BAC Information

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BAC

Clone NameB6Ng01-062E11
Chromosome4 (Build37)
Map Location 84,137,828 - 84,287,664
singlet/doubletdoublet
Overlap geneBnc2
Upstream geneLOC100040611, 4930473A06Rik, LOC668010
Downstream geneLOC100040660, LOC624465, LOC100040284, D530005L17Rik, LOC622811, LOC100040303, Sh3gl2, A930009N24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062E11.bB6Ng01-062E11.g
ACCDH882727DH882728
length9001,184
definitionDH882727|Mus musculus domesticus DNA, BAC clone: B6Ng01-062E11, 5' end.DH882728|Mus musculus domesticus DNA, BAC clone: B6Ng01-062E11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(84,286,765 - 84,287,664)(84,137,828 - 84,139,028)
sequence
gaattcaccatgtgagaaactggacagttgccattcgaagatagggagag
aagttgccagtagcagagagagggtggagcactgtttgccttctctcctc
cagacacatagtagggtcatgttgggcaaatgaccaaccattccttaagc
ctgattccttgtttgtgtggagaagatatttgaacaaggtctcaagtttt
gttcagcgttttcttccatttaaattctatatgggaagtatttaaaattg
aggaattattgaaaatatttttcttagaaattagtattgctatgctttgt
cttaagggttccaaagattctagctcacttgttttatagtcaaggccatg
agtagggtggagggcttcatggctttttatgtaaatttatgttgtagtcc
tagtaaactagtcagcatttaaagctattttttaacttactatgctgctg
gagttggaagggctcattcatgttaagcaaagacactgtttgtttttttc
gagacagggtttctctgtgtagccctggctgtcctggtactcactttgta
gaccaggctggcctccaactcagaaatcggcctgcctctgcctcctgaat
gctaggattaaaggcatacgctgccacactgttattgctgaagtctggga
cttcccagcccaaagctgtgttcttaatgagggattctttctgtccctga
aactgggcagaagatgctgggttctctgtgttctgtttcacaaattgctg
cttgtctctagaattctttactgccttcatggtttcttttcccttggtag
catgacacatggtggtgacctcaaagaaccaggccagcgtgtttatatag
tgagttccaggccaggagaacattataagatcttggggagggggaggggt

gaattcactttctgattttgatgtattgagttcttttcttgcctcttctt
acccatagatgtataattcgggtctgctgtattctttcaaaggaagaact
ggcagggcagttgctgttacttaggataactatgtaatctctttgacttt
ctcttgttgggcaaactgcccagtgaatatcaatttttttagagctacaa
atatggttttaatagattcacagattttaaattattataattcagggcac
gtctctcccagggcgagcaaataactcataacaatccatgtagatgcaaa
ggagatgacaattgatcaatctgcatgtgagtacattgacagagttactg
ctcctcttttctctccaaaccctccccacaacactcagacaatttcacat
ggaaaaaatgcctgtctatgggagttcaaattagtcataatacccacttt
ggggactgaagaacacttactgtaaatcagccactcagaaaccacacttg
acatattttggttataatataactgtaagttgcataatattgtacgtatt
gattggctcttgagattgtaatggaaagcaactgccatacattgaaagtg
accaaccacaaggcaggaaaattgttcctgaagattccacaaacagtcat
ttttcttatactctaaacctccttgtcctctacacagtatattctaacac
acacttaaggctctatttttttttaaaggctgaatttttaccatattggc
ctgttaacctcaaattgtcacctgttcacctcactcagactaaaagagtt
ctagcatggtaaactgatttcttctttaatggagcagtgacctgtgtctg
aattagagaaagaacaaatcacacacacacacacacacacacacacacac
acacacacacacaaatacctaactaggtaacgattacagaatgactgagg
aagttaaagcaactgtaaaccataataaaatctaccttctctggtatttc
tttattcagttcctttgttgtcaacataaagtaaatggagaatttagttt
gtggcctactatccttgtagttgttgcaagtggtcttcttaccttcccca
ctcagggaagaacatgcttcctctgctccttaaagtcttttcccagaacc
acacctacctcataaagagacccgaaagaaacct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_84286765_84287664
seq2: B6Ng01-062E11.b_48_947 (reverse)

seq1  ACCCCT-CCCCTCCCCAAGATCTTATAATGTTCTCCTGGCCTGGAACTCA  49
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTCCCCCTCCCCAAGATCTTATAATGTTCTCCTGGCCTGGAACTCA  50

seq1  CTATATAAACCCTGCTGGCCTGGTTCTTTGAGGTCACCACCATGTGTCAT  99
      |||||||||| | |||||||||||||||||||||||||||||||||||||
seq2  CTATATAAACAC-GCTGGCCTGGTTCTTTGAGGTCACCACCATGTGTCAT  99

