BAC Information

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BAC

Clone NameB6Ng01-058J12
Chromosome4 (Build37)
Map Location 19,432,082 - 19,581,170
singlet/doubletdoublet
Overlap geneCngb3, Cpne3, LOC100040306, 2410005O16Rik, Wwp1
Upstream geneLOC667251, LOC435772, LOC623122
Downstream geneSlc7a13, Atp6v0d2, LOC667282, Ttpa, LOC667301, EG664800, E130310K16Rik
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-058J12.bB6Ng01-058J12.g
ACCDH880129DH880130
length1,2011,072
definitionDH880129|Mus musculus domesticus DNA, BAC clone: B6Ng01-058J12, 5' end.DH880130|Mus musculus domesticus DNA, BAC clone: B6Ng01-058J12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,579,943 - 19,581,170)(19,432,082 - 19,433,173)
sequence
gaattcaaatatattagtatttctaccttttttctaatttatttgaaagg
attgttacctgaaaatcttagtggataaataaagataatgtttataaaga
caaatcaaactggaggcaggtatgacatgcctggagacctagctacttgg
ataaggacaactaggaggatttcctcagtctagaacttaagggtctgaac
tgagctgaggtagatactataaaattctcatatatgtgttcctcctactg
tatttagagctttccagtggcatggggtacttgttacagccagcaaacca
ttatgagtaaattgttgtgaccaaaatgttcacacacacacacacacaca
cacacacacacacacatatatcaaactaatttaataatgaagagtgacaa
tgagttgtcacatatataaccagaaactatagaacagtatcactttgaaa
gcagtatcagatagaaacactgtacagaaatgtacaatttaattaaattt
catttcttgtggcatactagttatgtgggttctgagaagtgcatattgtc
atttcaatgctgtactagagtctcttgaattgtaagcaattaggaataaa
gattcaattcacattttgttcaggctttcagtgtggtcataagttttgaa
ctcgtttgggttgagacgagatcagtagaatgtatgatggtttgatagaa
agcagcccagtcattttctgtcttagctctgctgtgcatttctaccaaga
aggaatgacaattgttcttcattggtacaagcatttctgtttaagcagtt
acgttttctaaccttttcacctaaaggcatttttatctatacctaagtaa
ttttatttctataaaaccttagtatttaccatgttggtccatgcctataa
tcccaaacgcttggtgggattgcaattcccagatctgcctgagtaaagac
aagcaagtcaacatcaaaaacaaacactgtgaggtttgtgtatcctcaaa
caagggagtggcaccatttggaggtgtggcctgttgaatagggtgaactg
gttggagatagtgtgacactggaagtgggcataaaaatccccctagtgtc
tggaggcagtcttccctaacagcctttggatgaaagagaaacctcacctg
ctgtgcggctgcttgaactgcctgctccacctgatgaatagatctgaacc
t
gaattctgggagtgagtgacctgcagggggacaatgagcaggatgtaaaa
tgaataagtaaaaacaaatttaatttaatttaatttaatttaatttaatt
taaaaaaaaaaagatacaccccaaactgaaagggaatatccactgaaaat
tcaggggcagaagaatttattacttttcagggaggctctgggagctgtca
cagaactacccaaaacaatgttattctcctgtcaccagaattcttttaag
ccagaagggaaagaccactcaggcaatccctgcaagaccaggacctgcct
ttcttttcccaccaaaagaagagacaccccgaatgcttaaagttctccta
ggaaacacaggaaaggtggaccttggaagactccttaaaggaaagagaaa
aacaaccactcaggtaacaaggctgacctgaggctagcagcaggagtggg
gagtgtcacatggcatacatccaggccagctctaggtcagacatggaggg
aatttggatgaatctgacactaacaatggagctttgggttggcacttatt
atttaaaccttctctgctttctttcattacatcaaatcacccgtggttca
atttaaattaatgtatgtattcataaatacactcaaactcacttgttcac
aagctctatatgtgtgaagagccttacctactataatttattggtaccgc
tcccgaatcagcacatttatttttgtgtcagtcatgccatgcaaatatga
aaggaagaataaaaggaggaaatctggtaggtgtatttctgctaagttca
cccagtgccatctctttgttaccatggctttgtttgttttagcttgtagt
tctgattttgtaagctattttattagatattttcttcatttacatttcaa
tgctatcctgaaagtccctataccctccccggccctgctcccacccaccc
actccacttcttggccctggcgttccctggactggggcatataagttgca
atacatgggctttcttccactgatggcggactagcatctttgctcatatg
cagctagagaccgagcttgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_19579943_19581170
seq2: B6Ng01-058J12.b_44_1244 (reverse)

