BAC Information

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BAC

Clone NameB6Ng01-064K20
Chromosome4 (Build37)
Map Location 8,054,672 - 8,190,335
singlet/doubletdoublet
Overlap geneCar8, LOC100039494
Upstream geneLOC666700
Downstream geneLOC100039505, LOC100039478, Rab2, EG666752, LOC666760, Chd7, LOC666782
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-064K20.bB6Ng01-064K20.g
ACCDH884389DH884390
length1,1191,021
definitionDH884389|Mus musculus domesticus DNA, BAC clone: B6Ng01-064K20, 5' end.DH884390|Mus musculus domesticus DNA, BAC clone: B6Ng01-064K20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(8,054,672 - 8,055,791)(8,189,295 - 8,190,335)
sequence
gaattccaatataatttgaaagcaattaaattttctccaagaaattgttc
tgtcgttcttaggaataaaccaagccaaaagaaagtgaaggaagcgtatg
aagcagacgtaggacttcagcatctctaaaaactttcctgagttctacca
aatgaagcttcggtgcgtgaaaaaagtttccactttcagaaatggaattt
ctgaaattccccacagcaccattaccaaatggacttgcctatatatcctg
agaggtacagccgctaggatgctgtattaaagcatctacataggatgcag
gatgagatttcccacttgaaatcctttcttttatattgtttttgtccttc
ttaaaaatgtgtgaagggtcaggcacaactctccctcactgcatcagaga
acaacagcactacctcactgcatgagtgacatacatggttccattcagaa
tggcaaaggaaatggtatagagaaggaaggacagaaaagttaacaataag
aagttatgcatgacctgagagccccaactcatttcataccttagcatttc
catagttctctatctttgtaaacaagatgaaataatctatttaagtaaca
taggttgtgtctgttgtttaaatatttcctatcttactatattccaagaa
aagtgtgtgtggacagagttcccaagaacacagattttctgagtgtcaat
ttatgtatgtaccttgctggtattacatttgtgaaattaagacttgagaa
acattaatcattccttactaattaaccacttctaattaattactttaaat
agagaaataaagtggaagaataagatttctgagtaattattgcaacaaag
taataactgatgttagactacttcagtgttcttttcattttagtaaatgt
ttcattttgcttgtattagttcatgctaattacaaagtaatggattccat
gctgacattgctgtatctgcatgcatagatttgaccccagctacccccat
ccctcttccttcctctactcctttttaccttcccatttcccaagaaggcc
tcattgactttctagccttcctcttgcccccaaattccccatatgccaaa
cttgacctcagaaggccca

gaattcttctgttcataggcagaacattattggattagctggaccacacc
ctgtaattcattctaataagtccttctaaataaacagagggatatttatt
ctataagttttgttattctagagaaccctagctaatacagtgatcattta
gtatagtatttatatcatcctaaaatttctttcccaatactgatttgtct
aaattaatttcatccattttgtttctggatcacaaaactagaattttttc
cagacagaaataacatacatgaattttttcagttgtgatgactttaagag
ataatctaccttacaattttcttcattgcagggcatgattctgtactgta
gatgttgttaaatgtgttaataaagcacaagtctgctagaaaaaaacaga
tggcaaaatagtcattactgaaatgcttggtgttttcattgggttatgga
tacctggggtaactgcagctataacgacctaatgtagagctcttaacggg
aacatatcagaatggaaatggaaaccaccagcatagatgagaagagaaag
aactttgccaaaatcctagagtatgcatttctaccagaaaagcaacgtgt
aaactgggaaatgagcccagcatataaaaacacacttaaaacttgttcag
ctattggatatccatcaagtttgagtacctcatgacctctgaacatcgcc
gttaaaaggaaaggatctgggaccttgggagagggaagatttccatgaaa
gcatgaagacctgagtttagatctccactattcacacacaaaaaaaaaac
tgcaggaagtgatgcaggtctgtaacactaatgttggcagaggtcatgta
agctgagacatgttgatgcccagagatcactggtactggttagcacttgg
ttcagtgagagagctgtctcaaaagtagtaggccatcagatgactcagta
aatagacgagcatatttatagttctttttcacagcagatactaggcactc
atgatgtgatctctattgtcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_8054672_8055791
seq2: B6Ng01-064K20.b_49_1167

seq1  GAATTCCAATATAATTTGAAAGCAATTAAATTTTCTCCAAGAAATTGTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATATAATTTGAAAGCAATTAAATTTTCTCCAAGAAATTGTTC  50

seq1  TGTCGTTCTTAGGAATAAACCAAGCCAAAAGAAAGTGAAGGAAGCGTATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCGTTCTTAGGAATAAACCAAGCCAAAAGAAAGTGAAGGAAGCGTATG  100

seq1  AAGCAGACGTAGGACTTCAGCATCTCTAAAAACTTTCCTGAGTTCTACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGACGTAGGACTTCAGCATCTCTAAAAACTTTCCTGAGTTCTACCA  150

