BAC Information

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BAC

Clone NameB6Ng01-058J12
Chromosome4 (Build37)
Map Location 19,432,082 - 19,581,170
singlet/doubletdoublet
Overlap geneCngb3, Cpne3, LOC100040306, 2410005O16Rik, Wwp1
Upstream geneLOC667251, LOC435772, LOC623122
Downstream geneSlc7a13, Atp6v0d2, LOC667282, Ttpa, LOC667301, EG664800, E130310K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058J12.bB6Ng01-058J12.g
ACCDH880129DH880130
length1,2011,072
definitionDH880129|Mus musculus domesticus DNA, BAC clone: B6Ng01-058J12, 5' end.DH880130|Mus musculus domesticus DNA, BAC clone: B6Ng01-058J12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,579,943 - 19,581,170)(19,432,082 - 19,433,173)
sequence
gaattcaaatatattagtatttctaccttttttctaatttatttgaaagg
attgttacctgaaaatcttagtggataaataaagataatgtttataaaga
caaatcaaactggaggcaggtatgacatgcctggagacctagctacttgg
ataaggacaactaggaggatttcctcagtctagaacttaagggtctgaac
tgagctgaggtagatactataaaattctcatatatgtgttcctcctactg
tatttagagctttccagtggcatggggtacttgttacagccagcaaacca
ttatgagtaaattgttgtgaccaaaatgttcacacacacacacacacaca
cacacacacacacacatatatcaaactaatttaataatgaagagtgacaa
tgagttgtcacatatataaccagaaactatagaacagtatcactttgaaa
gcagtatcagatagaaacactgtacagaaatgtacaatttaattaaattt
catttcttgtggcatactagttatgtgggttctgagaagtgcatattgtc
atttcaatgctgtactagagtctcttgaattgtaagcaattaggaataaa
gattcaattcacattttgttcaggctttcagtgtggtcataagttttgaa
ctcgtttgggttgagacgagatcagtagaatgtatgatggtttgatagaa
agcagcccagtcattttctgtcttagctctgctgtgcatttctaccaaga
aggaatgacaattgttcttcattggtacaagcatttctgtttaagcagtt
acgttttctaaccttttcacctaaaggcatttttatctatacctaagtaa
ttttatttctataaaaccttagtatttaccatgttggtccatgcctataa
tcccaaacgcttggtgggattgcaattcccagatctgcctgagtaaagac
aagcaagtcaacatcaaaaacaaacactgtgaggtttgtgtatcctcaaa
caagggagtggcaccatttggaggtgtggcctgttgaatagggtgaactg
gttggagatagtgtgacactggaagtgggcataaaaatccccctagtgtc
tggaggcagtcttccctaacagcctttggatgaaagagaaacctcacctg
ctgtgcggctgcttgaactgcctgctccacctgatgaatagatctgaacc
t
gaattctgggagtgagtgacctgcagggggacaatgagcaggatgtaaaa
tgaataagtaaaaacaaatttaatttaatttaatttaatttaatttaatt
taaaaaaaaaaagatacaccccaaactgaaagggaatatccactgaaaat
tcaggggcagaagaatttattacttttcagggaggctctgggagctgtca
cagaactacccaaaacaatgttattctcctgtcaccagaattcttttaag
ccagaagggaaagaccactcaggcaatccctgcaagaccaggacctgcct
ttcttttcccaccaaaagaagagacaccccgaatgcttaaagttctccta
ggaaacacaggaaaggtggaccttggaagactccttaaaggaaagagaaa
aacaaccactcaggtaacaaggctgacctgaggctagcagcaggagtggg
gagtgtcacatggcatacatccaggccagctctaggtcagacatggaggg
aatttggatgaatctgacactaacaatggagctttgggttggcacttatt
atttaaaccttctctgctttctttcattacatcaaatcacccgtggttca
atttaaattaatgtatgtattcataaatacactcaaactcacttgttcac
aagctctatatgtgtgaagagccttacctactataatttattggtaccgc
tcccgaatcagcacatttatttttgtgtcagtcatgccatgcaaatatga
aaggaagaataaaaggaggaaatctggtaggtgtatttctgctaagttca
cccagtgccatctctttgttaccatggctttgtttgttttagcttgtagt
tctgattttgtaagctattttattagatattttcttcatttacatttcaa
tgctatcctgaaagtccctataccctccccggccctgctcccacccaccc
actccacttcttggccctggcgttccctggactggggcatataagttgca
atacatgggctttcttccactgatggcggactagcatctttgctcatatg
cagctagagaccgagcttgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_19579943_19581170
seq2: B6Ng01-058J12.b_44_1244 (reverse)

