BAC Information

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BAC

Clone NameB6Ng01-063M04
Chromosome4 (Build37)
Map Location 19,137,497 - 19,260,363
singlet/doubletdoublet
Overlap geneCngb3, LOC623122
Upstream geneLOC667251, LOC435772
Downstream geneCpne3, LOC100040306, 2410005O16Rik, Wwp1, Slc7a13, Atp6v0d2, LOC667282, Ttpa, LOC667301, EG664800, E130310K16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-063M04.bB6Ng01-063M04.g
ACCDH883754DH883755
length1,1421,072
definitionDH883754|Mus musculus domesticus DNA, BAC clone: B6Ng01-063M04, 5' end.DH883755|Mus musculus domesticus DNA, BAC clone: B6Ng01-063M04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(19,259,209 - 19,260,363)(19,137,497 - 19,138,581)
sequence
gaattctctgatatcggagaattgaatttctattgtaatcattctctccc
tttgatctccagcttttccggttccgcaagggaatcgagaagaggaacgc
tagagggcagtaaaggcgcattttacagacgcgagacttgcggcttttca
gaggtggttctgagccaaactccagctttgttgtgactgatttcttccgt
gcctggttcttagattaatccacgctttggttcaggagccccctgtgtag
agggagcagcgctgggcggatggttgaatgctgccagagagtactacaaa
caagttaagccttgtttggttcttgtggtgtgaacttatttgtatttttt
cagcaaagaatgagaattgttcggattatgagccattttttttaactttt
attttgtgatgttttcaaactttctatgatagtgtacatgagcaaaatta
ccccagtagaaacaataaataggataaaacttaaaaattatattgcttct
tttgggaaaatgagtttcatggatttattatagtgtgtttacatgaaaga
gtggaacacaggagagtcatggaaaggacaggccagggtctctggtggtc
tgcatttctctctttaaaacccagttatcctaatgtgtgttaattattga
cacttagaccctcactcagaaaatatggcccaggcgttcatgagaagaca
ggaaccaataggctggcatctttacagccagtggctcccttcactgttag
ttcaatctcaacataatgaaacaagtagtcattaagtgtaccagaaggga
taattgtgatgtctagaatttatgtagaactatacaatctagtgatcaaa
aactaggccagtactatggctgaatagcgtccaattttattgcttctaag
cagtcaagtttatagcaaattattaaaaaattgcgctcattaaagggaca
aaaggatggaaggcaatctgtgggctgcatttccctacagtgttaattag
gatggtgaacaacgatctgcaagaaactgagctactccaagtggtcagtg
gaagagaaaagggacgaggcatccaggacaggatccatgtgggttcttgg
gagcggagcctctgccttatgagtcatatccgaagccttgtg
gaattcagagagtaaaataaaaaaaaaaaaaaagaacttaagatgtgggc
agatggtctggaaagaaacaggagaaattaaaactaaggaaatgggtgga
cttgatcaaaacacattgcatacatgtgtaaactttatttttttaatatt
tatttttttactctatttgcaagattatttttcctgcttgaatatatgca
caccatatgagtgtagagccttaggaggccagaacagggtgtgggtctcc
cagaactgcagttagagatgtttgtaagctactatgtgagtacagagaat
tgaacttaagtactctagaagagcaaccagtgctcttaactgctgagcca
tctattcatccctgtacaaaatccttaaacaattagaagatatgaactga
tactatttgtgtgtgctaaattggagcatgtgatcttctatactggttag
cttctttctccagagcaccccgattcactgtctgtcatctggtactgaac
cacaacacatctataatacattccacttgggttttcttcctttaaagata
atttgatttgaggcatctgtcttcaggcttcccttagtcattactacact
gtcccatatcccctcccccacccccaccccccaaaaaaccttaaattatt
tcccctcagttttctctggatcgtattctaagctctagtgcctaagataa
atgttttattcctattcctaatgctttgctcatactggaaagatgtgctt
aacacagtttcttagtctatgccataaacagtattgctcctgcatcaatt
cacattgggggtatttctattctatttgtataaaatatgacttttaaatt
gaagtttatgtggcttaaggcataaatctgttttatcttcttaagattgt
acaatgcacacttcatctctgatccatttttgaaagggatgtgttttatg
acacatttttctatagctgatgatgatgttattacagctcccttatatac
atgcattagtatgttctctttatcttggagttatacagtgcttagcagac
tcagaaccatggaactcactag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_19259209_19260363
seq2: B6Ng01-063M04.b_45_1186 (reverse)

