BAC Information

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BAC

Clone NameB6Ng01-058C09
Chromosome4 (Build37)
Map Location 45,292,706 - 45,369,564
singlet/doubletdoublet
Overlap geneFrmpd1, Rg9mtd3, Exosc3, LOC666325, Wdr32
Upstream geneMelk, Pax5, 5730488B01Rik, LOC545618, Zcchc7, D4Wsu132e, Grhpr, Zbtb5, 1700055D18Rik, Polr1e, Fbxo10, 1110019J04Rik
Downstream geneMcart1, Shb, LOC100040140, LOC100040557, Gm829, LOC100040567, LOC100040580, Aldh1b1, Igfbpl1, 1300002K09Rik, Tdrd7, Tmod1, BC057893, AU014645, Xpa, LOC624430, LOC666379, LOC666389, Foxe1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058C09.bB6Ng01-058C09.g
ACCDH879805DH879806
length9641,025
definitionDH879805|Mus musculus domesticus DNA, BAC clone: B6Ng01-058C09, 5' end.DH879806|Mus musculus domesticus DNA, BAC clone: B6Ng01-058C09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,368,593 - 45,369,564)(45,292,706 - 45,293,743)
sequence
gaattcttttagaacctacatttcactgtccaagtcaaaacagtgttgta
taattttaaagattcaaactaaaaaaccacaaaaagaattttttctccat
ttatttagctttatgcaaattctcagaatggattgaatctttttgttgtt
gttgttgtttttggtataatttttgcaatgaaattataatcgaatatgca
atatgatatcctcactttcttttgagttttgtactgtaataaaatcactt
ttccataaatcctcaactttcatcaactgtctcacaagagcaagttaaga
tattcacagaattctaagtgtctcctgtatcgttatttctatcaccttgt
ttttctgaggttttctctctcagatcctctattgccaatgatttatatgt
gtcttgaccaattctccaaaatcaccttcagggttttgtggaattacaca
tgaaaaaaaaatgtgtgtgtgtgtgtgtgtatgtgctagttatgaggaaa
tactatataaatgtaaaatacaaatacacacacacacatatacaaataca
tatatatatatatatatatatatatatatatatatatacacacacacaca
aaatgcaaatatatacagtattccccataactggcatatgctggatttgt
cttatattgtattaagtatacaagagacatgcggaggaagaagcagactt
aggcttatgtaggtactacactggcttttgtcacatcaccaagtgaatac
tcttacagttaccttggggctttctctttacaaccttataactataggga
cctggactgttacacggattcttatacctaaatataaagttctcatgata
agagtaagcctagggctggagagatgtggctctgtcgttaaagaattagc
tgctcttcagaggaccaggtcatttccagcactcacatgacagcctacac
tgtcttctgctcca
gaattcattctgctgtggcaatcagaaggcttcccagcagaggtgtcaaa
tgggctgggccttgtcaggtggacaggactcacaagaaaggaatggagtg
cccagtagaaagaatagctgcaccaccatgggtcctgggatgaaattggt
tgttggagcaatgagacaggccatcagtggtgtttgttggacttaggaag
tccaagggtccctgacctcagaaggttggggatctgctgtctgggtccct
catatgtttcccaactaagattgtgaggtttttaatctataattcatgat
cccaaacagacaccaatgtaaagtcttttcacacagaaatatttcctgag
ataaccagaaaaccttgcaagacacatacatgtacaaaaggtttccactc
tctgaggttaaaaaccctggacagcagtacagacacggcggtctgagtct
cagccctctcctgtgcctctctgatactgccctcttgtggttctcattgc
tgttggcagaaaagccagttcagctcctgagggcaccttctctgtgtgat
gccctctgcctgtttgcctccgttcctgctctctgcccctttccctcatc
tcagctggcctttgcacctgtttttctgtctgccctggtcttcacctggt
tgcccatcactgtccagcctcagccgagggttcccatctgcagagaacat
ttttcacgtttaccagaccagggccagctgtgcatctcagtcatgggttc
tgccagcagtggtggctttctgcctgtacctcggtactgcctgcagttac
atattcacctgcatgattgtgagagggctccttgtgtgcagggaaagtgt
ccccacagcacctgggcatcatcactaaatgaatgagtgaactcaccact
tgattatgggtttgttgtgttgttgtccttggggactggccttgttttcc
ttgctgtctcacaatgtgatctggctgtctggacttcttgtgaaacctgg
gatcaaacacatgggaggaggaaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_45368593_45369564
seq2: B6Ng01-058C09.b_47_1010 (reverse)

seq1  TGGAGCTAGAGACAGTTGTGAGCTGTCATGTGAGTGCTGGAAATTGAACC  50
      ||||||   |||||| |||  |||||||||||||||||||||||   |||
seq2  TGGAGCAGAAGACAG-TGTAGGCTGTCATGTGAGTGCTGGAAAT--GACC  47

