BAC Information

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BAC

Clone NameB6Ng01-066C01
Chromosome9 (Build37)4 (Build37)
Map Location 19,553,123 - 19,553,81494,633,156 - 94,633,896
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneOlfr24, Olfr828, Olfr829, Olfr830, Olfr831-ps1, Olfr832, GA_x5J8B7W6RL5-13870817-13871726, Olfr834, Olfr835, Olfr836, Olfr837, GA_x5J8B7W6RL5-13695863-13696754, Olfr839-ps1, GA_x5J8B7W6RL5-13645512-13646298, Olfr841-ps1, Olfr842-ps1, Olfr843, Olfr845, Olfr1522-ps1, Olfr846, LOC665697, Olfr847, GA_x5J8B7W6RL5-13451244-13452122, Olfr849, Olfr850, Olfr851, Olfr852-ps1, Olfr853, Olfr854, Olfr855, Zfp75, EG624341, LOC665751, Olfr857, Olfr858-ps1
Downstream geneOlfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066C01.bB6Ng01-066C01.g
ACCDH885391DH885392
length1,053760
definitionDH885391|Mus musculus domesticus DNA, BAC clone: B6Ng01-066C01, 5' end.DH885392|Mus musculus domesticus DNA, BAC clone: B6Ng01-066C01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(19,553,123 - 19,553,814)(94,633,156 - 94,633,896)
sequence
gaattcagatctataacatatcctctggttattggcctcatcattagtgt
caggaatatgcagtctcacagagtacgaattagttcttatggtaatgcaa
atgggtactctcatactatccatagtattacaccaatgagcaatttgtca
agcttgttgtgttatagattgtaaggtttacacttggatgaggttgataa
ccaaccctgctcccagtgatttaaatattatgttccaaaactataaaatc
tagccagtaggaatgaacattttaggtcaatacaactgttatctccatgt
tctgtgattaagaatgtggtaccttcagaaatggggtttgactatcgagt
tctggggggttactaagattaacaatagcctataatgcttatgggtctat
gggataaaaatggataataactcactaaaggctaacttaataccattaca
tttttgacaaaggcttaaattatctgctactttgtcttaatgattagtct
tttggctgaataagaagaaatttaaatgtagatttgatttgcatttcagt
gatgtttaatgagattaaacattttccccaacttacattttttttttctc
atgagatttatctgttcattatgttactccatttttggtgttttttttat
atattagtttttttttctttgtatgttcttcacatttgtctcctatcaga
tgtacagtgagaaaaatattctcccattttgtaggttttaacttccgtca
attgtttcctttgttctgcagaaacattttaattttatacaacctcattt
gaaatttgtcattattttctgacttataggattcttattcagaaagttac
taacaattctaggatcttttttattgtattaaaaactttttccatatata
tttgatcatgatttccttgccaaattgtacaagatctctacacttccctg
acatcatattttttgtcttttttcaaactgttcttataaaacaaaacaaa
catttggggcttacatttaaaaatctgccagtacatttttaaagtcttgc
aaa
gaattctctgtttagatctgtaccctacttttaaatagggttgttttctt
gatgtctgggttttttaagttctttatatagtttagatattagctctcta
tcagaaatatagttggcaaaatttttttcctattctgtggccgctctttt
ctccaaatgatggtgtcctttgccatagaaacttttcaatttcatggggt
tccatttattaattgttctttctgggtcttcagttcaattccattgatca
gtctgtctattattgctctgttattgttctgttcagaaagttttttctta
tgccagtaaattcaaactattccctatgttctcttccaccagatctagcc
ttatgtcgaggtctttgatccatttagagttgagttcagtatctacctat
ttgccttcttcttcatgcagccatcaggtttgatcagcaccattaattga
aggcgctatcttttttcctgatttttttttcaaaagattaattgcccatt
ggtgtatggacttatgactgtatgttaaatgtgatttcatttttcagcgt
gcctcttgtagctatatttctgtaatacaaaattgagcatggtaatactt
ccagcagtttatttttcaggatattttatattcataatccaaatacacac
acacacatacatatatatgtatgtgtgtgtgtatatatatatatattctg
aatcgtgtgtgtgtgtgtatgctattgtagaagatacagctttccacatt
tctttcacag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_19553123_19553814
seq2: B6Ng01-066C01.b_411_1095

