BAC Information

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BAC

Clone NameB6Ng01-060H01
Chromosome4 (Build37)3 (Build37)
Map Location 96,651,419 - 96,651,48172,145,597 - 72,146,821
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneHook1, Cyp2j13, LOC242546, LOC546837, Cyp2j11, LOC665095, Cyp2j6, Cyp2j9, Cyp2j5, LOC100039415, LOC620779
Downstream geneLOC620883, EG638698, Nfia
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-060H01.bB6Ng01-060H01.g
ACCDH881412DH881413
length2281,197
definitionDH881412|Mus musculus domesticus DNA, BAC clone: B6Ng01-060H01, 5' end.DH881413|Mus musculus domesticus DNA, BAC clone: B6Ng01-060H01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(96,651,419 - 96,651,481)(72,145,597 - 72,146,821)
sequence
catatatctgaaagagagcaaggagtgttaggctggaggatttcaagaaa
ggaaatgaaaaaatattctcctcctcctccttctcctccttctcctcctc
gtcctcgtcctcgtccttgtcctcgtcctccccctcgtcctcgtccttcc
ccttcttccccttccccttccctttcttccccttccccttccccttcccc
ttcttccccttctccttccccttcccct
gaattccataacagaaaaataaggatttcaaaacctcactggctatctag
cctagaggaaatggtgagatttcagttcagtgggagactgctactcaggg
aattcaggcagagcgcaataaagaaaaaaacaaccaatgacatcctacaa
tgactttcctgtgggaattcaggaacacaagcaccccttactcatgccca
caagacatacagagcaatttaaaaagtgagtaataaacttaagaatatat
ttcctcaaaggaatgtaatcattttacaaacaaacatataagaaaacact
caaccacacatcatcaagaaagtgtgaatagcacacaaaattctttacta
aggatttctattgtcacagtactaaagatagcaagcaataccaagcatgt
agaaagagaacacttataccgtggaatggaatataattgttcaaattttg
tggaaaaaaatcacaagttgtctcataaaagaaaactctccagattcttg
tatgcatatatgcagttaacgaaatcacaatattttaaagatgtattctc
ctattagttgtgtaatacctctcagaaaaggctagtaatagaagcataaa
tacctgttcacttaagggttgaataaaaataatgtggtatatacacactt
gatgccattcagtgatgataataacaatatatagtatcctgttatttgca
acaatgaggacaaaacagcagttcactggtattacatgaaatagtaggca
cagaataacgagaacagcatgatgtcattcatgtactggatttgaaaatc
ccatggaattagagcatagactatgaatttctccttgcttgatgtttttt
tccaaagacattcttgaagatttcttcaagatgatatgtttaacttgata
gaagtatgacacaatgtgcaaaacactgagcatctcacagtatctcaccc
gtacacccgtatcacgactttaatgtagcagacaaaataattaaaagaca
gggcatgtttatattacatagatagatattgagtatttaacataaaatca
taaagtatctgagataagatatggtatgttaaacatgtagaatttattat
attatccggtacctattacaactactaggtttgaaggttagataaagaat
ccccaacggatccagattgcattcttacaaaacctcgagatcacatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_96651419_96651481
seq2: B6Ng01-060H01.b_195_278 (reverse)

seq1  ------------AGGGGGAGGGGAAGAA---------GAAGGGGAAGGGG  29
                  ||| | ||||||||||         |||||||||||||
seq2  AGGGGAAGGGGAAGGAGAAGGGGAAGAAGGGGAAGGGGAAGGGGAAGGGG  50

seq1  CAGAAGGGGACATAGTAGGGGAAGAAGGGGAAGG  63
       |||| ||||    | ||||||||||||||||||
seq2  AAGAAAGGGAAGGGGAAGGGGAAGAAGGGGAAGG  84

seq1: chr3_72145597_72146821
seq2: B6Ng01-060H01.g_66_1262

seq1  GAATTCCATAACAGAAAAATAAGGATTTCAAAACCTCACTGGCTATCTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATAACAGAAAAATAAGGATTTCAAAACCTCACTGGCTATCTAG  50

seq1  CCTAGAGGAAATGGTGAGATTTCAGTTCAGTGGGAGACTGCTACTCAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAGGAAATGGTGAGATTTCAGTTCAGTGGGAGACTGCTACTCAGGG  100

seq1  AATTCAGGCAGAGCGCAATAAAGAAAAAAACAACCAATGACATCCTACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCAGGCAGAGCGCAATAAAGAAAAAAACAACCAATGACATCCTACAA  150

seq1  TGACTTTCCTGTGGGAATTCAGGAACACAAGCACCCCTTACTCATGCCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTTCCTGTGGGAATTCAGGAACACAAGCACCCCTTACTCATGCCCA  200

seq1  CAAGACATACAGAGCAATTTAAAAAGTGAGTAATAAACTTAAGAATATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACATACAGAGCAATTTAAAAAGTGAGTAATAAACTTAAGAATATAT  250