seq1  CACAAGGCTTTTCTGAATATGGACCCTCATAAGGCAGA-GCTTCGCTCCC  49
      ||||||||||    | |||||    ||||||||||||| ||| |||||||
seq2  CACAAGGCTT---CGGATATG---ACTCATAAGGCAGAGGCTCCGCTCCC  44

seq1  AGGAACCCACATGGGATCCTGTCCCTGGGATGCCTCTGTCCCTTTTCCTC  99
      | |||||||||| |||||||||||   ||||||||| ||||||||||   
seq2  AAGAACCCACAT-GGATCCTGTCC--TGGATGCCTC-GTCCCTTTTCTCT  90

seq1  TCCACTGA-CACTTGGAGTAGCTCAGTTTTCTTTGCAGATCGTTGTTCAC  148
      |||||||| ||||||||||||||||||||   ||||||||||||||||||
seq2  TCCACTGACCACTTGGAGTAGCTCAGTTT--CTTGCAGATCGTTGTTCAC  138

seq1  CATCCCTAATTAACACTGTAGGGAAATGCAGCCCACAGATTGCCTTCCAT  198
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAT-CCTAATTAACACTGTAGGGAAATGCAGCCCACAGATTGCCTTCCAT  187

seq1  CCCTTTTGTCCCTTTAATGAGCGCAATTTTTTTAATAATTTGCTATAAAC  248
       ||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  -CCTTTTGTCCCTTTAATGAGCGCAA-TTTTTTAATAATTTGCTATAAAC  235

seq1  TTGACTGCTTAGAAGCAATAAAATTGGACGCTATTCAGCCATAGTACTGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTGCTTAGAAGCAATAAAATTGGACGCTATTCAGCCATAGTACTGG  285

seq1  CCTAGTTTTTGATCACTAGATTGTATAGTTCTACATAAATTCTAGACATC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGTTTTTGATCACTAGATTGTATAGTTCTACATAAATTCTAGACATC  335

seq1  ACAATTATCCCTTCTGGTACACTTAATGACTACTTGTTTCATTATGTTGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTATCCCTTCTGGTACACTTAATGACTACTTGTTTCATTATGTTGA  385

seq1  GATTGAACTAACAGTGAAGGGAGCCACTGGCTGTAAAGATGCCAGCCTAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGAACTAACAGTGAAGGGAGCCACTGGCTGTAAAGATGCCAGCCTAT  435

seq1  TGGTTCCTGTCTTCTCATGAACGCCTGGGCCATATTTTCTGAGTGAGGGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCCTGTCTTCTCATGAACGCCTGGGCCATATTTTCTGAGTGAGGGT  485

seq1  CTAAGTGTCAATAATTAACACACATTAGGATAACTGGGTTTTAAAGAGAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGTGTCAATAATTAACACACATTAGGATAACTGGGTTTTAAAGAGAG  535

seq1  AAATGCAGACCACCAGAGACCCTGGCCTGTCCTTTCCATGACTCTCCTGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAGACCACCAGAGACCCTGGCCTGTCCTTTCCATGACTCTCCTGT  585

seq1  GTTCCACTCTTTCATGTAAACACACTATAATAAATCCATGAAACTCATTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCACTCTTTCATGTAAACACACTATAATAAATCCATGAAACTCATTT  635

