BAC Information

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BAC

Clone NameB6Ng01-065I23
Chromosome9 (Build37)4 (Build37)
Map Location 98,243,245 - 98,243,93740,237,588 - 40,237,986
singlet/doubletsingletsinglet
Overlap geneNmnat3
Upstream geneTrim42, Clstn2, LOC667298
Downstream geneRbp1, Rbp2, 4930579K19Rik, Copb2, Mrps22, EG623166, EG623186, 2410012M07Rik, LOC546155, LOC100040370, 7420426K07Rik, LOC100040380, LOC667347, Foxl2os, Foxl2, Faim, Gm1123, Pik3cb, LOC100040442, LOC100040757, EG623459, Cep70, D9Ertd280e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-065I23.bB6Ng01-065I23.g
ACCDH884998DH884999
length1,074412
definitionDH884998|Mus musculus domesticus DNA, BAC clone: B6Ng01-065I23, 5' end.DH884999|Mus musculus domesticus DNA, BAC clone: B6Ng01-065I23, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(98,243,245 - 98,243,937)(40,237,588 - 40,237,986)
sequence
gaattccaaaacactttcttctcgattttatattactagagcagaggcaa
gggatattgttacggcttgcaaagcctgtgcccccctattgcctcaggtg
agtgtgggagtaaaccctcgcggcctgcttcccctccacatttggcaaat
ggatgtgactcatttttcagaatttggtaaactgcaatttgttcatgttt
ctgtagatacagcctctggggtgttgtttgcctccctgcatactggtgaa
aaggcacgccatgtcattgcccattgctttgaggcatggggtgcatgggg
tcagcccagagagcttaagactgataatggacctgcttatacttcagctt
cttttgtttccttttgtaaaatgatgggtgtcagcttggtgcatgtgggg
agcgggtgtggcggcagtcccaaaggcgccagagactgcagctaagtcat
atgacttgcacctgacttcctcatataagacacaaacatcttgagtgctg
cgcaggtgtaccaggatactggtgaatccattttgatggagatatgcccc
tgctgccctgattagctgaagctgcgtgcctggtgagggggcgtggcctg
cggtgcgtggatgagagagagtataaaaaggagtgagaggcccagggttc
ggggggagatatataaacagcgggagatataaaaacaagggagatataaa
caagggagatataaaaacaagggaaatatagagaaagaggaacaggactg
aataaatgtgtgcagaaggatcctgtagcagcgtcgttcttcctggccag
ttgggctcgcgtaagagttggtgccggaaatccgggaagaaaagacccgg
gacgagaaacccgggacgagaagacctggggacgagaagacctggacgag
gaaacccgggaaaagaacatcttcaggccagagcgagacccccttgctac
aggaggattcagactgcatcacggggagatggttaataaagtccctgtaa
acagatgtgagaggatccggggtggaattcgaactcctcacctggggaac
gtactgatgaaagagaaagagaaa
agaagcctcaagcctcaatctcccaagttctgggcttataaatatttgcc
accatacctggctgagactacaggtttaatgacctagaattagaggggct
aaagagttggttcaatggttgtgagcatgttactcttgcagaggacctgt
gttttgaaagactcacaatgtgaggactccctcatgttctgactcaggag
aggggacaccccaaatcactcatgagaaacaatcttgatgcaaactgcca
gaggacttttattccaggcacgctctggggcccacagtcatacgccacac
agggttagaagaccttggagccctgagtagctgggtaagtgggaatgtaa
aggaagaaaccacaactcaggggggtggggagggcgttgttggtgtggag
catgactgcggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_98243245_98243937
seq2: B6Ng01-065I23.b_438_1118

seq1  TGTGGGGAGCGGGTGTGGCGGCAGTCCCAAAGGTGCCAGGGACTGCAGCT  50
      ||||||||||||||||||||||||||||||||| ||||| ||||||||||
seq2  TGTGGGGAGCGGGTGTGGCGGCAGTCCCAAAGGCGCCAGAGACTGCAGCT  50

seq1  AAGTCATATGACTTGCACCTGACTTCCTCATATAAGACACAAACATCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATATGACTTGCACCTGACTTCCTCATATAAGACACAAACATCTTG  100

seq1  AGTGCTGCACAGGTGTACCAGGATACAGGTGAATCCAATTTGGTGGAGAT  150
      |||||||| ||||||||||||||||| |||||||||| |||| |||||||
seq2  AGTGCTGCGCAGGTGTACCAGGATACTGGTGAATCCATTTTGATGGAGAT  150

seq1  TTGCCCCTGCTGCCCTGATTAGCTGAAGCCTCGTGACTGGCGAGGGGGCG  200
       ||||||||||||||||||||||||||||  |||| |||| |||||||||
seq2  ATGCCCCTGCTGCCCTGATTAGCTGAAGCTGCGTGCCTGGTGAGGGGGCG  200