seq1  AATGAAGCTTCGGTGCGTGAAAAAAGTTTCCACTTTCAGAAATGGAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGCTTCGGTGCGTGAAAAAAGTTTCCACTTTCAGAAATGGAATTT  200

seq1  CTGAAATTCCCCACAGCACCATTACCAAATGGACTTGCCTATATATCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATTCCCCACAGCACCATTACCAAATGGACTTGCCTATATATCCTG  250

seq1  AGAGGTACAGCCGCTAGGATGCTGTATTAAAGCATCTACATAGGATGCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTACAGCCGCTAGGATGCTGTATTAAAGCATCTACATAGGATGCAG  300

seq1  GATGAGATTTCCCACTTGAAATCCTTTCTTTTATATTGTTTTTGTCCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGATTTCCCACTTGAAATCCTTTCTTTTATATTGTTTTTGTCCTTC  350

seq1  TTAAAAATGTGTGAAGGGTCAGGCACAACTCTCCCTCACTGCATCAGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATGTGTGAAGGGTCAGGCACAACTCTCCCTCACTGCATCAGAGA  400

seq1  ACAACAGCACTACCTCACTGCATGAGTGACATACATGGTTCCATTCAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAGCACTACCTCACTGCATGAGTGACATACATGGTTCCATTCAGAA  450

seq1  TGGCAAAGGAAATGGTATAGAGAAGGAAGGACAGAAAAGTTAACAATAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAAGGAAATGGTATAGAGAAGGAAGGACAGAAAAGTTAACAATAAG  500

seq1  AAGTTATGCATGACCTGAGAGCCCCAACTCATTTCATACCTTAGCATTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATGCATGACCTGAGAGCCCCAACTCATTTCATACCTTAGCATTTC  550

seq1  CATAGTTCTCTATCTTTGTAAACAAGATGAAATAATCTATTTAAGTAACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTTCTCTATCTTTGTAAACAAGATGAAATAATCTATTTAAGTAACA  600

seq1  TAGGTTGTGTCTGTTGTTTAAATATTTCCTATCTTACTATATTCCAAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTGTGTCTGTTGTTTAAATATTTCCTATCTTACTATATTCCAAGAA  650

seq1  AAGTGTGTGTGGACAGAGTTCCCAAGAACACAGATTTTCTGAGTGTCAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGTGTGGACAGAGTTCCCAAGAACACAGATTTTCTGAGTGTCAAT  700

seq1  TTATGTATGTACCTTGCTGGTATTACATTTGTGAAATTAAGACTTGAGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTATGTACCTTGCTGGTATTACATTTGTGAAATTAAGACTTGAGAA  750

seq1  ACATTAATCATTCCTTACTAATTAACCACTTCTAATTAATTACTTTAAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAATCATTCCTTACTAATTAACCACTTCTAATTAATTACTTTAAAT  800

seq1  AGAGAAATAAAGTGGAAGAATAAGATTTCTGAGTAATTATTGCAACAAGG  850
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  AGAGAAATAAAGTGGAAGAATAAGATTTCTGAGTAATTATTGCAACAAAG  850

seq1  TAATAACTGATGTTAGACTACTTCAGTGTTCTTTTCATTTTAGTAAATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAACTGATGTTAGACTACTTCAGTGTTCTTTTCATTTTAGTAAATGT  900

seq1  TTCATTTTGCTTGTATTAGTTCATGCTAATTACAAAGTAATGGATTCCAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTGCTTGTATTAGTTCATGCTAATTACAAAGTAATGGATTCCAT  950

seq1  GCTGACATTGCTGTATCTGCATGCAATAGATTTGACCCCAGCTACCCCCA  1000
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GCTGACATTGCTGTATCTGCATGC-ATAGATTTGACCCCAGCTACCCCCA  999

seq1  TCACTCTTCCTTCTCTTACTTCTTTTTACCTTCCACATTCCCAAG-AGGC  1049
      || ||||||||||   |||| |||||||||||||   |||||||| ||||
seq2  TCCCTCTTCCTTCCTCTACTCCTTTTTACCTTCCCATTTCCCAAGAAGGC  1049

seq1  TTCATTGACTTTCCTAGCCTTCCTCTTGCCCCCAGATTCCACATATGCAA  1099
       ||||||||||| ||||||||||||||||||||| ||||| ||||||| |
seq2  CTCATTGACTTT-CTAGCCTTCCTCTTGCCCCCAAATTCCCCATATGCCA  1098

seq1  CACTTGACTTCAGGAGGCCCA  1120
       ||||||| |||| |||||||
seq2  AACTTGACCTCAGAAGGCCCA  1119


seq1: chr4_8189295_8190335
seq2: B6Ng01-064K20.g_69_1089 (reverse)

