BAC Information

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BAC

Clone NameB6Ng01-064B08
Chromosome4 (Build37)
Map Location 62,718,346 - 62,920,946
singlet/doubletdoublet
Overlap geneZfp618, Ambp, Kif12, Col27a1
Upstream geneMup3, LOC100039345, OTTMUSG00000000231, Zfp37, Slc31a2, Fkbp15, Slc31a1, Cdc26, Prpf4, Rnf183, Wdr31, Bspry, Hdhd3, Alad, Pole3, 4933430I17Rik, Rgs3
Downstream geneOrm1, Orm-ps, Orm3, Orm2, Akna, Whrn, Atp6v1g1, 6330416G13Rik, LOC670833, 1700018C11Rik, LOC667451, Tnfsf15, Tnfsf8, Rpl17-ps, Tnc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064B08.bB6Ng01-064B08.g
ACCDH883978DH883979
length1,0211,109
definitionDH883978|Mus musculus domesticus DNA, BAC clone: B6Ng01-064B08, 5' end.DH883979|Mus musculus domesticus DNA, BAC clone: B6Ng01-064B08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,718,346 - 62,719,366)(62,919,841 - 62,920,946)
sequence
gaattcctcaagtggctgaacaaaaatgaaaagaaaaaaaaaaaaccctt
ttcctaattgaattaaatcttcgtctctgtcttttacagctgatctccaa
acacacaccggttctccacatgtttggttgggttttgtccatccaggaag
aatctttaagaatagaatctcaacttgtgaactgaaaccaaaatgaaaaa
aaaagagagaaaaaaagaaagaaagagagaaagagagaaatgctctctac
tccgatttctttctttttttttcttttttacattttctttttctttcttt
cttttttttttttttttttttttttcggttgctgctatgcctttaaaatt
ttggaactgtacccgtgcactaaatgtgacctccataacttttaaattaa
aaatttatgctggcttgaaatttatgaaatatttcagcatgaaagaaagc
ctttttccctcaggaaaattgagcaataaatcacagcgctgtggatttac
tgccctagagccagcgagagataggattttttttttttgcttcattctga
aaaaaaaaatgtaatcatataagacagcttagctgctgtcctcccactct
ctagaatttttaatttcagctgtttctgcttggatttatttccaatattc
ctgctcggcttttcaatttcctcagttattaaattttaattcagtgcatt
agcatttaaattaaaaaagggttttttttatcaaaattcttggccagccc
cccattcccgtaacacacgaattggcctgtttctgccatttgcacaaaat
gtggaaatgcacctattgtctttacaacttacatttgcacaaatttaaaa
aataaaatttctggggtttggaataatatttttctttcaagaaaaccctt
aataagaaatggaaaaaacatcttaactgcatctgggaagggaaaaggag
ggagggaggaaacaaaactagcctggccatgtctggaaggaatccggggg
ggaggatggagggagctggga
gaattcctgacctgaaccagatagctgtgtgtcctcaggcaagctctcag
catctctgagtcacagagtgggagacagagccaagcctgggtcaactgat
ctagtgttgggactgccttcctgactctgtgcaggcctggtcacaacagg
cagatccaggccctaaacagcatggtaggggtaggaatccccagtacact
gatgagagagagagagacagagacagagatagagacagagagacagacag
agagagacagagaaagagagagacagagacagaaagaaagggagagagag
acagagagagagacagacagagacagagagaaagagagagagagacacag
agagagagagacagacagacagagagaggcagagacagagacagaaagaa
agagagagagacagagagagagacagacagagacagagagaaagagagag
acacagagagagagagagagagagacagacagacagacagacagagacag
agagagacagagacagagagggagagagagagagcgcactagataagaag
aatcactatagcctctttctagactcaatgagagattctggctagcatgt
ggctcagccgtctgctgtgcgtaaccctgaaccagccgggccagaagtcc
tgccagcactagctaactgccaacattttatatttggaccttcttccaaa
attgcacaccccctttctagcatgagaggtgaggcaagggtgagaactgt
agattttcgctggaggaaaagggagttgatggggagaaaagagaccctgt
gggaaacgccctgcattatcatggtcttaggttcagatccagacttggct
ccctattttctgtgtgaccctggtcaagtgggcttgctttccctattagt
ggtaggtctgattaagatgaccttgcaggatggccgcaaagagcttaagc
caccaactgggatgggacccgaagaaaggttgtcttggtgacagtcacga
ggcctcacccaaaaggtctattttctaaagactcaaattccctttacata
atcatgggctttcttacagagtcaggaaccatatttttatgatatttgta
ccatttggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_62718346_62719366
seq2: B6Ng01-064B08.b_43_1063