seq1  TCCCAAAAGAAGCAATATAATTTTTAAGTTTTATCCTATTTATTGTTTCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAAAGAAGCAATATAATTTTTAAGTTTTATCCTATTTATTGTTTCT  685

seq1  ACTGGGGTAATTTTGCTCATGTACACTATCATAGAAAGTTTGAAAACATC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGGTAATTTTGCTCATGTACACTATCATAGAAAGTTTGAAAACATC  735

seq1  ACAAAATAAAAGTTAAAAAAAATGGCTCATAATCCGAACAATTCTCATTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATAAAAGTTAAAAAAAATGGCTCATAATCCGAACAATTCTCATTC  785

seq1  TTTGCTGAAAAAATACAAATAAGTTCACACCACAAGAACCAAACAAGGCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGAAAAAATACAAATAAGTTCACACCACAAGAACCAAACAAGGCT  835

seq1  TAACTTGTTTGTAGTACTCTCTGGCAGCATTCAACCATCCGCCCAGCGCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTGTTTGTAGTACTCTCTGGCAGCATTCAACCATCCGCCCAGCGCT  885

seq1  GCTCCCTCTACACAGGGGGCTCCTGAACCAAAGCGTGGATTAATCTAAGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCCTCTACACAGGGGGCTCCTGAACCAAAGCGTGGATTAATCTAAGA  935

seq1  ACCAGGCACGGAAGAAATCAGTCACAACAAAGCTGGAGTTTGGCTCAGAA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGCACGGAAGAAATCAGTCACAACAAAGCTGGAGTTTGGCTCAGAA  985

seq1  CCACCTCTGAAAAGCCGCAAGTCTCGCGTCTGTAAAATGCGCCTTTACTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCTGAAAAGCCGCAAGTCTCGCGTCTGTAAAATGCGCCTTTACTG  1035

seq1  CCCTCTAGCGTTCCTCTTCTCGATTCCCTTGCGGAACCGGAAAAGCTGGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTAGCGTTCCTCTTCTCGATTCCCTTGCGGAACCGGAAAAGCTGGA  1085

seq1  GATCAAAGGGAGAGAATGATTACAATAGAAATTCAATTCTCCGATATCAG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAAGGGAGAGAATGATTACAATAGAAATTCAATTCTCCGATATCAG  1135

seq1  AGAATTC  1155
      |||||||
seq2  AGAATTC  1142

seq1: chr4_19137497_19138581
seq2: B6Ng01-063M04.g_65_1136

seq1  GAATTCAGAGAGTAAAATAAAAAAAAAAAAAAAGAACTTAAGATGTGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGAGTAAAATAAAAAAAAAAAAAAAGAACTTAAGATGTGGGC  50

seq1  AGATGGTCTGGAAAGAAACAGGAGAAATTAAAACTAAGGAAATGGGTGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTCTGGAAAGAAACAGGAGAAATTAAAACTAAGGAAATGGGTGGA  100

seq1  CTTGATCAAAACACATTGCATACATGTGTAAACTTTATTTTTTTAATATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGATCAAAACACATTGCATACATGTGTAAACTTTATTTTTTTAATATT  150

seq1  TATTTTTTTACTCTATTTGCAAGATTATTTTTCCTGCTTGAATATATGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTTACTCTATTTGCAAGATTATTTTTCCTGCTTGAATATATGCA  200

seq1  CACCATATGAGTGTAGAGCCTTAGGAGGCCAGAACAGGGTGTGGGTCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATATGAGTGTAGAGCCTTAGGAGGCCAGAACAGGGTGTGGGTCTCC  250

seq1  CAGAACTGCAGTTAGAGATGTTTGTAAGCTACTATGTGAGTACAGAGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTGCAGTTAGAGATGTTTGTAAGCTACTATGTGAGTACAGAGAAT  300