seq1  TGGGTCCTCTGGAAGAGCAGCCAATTCTCTTAACGACAGAGCCACATCTC  100
      | |||||||| |||||||||| |||||| |||||||||||||||||||||
seq2  T-GGTCCTCT-GAAGAGCAGCTAATTCT-TTAACGACAGAGCCACATCTC  94

seq1  TCCAGCCCCTAGGCTTACTTCTTATTCATGAGAACTTTATATTTAGGTAT  150
      ||||| |||||||||||| ||||| |||||||||||||||||||||||||
seq2  TCCAG-CCCTAGGCTTAC-TCTTA-TCATGAGAACTTTATATTTAGGTAT  141

seq1  AAGAATCCGTGTAACAGTCCAGGTCCCTATAGTTATAAGGTTGTAAAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCCGTGTAACAGTCCAGGTCCCTATAGTTATAAGGTTGTAAAGAG  191

seq1  AAAGCCCCAAGGTAACTGTAAGAGTATTCACTTGGTGATGTGAC-AAAGC  249
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AAAGCCCCAAGGTAACTGTAAGAGTATTCACTTGGTGATGTGACAAAAGC  241

seq1  CAGTGTAGTACCTACATAAGCCTAAGTCTGCTTCTTCCTCCGCATGTCTC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTAGTACCTACATAAGCCTAAGTCTGCTTCTTCCTCCGCATGTCTC  291

seq1  TTGTATACTTAATACAATATAAGACAAATCCAGCATATGCCAGTTATGGG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATACTTAATACAATATAAGACAAATCCAGCATATGCCAGTTATGGG  341

seq1  GAATACTGTATATATTTGCATTTTGTGTGTGTGTGTATATATATATATAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACTGTATATATTTGCATTTTGTGTGTGTGTGTATATATATATATAT  391

seq1  ATATATATATATATATATATATATGTATTTGTATATGTGTGTGTGTGTAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATGTATTTGTATATGTGTGTGTGTGTAT  441

seq1  TTGTATTTTACATTTATATAGTATTTCCTCATAACTAGCACATACACACA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATTTTACATTTATATAGTATTTCCTCATAACTAGCACATACACACA  491

seq1  CACACACACACATTTTTTTTTCATGTGTAATTCCACAAAACCCTGAAGGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACATTTTTTTTTCATGTGTAATTCCACAAAACCCTGAAGGT  541

seq1  GATTTTGGAGAATTGGTCAAGACACATATAAATCATTGGCAATAGAGGAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGGAGAATTGGTCAAGACACATATAAATCATTGGCAATAGAGGAT  591

seq1  CTGAGAGAGAAAACCTCAGAAAAACAAGGTGATAGAAATAACGATACAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGAGAAAACCTCAGAAAAACAAGGTGATAGAAATAACGATACAGG  641

seq1  AGACACTTAGAATTCTGTGAATATCTTAACTTGCTCTTGTGAGACAGTTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACTTAGAATTCTGTGAATATCTTAACTTGCTCTTGTGAGACAGTTG  691

seq1  ATGAAAGTTGAGGATTTATGGAAAAGTGATTTTATTACAGTACAAAACTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGTTGAGGATTTATGGAAAAGTGATTTTATTACAGTACAAAACTC  741

seq1  AAAAGAAAGTGAGGATATCATATTGCATATTCGATTATAATTTCATTGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAAGTGAGGATATCATATTGCATATTCGATTATAATTTCATTGCA  791

seq1  AAAATTATACCAAAAACAACAACAACAACAAAAAGATTCAATCCATTCTG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATACCAAAAACAACAACAACAACAAAAAGATTCAATCCATTCTG  841

seq1  AGAATTTGCATAAAGCTAAATAAATGGAGAAAAAATTCTTTTTGTGGTTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTGCATAAAGCTAAATAAATGGAGAAAAAATTCTTTTTGTGGTTT  891

seq1  TTTAGTTTGAATCTTTAAAATTATACAACACTGTTTTGACTTGGACAGTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTTGAATCTTTAAAATTATACAACACTGTTTTGACTTGGACAGTG  941

seq1  AAATGTAGGTTCTAAAAGAATTC  972
      |||||||||||||||||||||||
seq2  AAATGTAGGTTCTAAAAGAATTC  964

seq1: chr4_45292706_45293743
seq2: B6Ng01-058C09.g_68_1092

seq1  GAATTCATTCTGCTGTGGCAATCAGAAGGCTTCCCAGCAGAGGTGTCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTCTGCTGTGGCAATCAGAAGGCTTCCCAGCAGAGGTGTCAAA  50