seq1  GAATTCCTCAAGTGGCTGAACAAAAATGAAAAGAAAAAAAAAAAACCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCAAGTGGCTGAACAAAAATGAAAAGAAAAAAAAAAAACCCTT  50

seq1  TTCCTAATTGAATTAAATCTTCGTCTCTGTCTTTTACAGCTGATCTCCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTAATTGAATTAAATCTTCGTCTCTGTCTTTTACAGCTGATCTCCAA  100

seq1  ACACACACCGGTTCTCCACATGTTTGGTTGGGTTTTGTCCATCCAGGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACCGGTTCTCCACATGTTTGGTTGGGTTTTGTCCATCCAGGAAG  150

seq1  AATCTTTAAGAATAGAATCTCAACTTGTGAACTGAAACCAAAATGAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTAAGAATAGAATCTCAACTTGTGAACTGAAACCAAAATGAAAAA  200

seq1  AAAAGAGAGAAAAAAAGAAAGAAAGAGAGAAAGAGAGAAATGCTCTCTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGAGAAAAAAAGAAAGAAAGAGAGAAAGAGAGAAATGCTCTCTAC  250

seq1  TCCGATTTCTTTCTTTTTTTTTCTTTTTTACATTTTCTTTTTCTTTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGATTTCTTTCTTTTTTTTTCTTTTTTACATTTTCTTTTTCTTTCTTT  300

seq1  CTTTTTTTTTTTTTTTTTTTTTTTTCGGTTGCTGCTATGCCTTTAAGATT  350
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CTTTTTTTTTTTTTTTTTTTTTTTTCGGTTGCTGCTATGCCTTTAAAATT  350

seq1  TTGGAACTGTACCCGTGCACTAAATGTGACCTCCATAACTTTTAAATTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAACTGTACCCGTGCACTAAATGTGACCTCCATAACTTTTAAATTAA  400

seq1  GAATTTATGCTGGCTTGAAATTTATGAAATATTTCAGCATGAAAGAAAGC  450
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTATGCTGGCTTGAAATTTATGAAATATTTCAGCATGAAAGAAAGC  450

seq1  CTTTTTCCCTCAGGAAAATTGAGCAATAAATCACAGCGCTGTGGATTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTCCCTCAGGAAAATTGAGCAATAAATCACAGCGCTGTGGATTTAC  500

seq1  TGCCCTAGAGCCAGCGAGAGATAGGATTTTTTTTTTTTGCTTCATTCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTAGAGCCAGCGAGAGATAGGATTTTTTTTTTTTGCTTCATTCTGA  550

seq1  AAAAAAAAATGTAATCATATAAGACAGCTTAGCTGCTGTCCTCCCACTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAATGTAATCATATAAGACAGCTTAGCTGCTGTCCTCCCACTCT  600

seq1  CTAGAATTTTTAATTTCAGCTGTTTCTGCTTGGATTTATTTCCAATATTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAATTTTTAATTTCAGCTGTTTCTGCTTGGATTTATTTCCAATATTC  650

seq1  CTGCTCGGCTTTTCAATTTCCTCAGTTATTAAATTTTAATTCAGTGCATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCGGCTTTTCAATTTCCTCAGTTATTAAATTTTAATTCAGTGCATT  700

seq1  AGCATTTAAATTAAAAAAGGGTTTATTTTATCGAAATCGTTGGCCAG-CC  749
      |||||||||||||||||||||||| ||||||| ||||  |||||||| ||
seq2  AGCATTTAAATTAAAAAAGGGTTTTTTTTATCAAAATTCTTGGCCAGCCC  750