seq1  TGGCCTGCGGTGTGTGGATGAGAGAGAGTATAAAA--GAGTGAGAGGCCC  248
      |||||||||||| ||||||||||||||||||||||  |||||||||||||
seq2  TGGCCTGCGGTGCGTGGATGAGAGAGAGTATAAAAAGGAGTGAGAGGCCC  250

seq1  AGGGTTC-GGGGGAGATATAAAAACA-AGGGAGATATAAAAACAAGGGAG  296
      ||||||| |||||||||||| |||||  ||||||||||||||||||||||
seq2  AGGGTTCGGGGGGAGATATATAAACAGCGGGAGATATAAAAACAAGGGAG  300

seq1  ATATAAAAACAAGGGAGATATAAACAGGGGAGATATAAACAAGGGAGATA  346
      ||||  |||||||||||||||||             |||||||||| |||
seq2  ATAT--AAACAAGGGAGATATAA-------------AAACAAGGGAAATA  335

seq1  TATGGAGAAAGAAGAAACAGGACTGAATAAACGTGTGCAGAAGGATCCTG  396
      ||  ||||||| || |||||||||||||||| ||||||||||||||||||
seq2  TA--GAGAAAG-AGGAACAGGACTGAATAAATGTGTGCAGAAGGATCCTG  382

seq1  TAGCAGCGTCGTTCTTCCTGGCCAGTTGGGCTCGCGTAAGAGTTGGTGCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TAGCAGCGTCGTTCTTCCTGGCCAGTTGGGCTCGCGTAAGAGTTGGTGCC  432

seq1  GGAAATCCGGGAAGAAAAGACCCGGGACGAGAAAACCCGGGACGAGAAGA  496
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGAAATCCGGGAAGAAAAGACCCGGGACGAG-AAACCCGGGACGAGAAGA  481

seq1  CCTG---------------GGACGAGAAATCCTGGGAAAAGAAACATCTT  531
      ||||               ||||||| || || |||||||| ||||||||
seq2  CCTGGGGACGAGAAGACCTGGACGAGGAAACCCGGGAAAAG-AACATCTT  530

seq1  CAGGCATGAGCGAAGACCCCC-TGCTACAGGAAGGATTCAGAACTGCATC  580
      |||||  ||||| |||||||| ||||||||| ||||||||| ||||||||
seq2  CAGGCCAGAGCG-AGACCCCCTTGCTACAGG-AGGATTCAG-ACTGCATC  577

seq1  ACAGGGAAGAAGGGGTTAATAAAGGTTCCCATAAAACAGACTGTTGAGAA  630
      || ||| |||   |||||||||||  ||||   ||||||| || |||| |
seq2  AC-GGGGAGA--TGGTTAATAAAG--TCCCTGTAAACAGA-TG-TGAG-A  619

seq1  GGATCCGGTGTGGATTCAGAACTCTTCAGCTGGGGAACGGTACTGATG-A  679
      |||||||| ||||| |  |||||| ||| ||||||||| ||||||||| |
seq2  GGATCCGGGGTGGAATTCGAACTCCTCACCTGGGGAAC-GTACTGATGAA  668

seq1  AGAGAAAGAAGAAA  693
      |||||||| |||||
seq2  AGAGAAAG-AGAAA  681

seq1: chr4_40237588_40237986
seq2: B6Ng01-065I23.g_69_467

seq1  GAATTCAGAAGCCTCAAGCCTCAATCTCCCAAGTTCTGGGCTTATAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAGCCTCAAGCCTCAATCTCCCAAGTTCTGGGCTTATAAATA  50

seq1  TTTGCCACCATACCTGGCTGAGACTACAGGTTTAATGACCTAGAATTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCACCATACCTGGCTGAGACTACAGGTTTAATGACCTAGAATTAGA  100

seq1  GGGGCTAAAGAGTTGGTTCAATGGTTGTGAGCATGTTACTCTTGCAGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTAAAGAGTTGGTTCAATGGTTGTGAGCATGTTACTCTTGCAGAGG  150

seq1  ACCTGTGTTTTGAAAGACTCACAATGTGAGGACTCCCTCATGTTCTGACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGTTTTGAAAGACTCACAATGTGAGGACTCCCTCATGTTCTGACT  200

seq1  CAGGAGAGGGGACACCCCAAATCACTCATGAGAAACAATCTTGATGCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGAGGGGACACCCCAAATCACTCATGAGAAACAATCTTGATGCAAA  250

seq1  CTGCCAGAGGACTTTTATTCCAGGCACGCTCTGGGGCCCACAGTCATACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAGAGGACTTTTATTCCAGGCACGCTCTGGGGCCCACAGTCATACG  300

seq1  CCACACAGGGTTAGAAGACCTTGGAGCCCTGAGTAGCTGGGTAAGTGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACAGGGTTAGAAGACCTTGGAGCCCTGAGTAGCTGGGTAAGTGGGA  350

seq1  ATGTAAAGGAAGAAACCACAACTCAGGGGGGTGGGGAGGGCGTTGTTGG  399
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAAGGAAGAAACCACAACTCAGGGGGGTGGGGAGGGCGTTGTTGG  399