BAC Information

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BAC

Clone NameB6Ng01-062F08
Chromosome4 (Build37)
Map Location 27,257,938 - 27,398,316
singlet/doubletdoublet
Overlap genenone
Upstream geneManea, Bhmt-ps1, LOC665079, Gng2-ps1
Downstream geneLOC100040691, Tpm3-rs2, LOC100040842, LOC100040735, LOC230044
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-062F08.bB6Ng01-062F08.g
ACCDH882763DH882764
length1,1981,103
definitionDH882763|Mus musculus domesticus DNA, BAC clone: B6Ng01-062F08, 5' end.DH882764|Mus musculus domesticus DNA, BAC clone: B6Ng01-062F08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,257,938 - 27,259,170)(27,397,212 - 27,398,316)
sequence
gaattctttgttcagctctgagccccattttttaatggggttatttgatg
ttctggagtccaccttcttgagttctttatatatattggatattagtccc
ctatccgatttgggataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgatggtgtctaataaaagtttttggattgcataaattg
agctagcagagtgtaatagcagttcactttagaatttttttttgttttgc
aagtgttgatctatctggaaatctctggggcacaaacatagctcttctat
aatttttttctaggtaatctgacgtgggcatgattaatgatgttatggtg
tgctttcaaacaggagcctagcaaggctgtttttttagaggcacaagacg
cagttgactgagacaaacacagatacttatattcaaccattggattaaag
ccagtaaccattgtactcaaattaggcaaaagctagaagaagctaaggag
gagggcaaccctatttgaagactagcattctcaactaacctagacccccg
aggtctctcagacactgaaacaacaaacaggcagcataaacaagctagtc
taaggcccctgacagaggactgccttgtccggcctcagtaagagaagact
tgccaaaacctcaagagacttgaaacccaattgaatagggaggcatggaa
atggggcatctttttagagaaagagggaacgaggaactgtggaagggcag
accaagagaaaggcaatgactgaactgtaaatatataaaagtaaaagtag
taagaaaaacacgaaaagggaaaactaaagaaaaagaaaatctatgaact
ttttatagcagtttttatgactttgggtggaaagtccatgagctatctaa
agaacattagaatttttttctagtagacagacagagagagagagagagag
agagagagagagagagagagagagagtgtctcaagcagaagctgtcttaa
acagacaacacagccagacttttctacagagaagctccttaaggacctcc
tcttgagcaaacacagctccatcttggcccaatttcatttcatggttgta
gtaacacttcagacaccccttctctagaaccctctcaggcagctgatcat
gtcatcttggcaggcatgctatctatggacatgatgattcatgcagtc
gaattcacttttctcactaaattacaaggtctaaactgctcccaaatatc
tttggcttatcatttttagttgtaaatgtcctataggccctaatacatgc
tgattaactgtcaaggaagcaaaaacaaagttagagttacctattatgta
ataaaaaataatgtcagaagtatattatttacatgtatgatttttttaaa
caagaaagcacaataaaaggtaacgtggaaacccaaatgtcactatgaaa
acaccattagacagcaaacactaaaagacaattggaactttctagtctga
gttcaaaattcattaaaaaagggtaaacaaatattgtttataaaagtcca
atgagatatactaacactgattttctttattacttatgagaaataaagat
aactacacaaaaaataaaactactgaatgagctttagcctatattgaata
gtagagccataatttaatgacagaggggatctagtaattctcttctgatg
tttggggtcatatttacttctgttagtgatttgtctgcatatatcagctg
gaactctgggaaacaagatttgtacagaatctcagcaaagagccatctaa
gaagtatgtaagtagctataaggatagggaccatttactcacaattacat
actaagcttctaacatagacagtaatggataggagaagatatggacattt
atttacactacttaaaatgttagaaaatcaaagaacttgaactaagcaac
catttgctggaaatgggataaagaagttaaaattatgtcacatatcagtt
tgaccagatcattgataaaaccacaagtatctttgctttaatcagttaaa
taggttatctttttctaagttcattaaggttaattgtttacttaatagac
aaacataattaattagggtaggtagatgttatttaaaatgactttttttc
ttcacataactactttattcagtagtataggtaaaaaaagcaaacaaatt
aaaactctacatattaacatcaactagcaaactttacattctgatggtca
gtatcagcatgcatcggcctttggtatttcataagtaacctcatcaagtg
ttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_27257938_27259170
seq2: B6Ng01-062F08.b_47_1244

seq1  GAATTCTTTGTTCAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTCAGCTCTGAGCCCCATTTTTTAATGGGGTTATTTGATG  50

seq1  TTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAGTCCACCTTCTTGAGTTCTTTATATATATTGGATATTAGTCCC  100

seq1  CTATCCGATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCGATTTGGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCT  150

seq1  TTTTGTCTTATTGATGGTGTCTAATAAAAGTTTTTGGATTGCATAAATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTTATTGATGGTGTCTAATAAAAGTTTTTGGATTGCATAAATTG  200

seq1  AGCTAGCAGAGTGTAATAGCAGTTCACTTTAGAATTTTTTTTTGTTTTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGCAGAGTGTAATAGCAGTTCACTTTAGAATTTTTTTTTGTTTTGC  250

seq1  AAGTGTTGATCTATCTGGAAATCTCTGGGGCACAAACATAGCTCTTCTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTGATCTATCTGGAAATCTCTGGGGCACAAACATAGCTCTTCTAT  300

seq1  AATTTTTTTCTAGGTAATCTGACGTGGGCATGATTAATGATGTTATGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTTTCTAGGTAATCTGACGTGGGCATGATTAATGATGTTATGGTG  350

seq1  TGCTTTCAAACAGGAGCCTAGCAAGGCTGTTTTTTTAGAGGCACAAGACG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCAAACAGGAGCCTAGCAAGGCTGTTTTTTTAGAGGCACAAGACG  400

seq1  CAGTTGACTGAGACAAACACAGATACTTATATTCAACCATTGGATTAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGACTGAGACAAACACAGATACTTATATTCAACCATTGGATTAAAG  450

seq1  CCAGTAACCATTGTACTCAAATTAGGCAAAAGCTAGAAGAAGCTAAGGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTAACCATTGTACTCAAATTAGGCAAAAGCTAGAAGAAGCTAAGGAG  500

seq1  GAGGGCAACCCTATTTGAAGACTAGCATTCTCAACTAACCTAGACCCCCG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGCAACCCTATTTGAAGACTAGCATTCTCAACTAACCTAGACCCCCG  550

seq1  AGGTCTCTCAGACACTGAAACAACAAACAGGCAGCATAAACAAGCTAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCTCTCAGACACTGAAACAACAAACAGGCAGCATAAACAAGCTAGTC  600

seq1  TAAGGCCCCTGACAGAGGACTGCCTTGTCCGGCCTCAGTAAGAGAAGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCCCCTGACAGAGGACTGCCTTGTCCGGCCTCAGTAAGAGAAGACT  650

seq1  TGCCAAAACCTCAAGAGACTTGAAACCCAATTGAATAGGGAGGCATGGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAAACCTCAAGAGACTTGAAACCCAATTGAATAGGGAGGCATGGAA  700

seq1  ATGGGGCATCTTTTTAGAGAAAGAGGGAACGAGGAACTGTGGAAGGGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGCATCTTTTTAGAGAAAGAGGGAACGAGGAACTGTGGAAGGGCAG  750

seq1  ACCAAGAGAAAGGCAATGACTGAACTGTAAATATATAAAAGTAAAAGTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGAGAAAGGCAATGACTGAACTGTAAATATATAAAAGTAAAAGTAG  800

seq1  TAAGAAAAACACGAAAAGGGAAAACTAAAGAAAAAAGAAAATCTATGAAC  850
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TAAGAAAAACACGAAAAGGGAAAACTAAAG-AAAAAGAAAATCTATGAAC  849