seq1  AGGTTCAGATCATTATCATCAAGGTGGGAGCATGGCAGTATCCAGGCAGG  50
      ||||||||||| |  ||||| |||| |||||| |||||  | || |||| 
seq2  AGGTTCAGATC-TATTCATC-AGGT-GGAGCA-GGCAG--TTCAAGCAG-  43

seq1  CACGGCACAGGCAGAGCTGAGAGTTCTACGTCTTCATCCAAAGGCTGCTA  100
        | ||||||    || ||||  ||||     ||||||||||||||| ||
seq2  --CCGCACAG---CAGGTGAGGTTTCT---CTTTCATCCAAAGGCTGTTA  85

seq1  GTGGAAGACTGACTTCCAGACAACTAGGGTGAGGATCTTATGCCCACACT  150
      | ||||||||| | ||||||| ||||||| ||   | |||||||  ||||
seq2  G-GGAAGACTG-CCTCCAGAC-ACTAGGGGGA--TTTTTATGCC--CACT  128

seq1  CACAGTGTCACACCTACTCCAACCAGGTCACACCTATTCCAACAAGGCCA  200
        |||||||||||   |||||||||| |||| |||||| |||| ||||||
seq2  TCCAGTGTCACACTATCTCCAACCAGTTCAC-CCTATT-CAAC-AGGCCA  175

seq1  CACCTCCAAATGGTGCCACTCCCTGGTCTGAGGATACACAAACCCTCACA  250
      |||||||||||||||||||||||| || |||||||||||||| |||||||
seq2  CACCTCCAAATGGTGCCACTCCCTTGTTTGAGGATACACAAA-CCTCACA  224

seq1  GTGTTTGTTTTTGATGTTGACTTGCTTGTCTTTACTCCAGGCAGATCTGG  300
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GTGTTTGTTTTTGATGTTGACTTGCTTGTCTTTACT-CAGGCAGATCTGG  273

seq1  GAATTGCAATCCCACCAAGCGTTTGGGATTATAGGCATGGACCAACATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGCAATCCCACCAAGCGTTTGGGATTATAGGCATGGACCAACATGG  323

seq1  TAAATACTAAGGTTTTATAGAAATAAAATTACTTAGGTATAGATAAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACTAAGGTTTTATAGAAATAAAATTACTTAGGTATAGATAAAAAT  373

seq1  GCCTTTAGGTGAAAAGGTTAGAAAACGTAACTGCTTAAACAGAAATGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTAGGTGAAAAGGTTAGAAAACGTAACTGCTTAAACAGAAATGCTT  423

seq1  GTACCAATGAAGAACAATTGTCATTCCTTCTTGGTAGAAATGCACAGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAATGAAGAACAATTGTCATTCCTTCTTGGTAGAAATGCACAGCAG  473

seq1  AGCTAAGACAGAAAATGACTGGGCTGCTTTCTATCAAACCATCATACATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAGACAGAAAATGACTGGGCTGCTTTCTATCAAACCATCATACATT  523

seq1  CTACTGATCTCGTCTCAACCCAAACGAGTTCAAAACTTATGACCACACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGATCTCGTCTCAACCCAAACGAGTTCAAAACTTATGACCACACTG  573

seq1  AAAGCCTGAACAAAATGTGAATTGAATCTTTATTCCTAATTGCTTACAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTGAACAAAATGTGAATTGAATCTTTATTCCTAATTGCTTACAAT  623