seq1  AGGTTCAGATCATTATCATCAAGGTGGGAGCATGGCAGTATCCAGGCAGG  50
      ||||||||||| |  ||||| |||| |||||| |||||  | || |||| 
seq2  AGGTTCAGATC-TATTCATC-AGGT-GGAGCA-GGCAG--TTCAAGCAG-  43

seq1  CACGGCACAGGCAGAGCTGAGAGTTCTACGTCTTCATCCAAAGGCTGCTA  100
        | ||||||    || ||||  ||||     ||||||||||||||| ||
seq2  --CCGCACAG---CAGGTGAGGTTTCT---CTTTCATCCAAAGGCTGTTA  85

seq1  GTGGAAGACTGACTTCCAGACAACTAGGGTGAGGATCTTATGCCCACACT  150
      | ||||||||| | ||||||| ||||||| ||   | |||||||  ||||
seq2  G-GGAAGACTG-CCTCCAGAC-ACTAGGGGGA--TTTTTATGCC--CACT  128

seq1  CACAGTGTCACACCTACTCCAACCAGGTCACACCTATTCCAACAAGGCCA  200
        |||||||||||   |||||||||| |||| |||||| |||| ||||||
seq2  TCCAGTGTCACACTATCTCCAACCAGTTCAC-CCTATT-CAAC-AGGCCA  175

seq1  CACCTCCAAATGGTGCCACTCCCTGGTCTGAGGATACACAAACCCTCACA  250
      |||||||||||||||||||||||| || |||||||||||||| |||||||
seq2  CACCTCCAAATGGTGCCACTCCCTTGTTTGAGGATACACAAA-CCTCACA  224

seq1  GTGTTTGTTTTTGATGTTGACTTGCTTGTCTTTACTCCAGGCAGATCTGG  300
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GTGTTTGTTTTTGATGTTGACTTGCTTGTCTTTACT-CAGGCAGATCTGG  273

seq1  GAATTGCAATCCCACCAAGCGTTTGGGATTATAGGCATGGACCAACATGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGCAATCCCACCAAGCGTTTGGGATTATAGGCATGGACCAACATGG  323

seq1  TAAATACTAAGGTTTTATAGAAATAAAATTACTTAGGTATAGATAAAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATACTAAGGTTTTATAGAAATAAAATTACTTAGGTATAGATAAAAAT  373

seq1  GCCTTTAGGTGAAAAGGTTAGAAAACGTAACTGCTTAAACAGAAATGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTAGGTGAAAAGGTTAGAAAACGTAACTGCTTAAACAGAAATGCTT  423

seq1  GTACCAATGAAGAACAATTGTCATTCCTTCTTGGTAGAAATGCACAGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAATGAAGAACAATTGTCATTCCTTCTTGGTAGAAATGCACAGCAG  473

seq1  AGCTAAGACAGAAAATGACTGGGCTGCTTTCTATCAAACCATCATACATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAGACAGAAAATGACTGGGCTGCTTTCTATCAAACCATCATACATT  523

seq1  CTACTGATCTCGTCTCAACCCAAACGAGTTCAAAACTTATGACCACACTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGATCTCGTCTCAACCCAAACGAGTTCAAAACTTATGACCACACTG  573

seq1  AAAGCCTGAACAAAATGTGAATTGAATCTTTATTCCTAATTGCTTACAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTGAACAAAATGTGAATTGAATCTTTATTCCTAATTGCTTACAAT  623