seq1  CCCATCCCCGTAGCACACGAATT-GCCTGTTTCTGCCATTTGCACAAAAT  798
      ||||| |||||| |||||||||| ||||||||||||||||||||||||||
seq2  CCCATTCCCGTAACACACGAATTGGCCTGTTTCTGCCATTTGCACAAAAT  800

seq1  GT-GAAATGCAGCTAATGTC-TTACAACTTACATTTGCACAAATTT-AGA  845
      || |||||||| ||| |||| ||||||||||||||||||||||||| | |
seq2  GTGGAAATGCACCTATTGTCTTTACAACTTACATTTGCACAAATTTAAAA  850

seq1  AATAAAATTTCT-GGGTTTGGAATAATATTTTCTTTCCAAGAAAACCCTT  894
      |||||||||||| |||||||||||||||||||  || |||||||||||||
seq2  AATAAAATTTCTGGGGTTTGGAATAATATTTTTCTTTCAAGAAAACCCTT  900

seq1  AATAAGAGAATGGAAAAGAACATCTTAACATGCATCTGGGAAGGG-AAAG  943
      ||||||| ||||||||| ||||||||||| ||||||||||||||| ||||
seq2  AATAAGA-AATGGAAAA-AACATCTTAAC-TGCATCTGGGAAGGGAAAAG  947

seq1  GAGGGAGGGAGGAAACCAAAACTAGCCTTGCCCAGGTACTGGAGAGAATC  993
      ||||||||||||||| ||||||||||| || ||| || |||||  |||||
seq2  GAGGGAGGGAGGAAA-CAAAACTAGCC-TGGCCATGT-CTGGAAGGAATC  994

seq1  TGGGGGTGAGGAATGGAGGGAGCTGGGA  1021
       ||||| |||| ||||||||||||||||
seq2  CGGGGGGGAGG-ATGGAGGGAGCTGGGA  1021

seq1: chr4_62919841_62920946
seq2: B6Ng01-064B08.g_71_1179 (reverse)

seq1  ACCAAATGGTACCAATATCATAAAAGTAGGTTTCCTTGACTCTGTTAGGA  50
      |||||||||||| |||||||||||| || | |||| |||||||| || ||
seq2  ACCAAATGGTACAAATATCATAAAAATATGGTTCC-TGACTCTG-TAAGA  48

seq1  AAGCCATTGATTCTGTAAGGGGAATCTGAGTCTCTAAGAGATAGACC-TC  99
      |||||  ||||| ||||| |||||| ||||||| ||  | ||||||| | 
seq2  AAGCCCATGATTATGTAAAGGGAATTTGAGTCTTTAGAAAATAGACCTTT  98

seq1  TGGGTGAGGCCTTGTGACTGTCACCAAGACAA-CTTTCTTCGGGTCCTAT  148
      |||||||||||| ||||||||||||||||||| |||||||||||||| ||
seq2  TGGGTGAGGCCTCGTGACTGTCACCAAGACAACCTTTCTTCGGGTCCCAT  148

seq1  CCCAGTTGGTGGCTT-AGCTCTTTGCTGCCATCCTGC-AGGTCATC-TAA  195
      ||||||||||||||| |||||||||| |||||||||| |||||||| |||
seq2  CCCAGTTGGTGGCTTAAGCTCTTTGCGGCCATCCTGCAAGGTCATCTTAA  198

seq1  TCAGACCTACCACTGACTAGGGAATGCAAG-CCACTTGACCAGGGTCACA  244
      |||||||||||||| | ||||||| ||||| |||||||||||||||||||
seq2  TCAGACCTACCACT-AATAGGGAAAGCAAGCCCACTTGACCAGGGTCACA  247

seq1  CAGAAAATAGGGAGCCAAGTCTGGATCTGAACCTAAGACCATTGATAATG  294
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CAGAAAATAGGGAGCCAAGTCTGGATCTGAACCTAAGACCA-TGATAATG  296

