, LOC100040611, 4930473A06Rik, LOC668010
Downstream geneLOC100040660, LOC624465, LOC100040284, D530005L17Rik, LOC622811, LOC100040303, Sh3gl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-057I16.bB6Ng01-057I16.g
ACCDH879383DH879384
length781700
definitionDH879383|Mus musculus domesticus DNA, BAC clone: B6Ng01-057I16, 5' end.DH879384|Mus musculus domesticus DNA, BAC clone: B6Ng01-057I16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,104,142 - 84,104,922)(84,023,946 - 84,024,645)
sequence
gaattcactaagaatgaatttaaatcccaagggtcaaagttgcacttcat
gtggcaattcttagctgcataaaaacaaacaaaaaatatccatagaactg
tggtataaacaaaaaaagaagatgtagtgttgttatgacttttggattag
attactgctgaaccaagcgtctttttgacacaagctaaaaataacgtgtt
tggctaattaggcgataaaagcaaacatcaaaggcagacctttccgttag
tcctacactggcttccttgtatttaaaacgctagccaacaaataaagtgt
ttgaccgttgttattattcgtttttagttgagacttagtggaaaacaata
tccctaggtatttgtttttctcagcttgatacttaaccctactaccaatc
actaagtaatagtgaaatgtaacagctactgccttgtcacaacagacact
taaaaacgatttctgctttttccacattaacacgtctagattaggaaagt
ggagcatatctctccctttcagtgatatttattcatgggaatgatggtgt
gcagcaagaaaaagtgcgtgcatgtaaaaataccttcagcttgccaggga
ggttgctttatttttttttttttccagaatgctcttgatttacaagtgaa
acttactcttgtgtgaagggcaaatttaaatagtaggaattcatgcggtc
actagtgagacatcagttgaaaagtctgggtgttgttttctctgtgtggt
ttcaggtgtgtgtgtgtgtgtgtgtgtgtgt
gaattctcactgaaaagggaactttacaataacagtaggttagcttgacc
aatcacttataagctaaataagagacaggaaatgaatccttgcctgttaa
cttgtataatttaataaataggtggagattttcataccagacagcaaaat
ctaattaaatcaaaagaaaataaatatcataattcaaaaagtagtggcag
aaagctatgtttgtttgaccaagggatctgaagaaggcttaattcggggt
ttagggtttgtctttgttgtttgtttgtctgtttttgatactaacctctc
aagcaagttggaaatatgtccgaggactccatttacatattcttggctaa
tgtccttcctagctatagatctggcttatgtagccattacaaaacgcggc
tactgattcttcttctctggtggaagtgagcctctgccactgacagctaa
gccaggaacatgctacccggttagacagtcaccacttaagtaagaatctg
ccaaatgaacccattttcttcaggtttacaaataatgaggacaagtagaa
aagaaaaacaaaaaaccataaaggtaatttttaaaagtgggggggaggga
gaagaaatttttaaaaatatactctaaataaaaagcatattaagttatat
attttaagttagcaatgagcatcagatcattaactttatttctaatttgc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_84104142_84104922
seq2: B6Ng01-057I16.b_49_829 (reverse)

seq1  ACACACACACACACACACACACACACCTGAAACCACACAGAGAAAACAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACCTGAAACCACACAGAGAAAACAAC  50

seq1  ACCCAGACTTTTCAACTGATGTCTCACTAGTGACCGCATGAATTCCTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGACTTTTCAACTGATGTCTCACTAGTGACCGCATGAATTCCTACT  100

seq1  ATTTAAATTTGCCCTTCACACAAGAGTAAGTTTCACTTGTAAATCAAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAATTTGCCCTTCACACAAGAGTAAGTTTCACTTGTAAATCAAGAG  150

seq1  CATTCTGGAAAAAAAAAAAAATAAAGCAACCTCCCTGGCAAGCTGAAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTGGAAAAAAAAAAAAATAAAGCAACCTCCCTGGCAAGCTGAAGGT  200

seq1  ATTTTTACATGCACGCACTTTTTCTTGCTGCACACCATCATTCCCATGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTACATGCACGCACTTTTTCTTGCTGCACACCATCATTCCCATGAA  250

seq1  TAAATATCACTGAAAGGGAGAGATATGCTCCACTTTCCTAATCTAGACGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATCACTGAAAGGGAGAGATATGCTCCACTTTCCTAATCTAGACGT  300

seq1  GTTAATGTGGAAAAAGCAGAAATCGTTTTTAAGTGTCTGTTGTGACAAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATGTGGAAAAAGCAGAAATCGTTTTTAAGTGTCTGTTGTGACAAGG  350

seq1  CAGTAGCTGTTACATTTCACTATTACTTAGTGATTGGTAGTAGGGTTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGCTGTTACATTTCACTATTACTTAGTGATTGGTAGTAGGGTTAAG  400