seq1  TCAAGAGACTCTAGTACAGCATTGAAATGACAATATGCACTTCTCAGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAGACTCTAGTACAGCATTGAAATGACAATATGCACTTCTCAGAAC  673

seq1  CCACATAACTAGTATGCCACAAGAAATGAAATTTAATTAAATTGTACATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATAACTAGTATGCCACAAGAAATGAAATTTAATTAAATTGTACATT  723

seq1  TCTGTACAGTGTTTCTATCTGATACTGCTTTCAAAGTGATACTGTTCTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTACAGTGTTTCTATCTGATACTGCTTTCAAAGTGATACTGTTCTAT  773

seq1  AGTTTCTGGTTATATATGTGACAACTCATTGTCACTCTTCATTATTAAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTGGTTATATATGTGACAACTCATTGTCACTCTTCATTATTAAAT  823

seq1  TAGTTTGATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTGATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAA  873

seq1  CATTTTGGTCACAACAATTTACTCATAATGGTTTGCTGGCTGTAACAAGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTGGTCACAACAATTTACTCATAATGGTTTGCTGGCTGTAACAAGT  923

seq1  ACCCCATGCCACTGGAAAGCTCTAAATACAGTAGGAGGAACACATATATG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCATGCCACTGGAAAGCTCTAAATACAGTAGGAGGAACACATATATG  973

seq1  AGAATTTTATAGTATCTACCTCAGCTCAGTTCAGACCCTTAAGTTCTAGA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTTTATAGTATCTACCTCAGCTCAGTTCAGACCCTTAAGTTCTAGA  1023

seq1  CTGAGGAAATCCTCCTAGTTGTCCTTATCCAAGTAGCTAGGTCTCCAGGC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGAAATCCTCCTAGTTGTCCTTATCCAAGTAGCTAGGTCTCCAGGC  1073

seq1  ATGTCATACCTGCCTCCAGTTTGATTTGTCTTTATAAACATTATCTTTAT  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATACCTGCCTCCAGTTTGATTTGTCTTTATAAACATTATCTTTAT  1123

seq1  TTATCCACTAAGATTTTCAGGTAACAATCCTTTCAAATAAATTAGAAAAA  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCACTAAGATTTTCAGGTAACAATCCTTTCAAATAAATTAGAAAAA  1173

seq1  AGGTAGAAATACTAATATATTTGAATTC  1228
      ||||||||||||||||||||||||||||
seq2  AGGTAGAAATACTAATATATTTGAATTC  1201

seq1: chr4_19432082_19433173
seq2: B6Ng01-058J12.g_69_1140

seq1  GAATTCTGGGAGTGAGTGACCTGCAGGGGGACAATGAGCAGGATGTAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGGAGTGAGTGACCTGCAGGGGGACAATGAGCAGGATGTAAAA  50

seq1  TGAATAAGTAAAAACAAATTTAATTTAATTTAATTTAATTTAATTTAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAGTAAAAACAAATTTAATTTAATTTAATTTAATTTAATTTAATT  100

seq1  TAAAAAAAAAAAGATACACCCCAAACTGAAAGGGAATATCCACTGAAAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAAAAAAAGATACACCCCAAACTGAAAGGGAATATCCACTGAAAAT  150

seq1  TCAGGGGCAGAAGAATTTATTACTTTTCAGGGAGGCTCTGGGAGCTGTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGGCAGAAGAATTTATTACTTTTCAGGGAGGCTCTGGGAGCTGTCA  200

seq1  CAGAACTACCCAAAACAATGTTATTCTCCTGTCACCAGAATTCTTTTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTACCCAAAACAATGTTATTCTCCTGTCACCAGAATTCTTTTAAG  250

seq1  CCAGAAGGGAAAGACCACTCAGGCAATCCCTGCAAGACCAGGACCTGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAGGGAAAGACCACTCAGGCAATCCCTGCAAGACCAGGACCTGCCT  300