seq1  TTAACAATAGCCTATAATGC-TAAGGGTCTATGGGATAAAAATGGATAAT  49
      |||||||||||||||||||| || ||||||||||||||||||||||||||
seq2  TTAACAATAGCCTATAATGCTTATGGGTCTATGGGATAAAAATGGATAAT  50

seq1  AACTCACTAAAGGCTAACTTAATACCATTACATTTTTGACAAAGGCTCAA  99
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AACTCACTAAAGGCTAACTTAATACCATTACATTTTTGACAAAGGCTTAA  100

seq1  ATTATCTGCTACTTTGTCTTAATGATTAGTCTTTCGGCTGAATGAGAAGA  149
      |||||||||||||||||||||||||||||||||| |||||||| ||||||
seq2  ATTATCTGCTACTTTGTCTTAATGATTAGTCTTTTGGCTGAATAAGAAGA  150

seq1  AATTTAAATGTAGATTTCATTTGCATTTCAGTGATGGTTAATGAGATTAA  199
      ||||||||||||||||| |||||||||||||||||| |||||||||||||
seq2  AATTTAAATGTAGATTTGATTTGCATTTCAGTGATGTTTAATGAGATTAA  200

seq1  ATATTTTTCCCCAACTTGCACTTTTTT----TCATGAGATTTATTTGTTC  245
      | | ||||||||||||| || ||||||    ||||||||||||| |||||
seq2  ACA-TTTTCCCCAACTTACATTTTTTTTTTCTCATGAGATTTATCTGTTC  249

seq1  ATTATGTTACCCCATTTTTGGTGGGTTTTTTTTTTACATATTAGTTTTTT  295
      |||||||||| ||||||||||||    ||||||||| |||||||||||||
seq2  ATTATGTTACTCCATTTTTGGTG----TTTTTTTTATATATTAGTTTTTT  295

seq1  GTTCTTTGTATGTTCTTCACATTTGTTTCCTATCAGATGTACAGTGACAA  345
       ||||||||||||||||||||||||| |||||||||||||||||||| ||
seq2  TTTCTTTGTATGTTCTTCACATTTGTCTCCTATCAGATGTACAGTGAGAA  345

seq1  AAATATTCTCCCATTTTGTAGGTTTTAACTTCCGTCAATTGTTTCCTTTG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTCTCCCATTTTGTAGGTTTTAACTTCCGTCAATTGTTTCCTTTG  395

seq1  TTCTGCAGAAACATTTAAATTTTATACAATCTCATTTGAAATTTGTCATT  445
      |||||||||||||||| |||||||||||| ||||||||||||||||||||
seq2  TTCTGCAGAAACATTTTAATTTTATACAACCTCATTTGAAATTTGTCATT  445

seq1  ATTTTCTGACTTATAGGATTCTTATTCAGAAAGTTACTAACAATTCTAGG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTGACTTATAGGATTCTTATTCAGAAAGTTACTAACAATTCTAGG  495

seq1  ATC-TTTTTCTTGTATTAAAACCTTTTTCCATATATATTTGATCATGATT  544
      ||| ||||| ||||||||||| ||||||||||||||||||||||||||||
seq2  ATCTTTTTTATTGTATTAAAAACTTTTTCCATATATATTTGATCATGATT  545

seq1  TCCTTGCCAAATTGTACAAGAATTTCTACACTTCCCTGGCAAACCTATTT  594
      |||||||||||||||||||| || |||||||||||||| | | | |||||
seq2  TCCTTGCCAAATTGTACAAG-ATCTCTACACTTCCCTGAC-ATCATATTT  593