seq1  TCAAGAGACTCTAGTACAGCATTGAAATGACAATATGCACTTCTCAGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAGACTCTAGTACAGCATTGAAATGACAATATGCACTTCTCAGAAC  673

seq1  CCACATAACTAGTATGCCACAAGAAATGAAATTTAATTAAATTGTACATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATAACTAGTATGCCACAAGAAATGAAATTTAATTAAATTGTACATT  723

seq1  TCTGTACAGTGTTTCTATCTGATACTGCTTTCAAAGTGATACTGTTCTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTACAGTGTTTCTATCTGATACTGCTTTCAAAGTGATACTGTTCTAT  773

seq1  AGTTTCTGGTTATATATGTGACAACTCATTGTCACTCTTCATTATTAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTGGTTATATATGTGACAACTCATTGTCACTCTTCATTATTAAAT  823

seq1  TAGTTTGATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTGATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAA  873

seq1  CATTTTGGTCACAACAATTTACTCATAATGGTTTGCTGGCTGTAACAAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGGTCACAACAATTTACTCATAATGGTTTGCTGGCTGTAACAAGT  923

seq1  ACCCCATGCCACTGGAAAGCTCTAAATACAGTAGGAGGAACACATATATG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCATGCCACTGGAAAGCTCTAAATACAGTAGGAGGAACACATATATG  973

seq1  AGAATTTTATAGTATCTACCTCAGCTCAGTTCAGACCCTTAAGTTCTAGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTTATAGTATCTACCTCAGCTCAGTTCAGACCCTTAAGTTCTAGA  1023

seq1  CTGAGGAAATCCTCCTAGTTGTCCTTATCCAAGTAGCTAGGTCTCCAGGC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGAAATCCTCCTAGTTGTCCTTATCCAAGTAGCTAGGTCTCCAGGC  1073

seq1  ATGTCATACCTGCCTCCAGTTTGATTTGTCTTTATAAACATTATCTTTAT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATACCTGCCTCCAGTTTGATTTGTCTTTATAAACATTATCTTTAT  1123

seq1  TTATCCACTAAGATTTTCAGGTAACAATCCTTTCAAATAAATTAGAAAAA  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCACTAAGATTTTCAGGTAACAATCCTTTCAAATAAATTAGAAAAA  1173

seq1  AGGTAGAAATACTAATATATTTGAATTC  1228
      ||||||||||||||||||||||||||||
seq2  AGGTAGAAATACTAATATATTTGAATTC  1201

seq1: chr4_19432082_19433173
seq2: B6Ng01-058J12.g_69_1140

seq1  GAATTCTGGGAGTGAGTGACCTGCAGGGGGACAATGAGCAGGATGTAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGAGTGAGTGACCTGCAGGGGGACAATGAGCAGGATGTAAAA  50

seq1  TGAATAAGTAAAAACAAATTTAATTTAATTTAATTTAATTTAATTTAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAGTAAAAACAAATTTAATTTAATTTAATTTAATTTAATTTAATT  100

seq1  TAAAAAAAAAAAGATACACCCCAAACTGAAAGGGAATATCCACTGAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAAAAGATACACCCCAAACTGAAAGGGAATATCCACTGAAAAT  150

seq1  TCAGGGGCAGAAGAATTTATTACTTTTCAGGGAGGCTCTGGGAGCTGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGGCAGAAGAATTTATTACTTTTCAGGGAGGCTCTGGGAGCTGTCA  200

seq1  CAGAACTACCCAAAACAATGTTATTCTCCTGTCACCAGAATTCTTTTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTACCCAAAACAATGTTATTCTCCTGTCACCAGAATTCTTTTAAG  250

seq1  CCAGAAGGGAAAGACCACTCAGGCAATCCCTGCAAGACCAGGACCTGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGGGAAAGACCACTCAGGCAATCCCTGCAAGACCAGGACCTGCCT  300