seq1  TTCCTCAAAGGAATGTAATCATTTTACAAACAAACATATAAGAAAACACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCAAAGGAATGTAATCATTTTACAAACAAACATATAAGAAAACACT  300

seq1  CAACCACACATCATCAAGAAAGTGTGAATAGCACACAAAATTCTTTACTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCACACATCATCAAGAAAGTGTGAATAGCACACAAAATTCTTTACTA  350

seq1  AGGATTTCTATTGTCACAGTACTAAAGATAGCAAGCAATACCAAGCATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTCTATTGTCACAGTACTAAAGATAGCAAGCAATACCAAGCATGT  400

seq1  AGAAAGAGAACACTTATACCGTGGAATGGAATATAATTGTTCAAATTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGAGAACACTTATACCGTGGAATGGAATATAATTGTTCAAATTTTG  450

seq1  TGGAAAAAAATCACAAGTTGTCTCATAAAAGAAAACTCTCCAGATTCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAAAAAATCACAAGTTGTCTCATAAAAGAAAACTCTCCAGATTCTTG  500

seq1  TATGCATATATGCAGTTAACGAAATCACAATATTTTAAAGATGTATTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCATATATGCAGTTAACGAAATCACAATATTTTAAAGATGTATTCTC  550

seq1  CTATTAGTTGTGTAATACCTCTCAGAAAAGGCTAGTAATAGAAGCATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTAGTTGTGTAATACCTCTCAGAAAAGGCTAGTAATAGAAGCATAAA  600

seq1  TACCTGTTCACTTAAGGGTTGAATAAAAATAATGTGGTATATACACACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGTTCACTTAAGGGTTGAATAAAAATAATGTGGTATATACACACTT  650

seq1  GATGCCATTCAGTGATGATAATAACAATATATAGTATCCTGTTATTTGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCCATTCAGTGATGATAATAACAATATATAGTATCCTGTTATTTGCA  700

seq1  ACAATGAGGACAAAACAGCAGTTCACTGGTATTACATGAAATAGTAGGCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGAGGACAAAACAGCAGTTCACTGGTATTACATGAAATAGTAGGCA  750

seq1  CAGAATAACGAGAACAGCATGATGTCATTCATGTACTGGATTTGAAAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATAACGAGAACAGCATGATGTCATTCATGTACTGGATTTGAAAATC  800

seq1  CCATGGAATTAGAGCATAGACTATGAATTTCTCCTTGCTTGATGTTTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGAATTAGAGCATAGACTATGAATTTCTCCTTGCTTGATGTTTTTT  850

seq1  TCCAAAGACATTCTTGAAGATTTCTTCAAGATGATATGTTTAACTTGATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGACATTCTTGAAGATTTCTTCAAGATGATATGTTTAACTTGATA  900

seq1  GAAGTATGACACAATGTGCAAAACACTGAGCATCTCACAGTATCTCACCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTATGACACAATGTGCAAAACACTGAGCATCTCACAGTATCTCACCC  950

seq1  GTACACCCGTATCAGGACTTTTAATGTAGCAGACAAAATAATTAAAAGAC  1000
      |||||||||||||| ||| |||||||||||||||||||||||||||||||
seq2  GTACACCCGTATCACGAC-TTTAATGTAGCAGACAAAATAATTAAAAGAC  999

seq1  AGGGCATGTTTAATATAACATAGAAAAAGATATTGAGTATTTTAACCATA  1050
      ||||||||||| |||| ||||||  | |||||||||||||||  | ||||
seq2  AGGGCATGTTT-ATATTACATAG--ATAGATATTGAGTATTT--AACATA  1044

seq1  AAATCATAAAGTATCTGAGGATAAAGATATGGTATGTTAAACATGTAGAA  1100
      |||||||||||||||||| ||| |||||||||||||||||||||||||||
seq2  AAATCATAAAGTATCTGA-GAT-AAGATATGGTATGTTAAACATGTAGAA  1092

seq1  TTTTATTATATTTATCTGTACCTATTTACAAAATTAGTTTAGTTTTAGAA  1150
       |||||||||||   | |||||||||   | || ||   ||| ||| |||
seq2  -TTTATTATATTATCCGGTACCTATT---ACAACTA--CTAGGTTT-GAA  1135

seq1  GTTAAGTAATAGGTAATCCCACCAAACAGATATCTCAAGTAGCATTTTCT  1200
      | | ||  |||   ||||   || ||| |||    ||  | |||  ||||
seq2  GGTTAG--ATAAAGAATC---CCCAACGGAT---CCAGATTGCA--TTCT  1175

seq1  TACAAAAAACTTCTGAGATCACATT  1225
      |||  ||||| || |||||||||||
seq2  TAC--AAAACCTC-GAGATCACATT  1197