seq1  GGACAATAGAAGATTCAACATCATTGAGTGCCTAGGTATCTGCCTGTGAA  50
      ||||||||| ||||   |||||| |||||||||| ||||||| |||||||
seq2  GGACAATAG-AGAT--CACATCA-TGAGTGCCTA-GTATCTG-CTGTGAA  44

seq1  AAAGAAACTAATTAAATATGCCTCGTCTATATTAACTGAGTCATCTTGAT  100
      |||| |||||  |||||||| ||||||  |||| ||||||||||| ||||
seq2  AAAG-AACTA--TAAATATG-CTCGTC--TATTTACTGAGTCATC-TGAT  87

seq1  GGCCCTACCTTACTTTTTGAGACAAGCTCTCTCACTGAACCAAGTGCTAA  150
      || |||||  ||| ||||||||| ||||||||||||||||||||||||||
seq2  GG-CCTAC--TAC-TTTTGAGAC-AGCTCTCTCACTGAACCAAGTGCTAA  132

seq1  CCCAGTAACCAGTGATCTCTGGGCATCAACATGTCTCAGCTTACATGACC  200
       ||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  -CCAGT-ACCAGTGATCTCTGGGCATCAACATGTCTCAGCTTACATGACC  180

seq1  TCTGCCAACATTAGTGTTACAGACCTGCATCACTTCCTGCAGTTTTTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCAACATTAGTGTTACAGACCTGCATCACTTCCTGCAGTTTTTTTT  230

seq1  TTGTGTGTGAATAGTGGAGATCTAAACTCAGGTCTTCATGCTTTCATGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGTGAATAGTGGAGATCTAAACTCAGGTCTTCATGCTTTCATGGA  280

seq1  AATCTTCCCTCTCCCAAGGTCCCAGATCCTTTCCTTTTAACGGCGATGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCCCTCTCCCAAGGTCCCAGATCCTTTCCTTTTAACGGCGATGTT  330

seq1  CAGAGGTCATGAGGTACTCAAACTTGATGGATATCCAATAGCTGAACAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTCATGAGGTACTCAAACTTGATGGATATCCAATAGCTGAACAAG  380

seq1  TTTTAAGTGTGTTTTTATATGCTGGGCTCATTTCCCAGTTTACACGTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGTGTGTTTTTATATGCTGGGCTCATTTCCCAGTTTACACGTTGC  430

seq1  TTTTCTGGTAGAAATGCATACTCTAGGATTTTGGCAAAGTTCTTTCTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGGTAGAAATGCATACTCTAGGATTTTGGCAAAGTTCTTTCTCTT  480

seq1  CTCATCTATGCTGGTGGTTTCCATTTCCATTCTGATATGTTCCCGTTAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTATGCTGGTGGTTTCCATTTCCATTCTGATATGTTCCCGTTAAG  530

seq1  AGCTCTACATTAGGTCGTTATAGCTGCAGTTACCCCAGGTATCCATAACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTACATTAGGTCGTTATAGCTGCAGTTACCCCAGGTATCCATAACC  580

seq1  CAATGAAAACACCAAGCATTTCAGTAATGACTATTTTGCCATCTGTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAAAACACCAAGCATTTCAGTAATGACTATTTTGCCATCTGTTTTT  630

seq1  TTCTAGCAGACTTGTGCTTTATTAACACATTTAACAACATCTACAGTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAGCAGACTTGTGCTTTATTAACACATTTAACAACATCTACAGTACA  680

seq1  GAATCATGCCCTGCAATGAAGAAAATTGTAAGGTAGATTATCTCTTAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCATGCCCTGCAATGAAGAAAATTGTAAGGTAGATTATCTCTTAAAG  730

seq1  TCATCACAACTGAAAAAATTCATGTATGTTATTTCTGTCTGGAAAAAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCACAACTGAAAAAATTCATGTATGTTATTTCTGTCTGGAAAAAATT  780

seq1  CTAGTTTTGTGATCCAGAAACAAAATGGATGAAATTAATTTAGACAAATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTTTGTGATCCAGAAACAAAATGGATGAAATTAATTTAGACAAATC  830

seq1  AGTATTGGGAAAGAAATTTTAGGATGATATAAATACTATACTAAATGATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTGGGAAAGAAATTTTAGGATGATATAAATACTATACTAAATGATC  880

seq1  ACTGTATTAGCTAGGGTTCTCTAGAATAACAAAACTTATAGAATAAATAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTATTAGCTAGGGTTCTCTAGAATAACAAAACTTATAGAATAAATAT  930

seq1  CCCTCTGTTTATTTAGAAGGACTTATTAGAATGAATTACAGGGTGTGGTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTGTTTATTTAGAAGGACTTATTAGAATGAATTACAGGGTGTGGTC  980

seq1  CAGCTAATCCAATAATGTTCTGCCTATGAACAGAAGAATTC  1041
      |||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAATCCAATAATGTTCTGCCTATGAACAGAAGAATTC  1021


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