seq1  TGGGCTGGGCCTTGTCAGGTGGACAGGACTCACAAGAAAGGAATGGAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTGGGCCTTGTCAGGTGGACAGGACTCACAAGAAAGGAATGGAGTG  100

seq1  CCCAGTAGAAAGAATAGCTGCACCACCATGGGTCCTGGGATGAAATTGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTAGAAAGAATAGCTGCACCACCATGGGTCCTGGGATGAAATTGGT  150

seq1  TGTTGGAGCAATGAGACAGGCCATCAGTGGTGTTTGTTGGACTTAGGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGAGCAATGAGACAGGCCATCAGTGGTGTTTGTTGGACTTAGGAAG  200

seq1  TCCAAGGGTCCCTGACCTCAGAAGGTTGGGGATCTGCTGTCTGGGTCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGGGTCCCTGACCTCAGAAGGTTGGGGATCTGCTGTCTGGGTCCCT  250

seq1  CATATGTTTCCCAACTAAGATTGTGAGGTTTTTAATCTATAATTCATGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTTTCCCAACTAAGATTGTGAGGTTTTTAATCTATAATTCATGAT  300

seq1  CCCAAACAGACACCAATGTAAAGTCTTTTCACACAGAAATATTTCCTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAACAGACACCAATGTAAAGTCTTTTCACACAGAAATATTTCCTGAG  350

seq1  ATAACCAGAAAACCTTGCAAGACACATACATGTACAAAAGGTTTCCACTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCAGAAAACCTTGCAAGACACATACATGTACAAAAGGTTTCCACTC  400

seq1  TCTGAGGTTAAAAACCCTGGACAGCAGTACAGACACGGCGGTCTGAGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGTTAAAAACCCTGGACAGCAGTACAGACACGGCGGTCTGAGTCT  450

seq1  CAGCCCTCTCCTGTGCCTCTCTGATACTGCCCTCTTGTGGTTCTCATTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTCTCCTGTGCCTCTCTGATACTGCCCTCTTGTGGTTCTCATTGC  500

seq1  TGTTGGCAGAAAAGCCAGTTCAGCTCCTGAGGGCACCTTCTCTGTGTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGCAGAAAAGCCAGTTCAGCTCCTGAGGGCACCTTCTCTGTGTGAT  550

seq1  GCCCTCTGCCTGTTTGCCTCCGTTCCTGCTCTCTGCCCCTTTCCCTCATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTGCCTGTTTGCCTCCGTTCCTGCTCTCTGCCCCTTTCCCTCATC  600

seq1  TCAGCTGGCCTTTGCACCTGTTTTTCTGTCTGCCCTGGTCTTCACCTGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGGCCTTTGCACCTGTTTTTCTGTCTGCCCTGGTCTTCACCTGGT  650

seq1  TGCCCATCACTGTCCAGCCTCAGCCGAGGGTTCCCATCTGCAGAGAACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCATCACTGTCCAGCCTCAGCCGAGGGTTCCCATCTGCAGAGAACAT  700

seq1  TTTTCAGGTTTACCAGACCAGGGCCAGCTGTGCATCTCAGTCATGGGTTC  750
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACGTTTACCAGACCAGGGCCAGCTGTGCATCTCAGTCATGGGTTC  750

seq1  TGCCAGCAGTGGTGGCTTTCTGCCTGTACCTCGGTACTGCCTGCAGTTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAGCAGTGGTGGCTTTCTGCCTGTACCTCGGTACTGCCTGCAGTTAC  800

seq1  ATATTCACCTGCATGATTGTGAGAGGGCTCCTTGTGTGCAGGGAAGGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  ATATTCACCTGCATGATTGTGAGAGGGCTCCTTGTGTGCAGGGAAAGTGT  850

seq1  CCCCACAGCACCTGGGCATCATCACTAAATGAATGAGTGAACTCACCACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACAGCACCTGGGCATCATCACTAAATGAATGAGTGAACTCACCACT  900

seq1  TGATTATGGGTTTGTTGTTGTTGTTGTTCCTTGGGGACTGGCCTTTGTTT  950
      ||||||||||||||||| |||||||| |||||||||||||||| ||||||
seq2  TGATTATGGGTTTGTTG-TGTTGTTG-TCCTTGGGGACTGGCC-TTGTTT  947

seq1  TCCCTTTGCTGTCTCACCATGTGATCTTGGCTGTCCTGGAACTTTCTGTG  1000
      |||  |||||||||||| |||||||| ||||||| |||| ||||  ||||
seq2  TCC--TTGCTGTCTCACAATGTGATC-TGGCTGT-CTGG-ACTTCTTGTG  992

seq1  TAGACCTTGGGATCAGACCAGCAATGGGAGGAGGAACA  1038
       | ||| |||||||| ||     |||||||||||||||
seq2  -AAACC-TGGGATCAAAC---ACATGGGAGGAGGAACA  1025