seq1  GCTACCAAGGGAAAAGAAACCATGAAGGCAGTAAAGAATTCTAGAGACAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACCAAGGGAAAAGAAACCATGAAGGCAGTAAAGAATTCTAGAGACAA  149

seq1  GCAGCAATTTGTGAAACAGAACACAGAGAACCCAGCATCTTCTGCCCAGT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAATTTGTGAAACAGAACACAGAGAACCCAGCATCTTCTGCCCAGT  199

seq1  TTCAGGGACAGAAAGAATCCCTCATTAAGAACACAGCTTTGGGCTGGGAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGGACAGAAAGAATCCCTCATTAAGAACACAGCTTTGGGCTGGGAA  249

seq1  GTCCCAGACTTCAGCAATAACAGTGTGGCAGCGTATGCCTTTAATCCTAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGACTTCAGCAATAACAGTGTGGCAGCGTATGCCTTTAATCCTAG  299

seq1  CATTCAGGAGGCAGAGGCAGGCCGATTTCTGAGTTGGAGGCCAGCCTGGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAGGAGGCAGAGGCAGGCCGATTTCTGAGTTGGAGGCCAGCCTGGT  349

seq1  CTACAAAGTGAGTACCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAAGTGAGTACCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCT  399

seq1  CGAAAAAAACAAACAGTGTCTTTGCTTAACATGAATGAGCCCTTCCAACT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAAAAAACAAACAGTGTCTTTGCTTAACATGAATGAGCCCTTCCAACT  449

seq1  CCAGCAGCATAGTAAGTTAAAAAATAGCTTTAAATGCTGACTAGTTTACT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGCATAGTAAGTTAAAAAATAGCTTTAAATGCTGACTAGTTTACT  499

seq1  AGGACTACAACATAAATTTACATAAAAAGCCATGAAGCCCTCCACCCTAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTACAACATAAATTTACATAAAAAGCCATGAAGCCCTCCACCCTAC  549

seq1  TCATGGCCTTGACTATAAAACAAGTGAGCTAGAATCTTTGGAACCCTTAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGCCTTGACTATAAAACAAGTGAGCTAGAATCTTTGGAACCCTTAA  599

seq1  GACAAAGCATAGCAATACTAATTTCTAAGAAAAATATTTTCAATAATTCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGCATAGCAATACTAATTTCTAAGAAAAATATTTTCAATAATTCC  649

seq1  TCAATTTTAAATACTTCCCATATAGAATTTAAATGGAAGAAAACGCTGAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTTAAATACTTCCCATATAGAATTTAAATGGAAGAAAACGCTGAA  699

seq1  CAAAACTTGAGACCTTGTTCAAATATCTTCTCCACACAAACAAGGAATCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTTGAGACCTTGTTCAAATATCTTCTCCACACAAACAAGGAATCA  749

seq1  GGCTTAAGGAATGGTTGGTCATTTGCCCAACATGACCCTACTATGTGTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTAAGGAATGGTTGGTCATTTGCCCAACATGACCCTACTATGTGTCT  799

seq1  GGAGGAGAGAAGGCAAACAGTGCTCCACCCTCTCTCTGCTACTGGCAACT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGAGAAGGCAAACAGTGCTCCACCCTCTCTCTGCTACTGGCAACT  849

seq1  TCTCTCCCTATCTTCGAATGGCAACTGTCCAGTTTCTCACATGGTGAATT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCCCTATCTTCGAATGGCAACTGTCCAGTTTCTCACATGGTGAATT  899

seq1  C  900
      |
seq2  C  900

seq1: chr4_84137828_84139028
seq2: B6Ng01-062E11.g_66_1249

seq1  GAATTCACTTTCTGATTTTGATGTATTGAGTTCTTTTCTTGCCTCTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTCTGATTTTGATGTATTGAGTTCTTTTCTTGCCTCTTCTT  50

seq1  ACCCATAGATGTATAATTCGGGTCTGCTGTATTCTTTCAAAGGAAGAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATAGATGTATAATTCGGGTCTGCTGTATTCTTTCAAAGGAAGAACT  100

seq1  GGCAGGGCAGTTGCTGTTACTTAGGATAACTATGTAATCTCTTTGACTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGGCAGTTGCTGTTACTTAGGATAACTATGTAATCTCTTTGACTTT  150

seq1  CTCTTGTTGGGCAAACTGCCCAGTGAATATCAATTTTTTTAGAGCTACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTTGGGCAAACTGCCCAGTGAATATCAATTTTTTTAGAGCTACAA  200

seq1  ATATGGTTTTAATAGATTCACAGATTTTAAATTATTATAATTCAGGGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGTTTTAATAGATTCACAGATTTTAAATTATTATAATTCAGGGCAC  250