seq1  TTTTTATAGCAGTTTTTATGACTTTGGGTGGAAAGTCCATGAGCTATCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATAGCAGTTTTTATGACTTTGGGTGGAAAGTCCATGAGCTATCTA  899

seq1  AAGAACATTTAGAATTTTTTTCTAGTAAGACAGACAGAGAGAGAGAGAGA  950
      ||||||| |||||||||||||||||| |||||||||||||||||||||||
seq2  AAGAACA-TTAGAATTTTTTTCTAGT-AGACAGACAGAGAGAGAGAGAGA  947

seq1  GAGAGAGAGAGAGAGAGAGAGAGAGAGAGGTGTCTCAAGCAGAAAGCTGT  1000
      |||||||||||||||||||||||||||| ||||||||||||| |||||||
seq2  GAGAGAGAGAGAGAGAGAGAGAGAGAGA-GTGTCTCAAGCAG-AAGCTGT  995

seq1  CTTAAACAGACAACACAGCCAAGACTTTTCTACAGAG-AGCTCTTTAGGG  1049
      |||||||||||||||||||| |||||||||||||||| ||||| ||| ||
seq2  CTTAAACAGACAACACAGCC-AGACTTTTCTACAGAGAAGCTCCTTAAGG  1044

seq1  ACCT-CTCTTGAGCAAAACACAGGCTTCCATCTTGGGCCCACAATTTCAT  1098
      |||| ||||||||| ||||||||   ||||||||||   | |||||||||
seq2  ACCTCCTCTTGAGC-AAACACAG--CTCCATCTTGG---CCCAATTTCAT  1088

seq1  TTCATGTTGTTTAGTTTACCACTCCAAGACACCCCTTCTCTTAGAACCCC  1148
      |||||| | | |||  || |||| | |||||||||||||| ||||| |||
seq2  TTCATGGT-TGTAG--TAACACTTC-AGACACCCCTTCTC-TAGAA-CCC  1132

seq1  TCTCCAAGCCAAGGCTGATTCATGTCATCCTTGGGCCAAGGTGCATGGCT  1198
      ||||  || ||  ||||| ||||||||| |||||  ||    |||| |||
seq2  TCTC--AGGCA--GCTGA-TCATGTCAT-CTTGG--CA---GGCAT-GCT  1170

seq1  AAGTGCTTATGTAGCATGTATGTATTCATGCAGTC  1233
      |      |||| | |||| ||| ||||||||||||
seq2  A----TCTATGGA-CATG-ATG-ATTCATGCAGTC  1198

seq1: chr4_27397212_27398316
seq2: B6Ng01-062F08.g_67_1169 (reverse)

seq1  AAACAC-TGATGAGTTGACTTATGAAATAC--AAAGACGATGCATGCTGA  47
      |||||| ||||||| | |||||||||||||  || | |||||||||||||
seq2  AAACACTTGATGAGGTTACTTATGAAATACCAAAGGCCGATGCATGCTGA  50

seq1  TACTGACCATCAGAATGTAAAGTTTGCTAGTTGATGTTAATATGTTAGAG  97
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TACTGACCATCAGAATGTAAAGTTTGCTAGTTGATGTTAATATG-TAGAG  99

seq1  TTTTAATTTTGTTTTGCTTTTTTTTACCTATACTACTGAATAAAGTAGTT  147
      |||||||||   ||||| ||||||||||||||||||||||||||||||||
seq2  TTTTAATTT--GTTTGC-TTTTTTTACCTATACTACTGAATAAAGTAGTT  146

seq1  ATGTGAAG-AAAAAAGTCATTTTTAAATAACATCTACCTACCCTAATTAA  196
      |||||||| |||||||||| ||||||||||||||||||||||||||||||
seq2  ATGTGAAGAAAAAAAGTCA-TTTTAAATAACATCTACCTACCCTAATTAA  195

seq1  TTATGTTTTGTCTATTAAGTAAACAATTAACCTTAATGAACTTAGAAAAA  246
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATG-TTTGTCTATTAAGTAAACAATTAACCTTAATGAACTTAGAAAAA  244