seq1  CAGGGCGTTTCCCACAGGGTCTCTTTTCTCCCCATCAACTCCCTTTTCCT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCGTTTCCCACAGGGTCTCTTTTCTCCCCATCAACTCCCTTTTCCT  346

seq1  CCAGCG-AAATCTACAGTTCTCACCCTTGCCTCACCTCTCATGCTAGAAA  393
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCGAAAATCTACAGTTCTCACCCTTGCCTCACCTCTCATGCTAGAAA  396

seq1  GGGGGTGTGCAATTTTGGAAGAAGGTCCAAATATAAAATGTTGGCAGTTA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTGTGCAATTTTGGAAGAAGGTCCAAATATAAAATGTTGGCAGTTA  446

seq1  GCTAGTGCTGGCAGGACTTCTGGCCCGGCTGGTTCAGGGTTACGCACAGC  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTGCTGGCAGGACTTCTGGCCCGGCTGGTTCAGGGTTACGCACAGC  496

seq1  AGACGGCTGAGCCACATGCTAGCCAGAATCTCTCATTGAGTCTAGAAAGA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACGGCTGAGCCACATGCTAGCCAGAATCTCTCATTGAGTCTAGAAAGA  546

seq1  GGCTATAGTGATTCTTCTTATCTAGTGCGCTCTCTCTCTCTCCCTCTCTG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATAGTGATTCTTCTTATCTAGTGCGCTCTCTCTCTCTCCCTCTCTG  596

seq1  TCTCTGTCTCTCTCTGTCTCTGTCTGTCTGTCTGTCTGTCTCTCTCTCTC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTCTCTCTCTGTCTCTGTCTGTCTGTCTGTCTGTCTCTCTCTCTC  646

seq1  TCTCTCTCTGTGTCTCTCTCTTTCTCTCTGTCTCTGTCTGTCTCTCTCTC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTGTGTCTCTCTCTTTCTCTCTGTCTCTGTCTGTCTCTCTCTC  696

seq1  TGTCTCTCTCTCTTTCTTTCTGTCTCTGTCTCTGCCTCTCTCTGTCTGTC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTCTCTCTTTCTTTCTGTCTCTGTCTCTGCCTCTCTCTGTCTGTC  746

seq1  TGTCTCTCTCTCTCTGTGTCTCTCTCTCTCTTTCTCTCTGTCTCTGTCTG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTCTCTCTCTGTGTCTCTCTCTCTCTTTCTCTCTGTCTCTGTCTG  796

seq1  TCTCTCTCTCTGTCTCTCTCTCCCTTTCTTTCTGTCTCTGTCTCTCTCTT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTGTCTCTCTCTCCCTTTCTTTCTGTCTCTGTCTCTCTCTT  846

seq1  TCTCTGTCTCTCTCTGTCTGTCTCTCTGTCTCTATCTCTGTCTCTGTCTC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGTCTCTCTCTGTCTGTCTCTCTGTCTCTATCTCTGTCTCTGTCTC  896

seq1  TCTCTCTCTCATCAGTGTACTGGGGATTCCTACCCCTACCATGCTGTTTA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCATCAGTGTACTGGGGATTCCTACCCCTACCATGCTGTTTA  946

seq1  GGGCCTGGATCTGCCTGTTGTGACCAGGCCTGCACAGAGTCAGGAAGGCA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTGGATCTGCCTGTTGTGACCAGGCCTGCACAGAGTCAGGAAGGCA  996

seq1  GTCCCAACACTAGATCAGTTGACCCAGGCTTGGCTCTGTCTCCCACTCTG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAACACTAGATCAGTTGACCCAGGCTTGGCTCTGTCTCCCACTCTG  1046

seq1  TGACTCAGAGATGCTGAGAGCTTGCCTGAGGACACACAGCTATCTGGTTC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCAGAGATGCTGAGAGCTTGCCTGAGGACACACAGCTATCTGGTTC  1096

seq1  AGGTCAGGAATTC  1106
      |||||||||||||
seq2  AGGTCAGGAATTC  1109