seq1  TATCAAGCTGAGAAAAACAAATACCTAGGGATATTGTTTTCCACTAAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAAGCTGAGAAAAACAAATACCTAGGGATATTGTTTTCCACTAAGTC  450

seq1  TCAACTAAAAACGAATAATAACAACGGTCAAACACTTTATTTGTTGGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTAAAAACGAATAATAACAACGGTCAAACACTTTATTTGTTGGCTA  500

seq1  GCGTTTTAAATACAAGGAAGCCAGTGTAGGACTAACGGAAAGGTCTGCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTTTAAATACAAGGAAGCCAGTGTAGGACTAACGGAAAGGTCTGCCT  550

seq1  TTGATGTTTGCTTTTATCGCCTAATTAGCCAAACACGTTATTTTTAGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTTTGCTTTTATCGCCTAATTAGCCAAACACGTTATTTTTAGCTT  600

seq1  GTGTCAAAAAGACGCTTGGTTCAGCAGTAATCTAATCCAAAAGTCATAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAAAAAGACGCTTGGTTCAGCAGTAATCTAATCCAAAAGTCATAAC  650

seq1  AACACTACATCTTCTTTTTTTGTTTATACCACAGTTCTATGGATATTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTACATCTTCTTTTTTTGTTTATACCACAGTTCTATGGATATTTTT  700

seq1  TGTTTGTTTTTATGCAGCTAAGAATTGCCACATGAAGTGCAACTTTGACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTTTATGCAGCTAAGAATTGCCACATGAAGTGCAACTTTGACC  750

seq1  CTTGGGATTTAAATTCATTCTTAGTGAATTC  781
      |||||||||||||||||||||||||||||||
seq2  CTTGGGATTTAAATTCATTCTTAGTGAATTC  781

seq1: chr4_84023946_84024645
seq2: B6Ng01-057I16.g_67_766

seq1  GAATTCTCACTGAAAAGGGAACTTTACAATAACAGTAGGTTAGCTTGACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACTGAAAAGGGAACTTTACAATAACAGTAGGTTAGCTTGACC  50

seq1  AATCACTTATAAGCTAAATAAGAGACAGGAAATGAATCCTTGCCTGTTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACTTATAAGCTAAATAAGAGACAGGAAATGAATCCTTGCCTGTTAA  100

seq1  CTTGTATAATTTAATAAATAGGTGGAGATTTTCATACCAGACAGCAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTATAATTTAATAAATAGGTGGAGATTTTCATACCAGACAGCAAAAT  150

seq1  CTAATTAAATCAAAAGAAAATAAATATCATAATTCAAAAAGTAGTGGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTAAATCAAAAGAAAATAAATATCATAATTCAAAAAGTAGTGGCAG  200

seq1  AAAGCTATGTTTGTTTGACCAAGGGATCTGAAGAAGGCTTAATTCGGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTATGTTTGTTTGACCAAGGGATCTGAAGAAGGCTTAATTCGGGGT  250

seq1  TTAGGGTTTGTCTTTGTTGTTTGTTTGTCTGTTTTTGATACTAACCTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGTTTGTCTTTGTTGTTTGTTTGTCTGTTTTTGATACTAACCTCTC  300

seq1  AAGCAAGTTGGAAATATGTCCGAGGACTCCATTTACATATTCTTGGCTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAGTTGGAAATATGTCCGAGGACTCCATTTACATATTCTTGGCTAA  350

seq1  TGTCCTTCCTAGCTATAGATCTGGCTTATGTAGCCATTACAAAACGCGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTCCTAGCTATAGATCTGGCTTATGTAGCCATTACAAAACGCGGC  400

seq1  TACTGATTCTTCTTCTCTGGTGGAAGTGAGCCTCTGCCACTGACAGCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGATTCTTCTTCTCTGGTGGAAGTGAGCCTCTGCCACTGACAGCTAA  450

seq1  GCCAGGAACATGCTACCCGGTTAGACAGTCACCACTTAAGTAAGAATCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGAACATGCTACCCGGTTAGACAGTCACCACTTAAGTAAGAATCTG  500

seq1  CCAAATGAACCCATTTTCTTCAGGTTTACAAATAATGAGGACAAGTAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATGAACCCATTTTCTTCAGGTTTACAAATAATGAGGACAAGTAGAA  550

seq1  AAGAAAAACAAAAAACCATAAAGGTAATTTTTAAAAGTGGGGGGGAGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAACAAAAAACCATAAAGGTAATTTTTAAAAGTGGGGGGGAGGGA  600

seq1  GAAGAAATTTTTAAAAATATACTCTAAATAAAAAGCATATTAAGTTATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAATTTTTAAAAATATACTCTAAATAAAAAGCATATTAAGTTATAT  650

seq1  ATTTTAAGTTAGCAATGAGCATCAGATCATTAACTTTATTTCTAATTTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAGTTAGCAATGAGCATCAGATCATTAACTTTATTTCTAATTTGC  700