seq1  GATAACCTATTTAACTGATTAAAGCAAAGATACTTGTGGTTTTATCAATG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACCTATTTAACTGATTAAAGCAAAGATACTTGTGGTTTTATCAATG  294

seq1  ATCTGGTCAAACTGATATGTGACATAATTTTAACTTCTTTATCCCATTTC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGTCAAACTGATATGTGACATAATTTTAACTTCTTTATCCCATTTC  344

seq1  CAGCAAATGGTTGCTTAGTTCAAGTTCTTTGATTTTCTAACATTTTAAGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAATGGTTGCTTAGTTCAAGTTCTTTGATTTTCTAACATTTTAAGT  394

seq1  AGTGTAAATAAATGTCCATATCTTCTCCTATCCATTACTGTCTATGTTAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAAATAAATGTCCATATCTTCTCCTATCCATTACTGTCTATGTTAG  444

seq1  AAGCTTAGTATGTAATTGTGAGTAAATGGTCCCTATCCTTATAGCTACTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTAGTATGTAATTGTGAGTAAATGGTCCCTATCCTTATAGCTACTT  494

seq1  ACATACTTCTTAGATGGCTCTTTGCTGAGATTCTGTACAAATCTTGTTTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACTTCTTAGATGGCTCTTTGCTGAGATTCTGTACAAATCTTGTTTC  544

seq1  CCAGAGTTCCAGCTGATATATGCAGACAAATCACTAACAGAAGTAAATAT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGTTCCAGCTGATATATGCAGACAAATCACTAACAGAAGTAAATAT  594

seq1  GACCCCAAACATCAGAAGAGAATTACTAGATCCCCTCTGTCATTAAATTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCCAAACATCAGAAGAGAATTACTAGATCCCCTCTGTCATTAAATTA  644

seq1  TGGCTCTACTATTCAATATAGGCTAAAGCTCATTCAGTAGTTTTATTTTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTACTATTCAATATAGGCTAAAGCTCATTCAGTAGTTTTATTTTT  694

seq1  TGTGTAGTTATCTTTATTTCTCATAAGTAATAAAGAAAATCAGTGTTAGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAGTTATCTTTATTTCTCATAAGTAATAAAGAAAATCAGTGTTAGT  744

seq1  ATATCTCATTGGACTTTTATAAACAATATTTGTTTACCCTTTTTTAATGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTCATTGGACTTTTATAAACAATATTTGTTTACCCTTTTTTAATGA  794

seq1  ATTTTGAACTCAGACTAGAAAGTTCCAATTGTCTTTTAGTGTTTGCTGTC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGAACTCAGACTAGAAAGTTCCAATTGTCTTTTAGTGTTTGCTGTC  844

seq1  TAATGGTGTTTTCATAGTGACATTTGGGTTTCCACGTTACCTTTTATTGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGTGTTTTCATAGTGACATTTGGGTTTCCACGTTACCTTTTATTGT  894

seq1  GCTTTCTTGTTTAAAAAAATCATACATGTAAATAATATACTTCTGACATT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTTGTTTAAAAAAATCATACATGTAAATAATATACTTCTGACATT  944

seq1  ATTTTTTATTACATAATAGGTAACTCTAACTTTGTTTTTGCTTCCTTGAC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTATTACATAATAGGTAACTCTAACTTTGTTTTTGCTTCCTTGAC  994

seq1  AGTTAATCAGCATGTATTAGGGCCTATAGGACATTTACAACTAAAAATGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAATCAGCATGTATTAGGGCCTATAGGACATTTACAACTAAAAATGA  1044

seq1  TAAGCCAAAGATATTTGGGAGCAGTTTAGACCTTGTAATTTAGTGAGAAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCAAAGATATTTGGGAGCAGTTTAGACCTTGTAATTTAGTGAGAAA  1094

seq1  AGTGAATTC  1105
      |||||||||
seq2  AGTGAATTC  1103