seq1  TTCTTTTCCCACCAAAAGAAGAGACACCCCGAATGCTTAAAGTTCTCCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCCCACCAAAAGAAGAGACACCCCGAATGCTTAAAGTTCTCCTA  350

seq1  GGAAACACAGGAAAGGTGGACCTTGGAAGACTCCTTAAAGGAAAGAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACACAGGAAAGGTGGACCTTGGAAGACTCCTTAAAGGAAAGAGAAA  400

seq1  AACAACCACTCAGGTAACAAGGCTGACCTGAGGCTAGCAGCAGGAGTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACCACTCAGGTAACAAGGCTGACCTGAGGCTAGCAGCAGGAGTGGG  450

seq1  GAGTGTCACATGGCATACATCCAGGCCAGCTCTAGGTCAGACATGGAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTCACATGGCATACATCCAGGCCAGCTCTAGGTCAGACATGGAGGG  500

seq1  AATTTGGATGAATCTGACACTAACAATGGAGCTTTGGGTTGGCACTTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGGATGAATCTGACACTAACAATGGAGCTTTGGGTTGGCACTTATT  550

seq1  ATTTAAACCTTCTCTGCTTTCTTTCATTACATCAAATCACCCGTGGTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAACCTTCTCTGCTTTCTTTCATTACATCAAATCACCCGTGGTTCA  600

seq1  ATTTAAATTAATGTATGTATTCATAAATACACTCAAACTCACTTGTTCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAATTAATGTATGTATTCATAAATACACTCAAACTCACTTGTTCAC  650

seq1  AAGCTCTATATGTGTGAAGAGCCTTACCTACTATAATTTATTGGTACCGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTATATGTGTGAAGAGCCTTACCTACTATAATTTATTGGTACCGC  700

seq1  TCCCGAATCAGCACATTTATTTTTGTGTCAGTCATGCCATGCAAATATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGAATCAGCACATTTATTTTTGTGTCAGTCATGCCATGCAAATATGA  750

seq1  AAGGAAGAATAAAAGGAGGAAATCTGGTAGGTGTATTTCTGCTAAGTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGAATAAAAGGAGGAAATCTGGTAGGTGTATTTCTGCTAAGTTCA  800

seq1  CCCAGTGCCATCTCTTTGTTACCATGGCTTTGTTTGTTTTAGCTTGTAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTGCCATCTCTTTGTTACCATGGCTTTGTTTGTTTTAGCTTGTAGT  850

seq1  TCTGATTTTGTAAGCTATTTTTATTAGATATTTTCTTCATTTACATTTCA  900
      ||||||||||||||||| ||||||||||||||||||||||||||||||| 
seq2  TCTGATTTTGTAAGCTA-TTTTATTAGATATTTTCTTCATTTACATTTC-  898

seq1  AATGCTATCCTGAAAGTCCCCTATACCCTCCCCCGGCCCTGCTCCCCAAC  950
      ||||||||||||||||| ||||||||||| ||||||||||||||||  ||
seq2  AATGCTATCCTGAAAGT-CCCTATACCCT-CCCCGGCCCTGCTCCC--AC  944

seq1  CCACCCACTCCCACTTCTTGGCCCTGGCGTTCCCCTGGACTGGGGCATAT  1000
      ||||||||| ||||||||||||||||||||| ||||||||||||||||||
seq2  CCACCCACT-CCACTTCTTGGCCCTGGCGTT-CCCTGGACTGGGGCATAT  992

seq1  AAAGTTTGCAATACCAATGGGCCTCTCTTTCCACTGATGGCCGACTAGGC  1050
      ||   |||||||||  ||||| || || ||||||||||||| ||||||  
seq2  AA--GTTGCAATAC--ATGGG-CTTTC-TTCCACTGATGGCGGACTAG--  1034

seq1  CATCTTCTGCTACATATGCAGCTAGAGACACGAGCTCTGGGG  1092
      |||||| |||| ||||||||||||||||| |||||| |||||
seq2  CATCTT-TGCT-CATATGCAGCTAGAGAC-CGAGCT-TGGGG  1072