seq1  TTCTTTTCCCACCAAAAGAAGAGACACCCCGAATGCTTAAAGTTCTCCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCCCACCAAAAGAAGAGACACCCCGAATGCTTAAAGTTCTCCTA  350

seq1  GGAAACACAGGAAAGGTGGACCTTGGAAGACTCCTTAAAGGAAAGAGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACACAGGAAAGGTGGACCTTGGAAGACTCCTTAAAGGAAAGAGAAA  400

seq1  AACAACCACTCAGGTAACAAGGCTGACCTGAGGCTAGCAGCAGGAGTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAACCACTCAGGTAACAAGGCTGACCTGAGGCTAGCAGCAGGAGTGGG  450

seq1  GAGTGTCACATGGCATACATCCAGGCCAGCTCTAGGTCAGACATGGAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTCACATGGCATACATCCAGGCCAGCTCTAGGTCAGACATGGAGGG  500

seq1  AATTTGGATGAATCTGACACTAACAATGGAGCTTTGGGTTGGCACTTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGGATGAATCTGACACTAACAATGGAGCTTTGGGTTGGCACTTATT  550

seq1  ATTTAAACCTTCTCTGCTTTCTTTCATTACATCAAATCACCCGTGGTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAACCTTCTCTGCTTTCTTTCATTACATCAAATCACCCGTGGTTCA  600

seq1  ATTTAAATTAATGTATGTATTCATAAATACACTCAAACTCACTTGTTCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAATTAATGTATGTATTCATAAATACACTCAAACTCACTTGTTCAC  650

seq1  AAGCTCTATATGTGTGAAGAGCCTTACCTACTATAATTTATTGGTACCGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTATATGTGTGAAGAGCCTTACCTACTATAATTTATTGGTACCGC  700

seq1  TCCCGAATCAGCACATTTATTTTTGTGTCAGTCATGCCATGCAAATATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGAATCAGCACATTTATTTTTGTGTCAGTCATGCCATGCAAATATGA  750

seq1  AAGGAAGAATAAAAGGAGGAAATCTGGTAGGTGTATTTCTGCTAAGTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGAATAAAAGGAGGAAATCTGGTAGGTGTATTTCTGCTAAGTTCA  800

seq1  CCCAGTGCCATCTCTTTGTTACCATGGCTTTGTTTGTTTTAGCTTGTAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTGCCATCTCTTTGTTACCATGGCTTTGTTTGTTTTAGCTTGTAGT  850

seq1  TCTGATTTTGTAAGCTATTTTTATTAGATATTTTCTTCATTTACATTTCA  900
      ||||||||||||||||| ||||||||||||||||||||||||||||||| 
seq2  TCTGATTTTGTAAGCTA-TTTTATTAGATATTTTCTTCATTTACATTTC-  898

seq1  AATGCTATCCTGAAAGTCCCCTATACCCTCCCCCGGCCCTGCTCCCCAAC  950
      ||||||||||||||||| ||||||||||| ||||||||||||||||  ||
seq2  AATGCTATCCTGAAAGT-CCCTATACCCT-CCCCGGCCCTGCTCCC--AC  944

seq1  CCACCCACTCCCACTTCTTGGCCCTGGCGTTCCCCTGGACTGGGGCATAT  1000
      ||||||||| ||||||||||||||||||||| ||||||||||||||||||
seq2  CCACCCACT-CCACTTCTTGGCCCTGGCGTT-CCCTGGACTGGGGCATAT  992

seq1  AAAGTTTGCAATACCAATGGGCCTCTCTTTCCACTGATGGCCGACTAGGC  1050
      ||   |||||||||  ||||| || || ||||||||||||| ||||||  
seq2  AA--GTTGCAATAC--ATGGG-CTTTC-TTCCACTGATGGCGGACTAG--  1034

seq1  CATCTTCTGCTACATATGCAGCTAGAGACACGAGCTCTGGGG  1092
      |||||| |||| ||||||||||||||||| |||||| |||||
seq2  CATCTT-TGCT-CATATGCAGCTAGAGAC-CGAGCT-TGGGG  1072