seq1  GTCTCTCCCAGGGCGAGCAAATAACTCATAACAATCCATGTAGATGCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTCCCAGGGCGAGCAAATAACTCATAACAATCCATGTAGATGCAAA  300

seq1  GGAGATGACAATTGATCAATCTGCATGTGAGTACATTGACAGAGTTACTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGACAATTGATCAATCTGCATGTGAGTACATTGACAGAGTTACTG  350

seq1  CTCCTCTTTTCTCTCCAAACCCTCCCCACAACACTCAGACAATTTCACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCTTTTCTCTCCAAACCCTCCCCACAACACTCAGACAATTTCACAT  400

seq1  GGAAAAAATGCCTGTCTATGGGAGTTCAAATTAGTCATAATACCCACTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAATGCCTGTCTATGGGAGTTCAAATTAGTCATAATACCCACTTT  450

seq1  GGGGACTGAAGAACACTTACTGTAAATCAGCCACTCAGAAACCACACTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACTGAAGAACACTTACTGTAAATCAGCCACTCAGAAACCACACTTG  500

seq1  ACATATTTTGGTTATAATATAACTGTAAGTTGCATAATATTGTACGTATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTTTGGTTATAATATAACTGTAAGTTGCATAATATTGTACGTATT  550

seq1  GATTGGCTCTTGAGATTGTAATGGAAAGCAACTGCCATACATTGAAAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGCTCTTGAGATTGTAATGGAAAGCAACTGCCATACATTGAAAGTG  600

seq1  ACCAACCACAAGGCAGGAAAATTGTTCCTGAAGATTCCACAAACAGTCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACCACAAGGCAGGAAAATTGTTCCTGAAGATTCCACAAACAGTCAT  650

seq1  TTTTCTTATACTCTAAACCTCCTTGTCCTCTACACAGTATATTCTAACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTATACTCTAAACCTCCTTGTCCTCTACACAGTATATTCTAACAC  700

seq1  ACACTTAAGGCTCTATTTTTTTTTAAAGGCTGAATTTTTACCATATTGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTAAGGCTCTATTTTTTTTTAAAGGCTGAATTTTTACCATATTGGC  750

seq1  CTGTTAACCTCAAATTGTCACCTGTTCACCTCACTCAGACTAAAAGAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAACCTCAAATTGTCACCTGTTCACCTCACTCAGACTAAAAGAGTT  800

seq1  CTAGCATGGTAAACTGATTTCTTCTTTAATGGAGCAGTGACCTGTGTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCATGGTAAACTGATTTCTTCTTTAATGGAGCAGTGACCTGTGTCTG  850

seq1  AATTAGAGAAAGAACAAATCACACACACACACACACACACACACACACAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGAGAAAGAACAAATCACACACACACACACACACACACACACACAC  900

seq1  ACACACACACACAAATACCTAACTAGGTAACGATTTACAGAATGACTGAG  950
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ACACACACACACAAATACCTAACTAGGTAACGA-TTACAGAATGACTGAG  949

seq1  GAAGTTAAAGCAACTGTAAAACCATAATAAAATCTACC-TCTCTGGTATT  999
      ||||||||||||||||| |||||||||||||||||||| |||||||||||
seq2  GAAGTTAAAGCAACTGT-AAACCATAATAAAATCTACCTTCTCTGGTATT  998

seq1  TCTTTATTCAGTTCCTTTGTTGTTCAACATAAAGTAAATGGAGAATTTTT  1049
      |||||||||||||||||||||| ||||||||||||||||||||||  |||
seq2  TCTTTATTCAGTTCCTTTGTTG-TCAACATAAAGTAAATGGAGAA--TTT  1045

seq1  AGTTTGTGAGCTACTATCTGTGTAGTTGGTTTGCAGTGTGTGTCTTC-TA  1098
      ||||||||  ||||||||  ||||||||  |||||  ||| |||||| ||
seq2  AGTTTGTGGCCTACTATCCTTGTAGTTG--TTGCA-AGTG-GTCTTCTTA  1091

seq1  CCTTCCCACATCAGTGGAGACCATGCTTTCCTCTGCTCCCTTAAAGTCTC  1148
      |||||||   |||| | ||| ||||| |||||||||| ||||||||||| 
seq2  CCTTCCCCACTCAGGGAAGAACATGC-TTCCTCTGCT-CCTTAAAGTCT-  1138

seq1  TTTCCCACAGGAACACACACTACTCTAATAAAAGGACAGCCAGAAAGAAA  1198
      |||||  ||| | ||||| |||| || |||||  ||   || ||||||||
seq2  TTTCC--CAGAACCACAC-CTAC-CTCATAAAGAGA---CCCGAAAGAAA  1181

seq1  CCT  1201
      |||
seq2  CCT  1184