seq1  TATGTTCTTTTTTCAAAACTG-TCTTTTAAAACAAAGCAAAACAGCATTT  643
      | || ||||||||| |||||| |||| ||||||||| ||||    |||||
seq2  TTTG-TCTTTTTTC-AAACTGTTCTTATAAAACAAAACAAA----CATTT  637

seq1  GGGGTTTTACATTTTAAAAATCTGCAAGTACATTTTAAAAGTC-TGCAAA  692
      ||||  ||||| ||||||||||||| |||||||||| |||||| ||||||
seq2  GGGG-CTTACA-TTTAAAAATCTGCCAGTACATTTTTAAAGTCTTGCAAA  685

seq1: chr4_94633156_94633896
seq2: B6Ng01-066C01.g_711_828

seq1  ATACACACAAATACACACACATACATATATATTTGATATACATATGTATA  50
                ||||||||||| ||||| ||||         |||||||| 
seq2  ----------ATACACACACACACATACATAT---------ATATGTATG  31

seq1  TATGTGTGTATATATACACACACACACATATATGTATATATATTTGATAT  100
      | ||||||||||||||                  ||||||| | |||   
seq2  TGTGTGTGTATATATA------------------TATATAT-TCTGAATC  62

seq1  ATATATATCAAAGTTTCATTATTCAGTCATCTGGTGATGA-ACAACTAGG  149
       | | |      || |   ||| |  |    ||  || || ||| ||   
seq2  GTGTGT------GTGTGTGTATGCTAT----TGTAGAAGATACAGCT---  99

seq1  AAAATTCCA-ATTTTTTGCTATACTGAATAAAGCACAACTAGTAGAATAC  198
          ||||| |||| || |   || |                        
seq2  ----TTCCACATTTCTTTC---ACAG------------------------  118

seq1  ATTATTTACATTGGAAAAAAGGATCTCACCTGAGGCACTTCCAATTTTTA  248
                                                        
seq2  --------------------------------------------------  118

seq1  TCTAATTATGCTTCTAGAGCTTAAATGAATACAGTGGTCTGGAGAGCTGG  298
                                                        
seq2  --------------------------------------------------  118

seq1  CTCAGCAATTAAGGAATACTGGCTGCTTTTCCAGAGGACAGGATCAGTTT  348
                                                        
seq2  --------------------------------------------------  118

seq1  CTAGAACCCACACAGAGACTCACAGCCACCTGTAACTCCAATTAAGGATT  398
                                                        
seq2  --------------------------------------------------  118

seq1  CAATGCCCAACCCCTTCTGGCCTCTGAGGACACTGAATACACTGTGGTAA  448
                                                        
seq2  --------------------------------------------------  118

seq1  ACACAGATTCATGTAGGCAAAACATTCATATACGTGTGTGTGTGTGTGTA  498
                                                        
seq2  --------------------------------------------------  118

seq1  TATATATGATAAAAATGAACTACCCTAACTCAAAAAATGTACACAACTAA  548
                                                        
seq2  --------------------------------------------------  118

seq1  ATACAGAACAAATTATTTGAAAAATTAAGGAACTTGACCATGAATACATC  598
                                                        
seq2  --------------------------------------------------  118

seq1  TTTCTAAACAGGGTTAATAAATTTTTCAGACAGTTCTTTATAACAATAAT  648
                                                        
seq2  --------------------------------------------------  118

seq1  AAAAACCCTTTTGTTTGTAAACAGATTTCATAATTATATTAGTAAGCATT  698
                                                        
seq2  --------------------------------------------------  118

seq1  TCTATCTCCTAAATTATAAAATTTCCACAGGTTTCTTTCACAG  741
                                                 
seq2  -------------------------------------------  118