seq1  TGAACTTAAGTACTCTAGAAGAGCAACCAGTGCTCTTAACTGCTGAGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTAAGTACTCTAGAAGAGCAACCAGTGCTCTTAACTGCTGAGCCA  350

seq1  TCTATTCATCCCTGTACAAAATCCTTAAACAATTAGAAGATATGAACTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTCATCCCTGTACAAAATCCTTAAACAATTAGAAGATATGAACTGA  400

seq1  TACTATTTGTGTGTGCTAAATTGGAGCATGTGATCTTCTATACTGGTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTTGTGTGTGCTAAATTGGAGCATGTGATCTTCTATACTGGTTAG  450

seq1  CTTCTTTCTCCAGAGCACCCCGATTCACTGTCTGTCATCTGGTACTGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTTCTCCAGAGCACCCCGATTCACTGTCTGTCATCTGGTACTGAAC  500

seq1  CACAACACATCTATAATACATTCCACTTGGGTTTTCTTCCTTTAAAGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACACATCTATAATACATTCCACTTGGGTTTTCTTCCTTTAAAGATA  550

seq1  ATTTGATTTGAGGCATCTGTCTTCAGGCTTCCCTTAGTCATTACTACACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATTTGAGGCATCTGTCTTCAGGCTTCCCTTAGTCATTACTACACT  600

seq1  GTCCCATATCCCCTCCCCCACCCCCACCCCCCAAAAAACCTTAAATTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCATATCCCCTCCCCCACCCCCACCCCCCAAAAAACCTTAAATTATT  650

seq1  TCCCCTCAGTTTTCTCTGGATCGTATTCTAAGCTCTAGTGCCTAAGATAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCAGTTTTCTCTGGATCGTATTCTAAGCTCTAGTGCCTAAGATAA  700

seq1  ATGTTTTATTCCTATTCCTAATGCTTTGCTCATACTGGAAAGATGTGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTATTCCTATTCCTAATGCTTTGCTCATACTGGAAAGATGTGCTT  750

seq1  AACACAGTTTCTTAGTCTATGCCATAAACAGTATTGCTCCTGCATCAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGTTTCTTAGTCTATGCCATAAACAGTATTGCTCCTGCATCAATT  800

seq1  CACATTGGGGGTATTTCTATTCTATTTGTATAAAATATGACTTTTAAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTGGGGGTATTTCTATTCTATTTGTATAAAATATGACTTTTAAATT  850

seq1  GAAGTATTATGTGGCTTAAGGCATAAATCTGTTTTATCTTCTTAAGATTG  900
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGT-TTATGTGGCTTAAGGCATAAATCTGTTTTATCTTCTTAAGATTG  899

seq1  TACAATGCACACTTCATCTCTGATCCAATTTTTTGAAAGGGATGTGTTTT  950
      |||||||||||||||||||||||||||  |||||||||||||||||||||
seq2  TACAATGCACACTTCATCTCTGATCCA--TTTTTGAAAGGGATGTGTTTT  947

seq1  ATGACAACATTTTTCTATAGCTGATGGATGATGGTTATTAACAGCTCCCT  1000
      ||||| ||||||||||||||||||| |||||| |||||| ||||||||||
seq2  ATGAC-ACATTTTTCTATAGCTGAT-GATGAT-GTTATT-ACAGCTCCCT  993

seq1  TATATACAATGCAATAAGTATGTTCTCTTTATCCTGGAGTTATACAGTGC  1050
      ||||||| |||| || ||||||||||||||||| ||||||||||||||||
seq2  TATATAC-ATGC-ATTAGTATGTTCTCTTTATCTTGGAGTTATACAGTGC  1041

seq1  TTAGCAAGACTCAGAACACATGGGAAACTCACTAG  1085
      ||||| ||||||||||| |||||  ||||||||||
seq2  TTAGC-AGACTCAGAAC-CATGG--AACTCACTAG  1072