BAC Information

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BAC

Clone NameB6Ng01-066C10
Chromosome4 (Build37)
Map Location 89,181,890 - 89,257,156
singlet/doubletdoublet
Overlap genenone
Upstream geneOTTMUSG00000007655, Ifna14, Ifna9, Mrpl48-ps, Ifna12, C87499, Ifna13, LOC546834, OTTMUSG00000011275, Ifna2, Ifnab, LOC546835, Klhl9, LOC100040477, Ifnz, LOC100041062, EG545645, LOC668147, OTTMUSG00000011291, OTTMUSG00000011290, OTTMUSG00000011265, Ifnz, OTTMUSG00000011269, OTTMUSG00000011270, OTTMUSG00000011272, OTTMUSG00000011268, OTTMUSG00000011273, OTTMUSG00000011282, OTTMUSG00000011285, OTTMUSG00000011289, Ifna7, Ifna11, Ifna6, Ifna5, Ifna4, Ifna1, Ifne1, LOC100040617, Mtap, LOC625574, Cdkn2a, Cdkn2b, LOC664785
Downstream geneDmrta1, Zfp352, LOC619842, LOC435792
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066C10.bB6Ng01-066C10.g
ACCDH885409DH885410
length1,1041,085
definitionDH885409|Mus musculus domesticus DNA, BAC clone: B6Ng01-066C10, 5' end.DH885410|Mus musculus domesticus DNA, BAC clone: B6Ng01-066C10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,256,045 - 89,257,156)(89,181,890 - 89,182,982)
sequence
gaattccaattctatagtattgactctaagatgagcatatcctcattgct
gcactcaaatgtacatctaggctatcacaataatcaatttctctactagt
agaaagaaaaggcctcataaactccatcccttgtgtaataaatgctcact
atactgatacatattattgatttattggatgtccattttccctttgatac
ccgtagcacacagcaacttttgccacacatgtagttgctttcccaatatg
ggatgaataccctgaagtcagtgcatagacactggacgatgtcacaggca
gaaatcagtaggttttcttggcgagcacaggaacaacttttgtttctctt
gggtttcttgagactagtgctagagcagtaaggagaacacagaggtctga
agctaaggaaagcttcctcctgggcgatgcaggctgaaaactttcattca
aattctgttaccaagtacaggggctgtggtgcaccctcactgaaatataa
caatcttagacctacatatgaagtcagtatttctagatttctctttggta
ttatatctttctaaaacataaaaggtgcatttttaagccaagccattttt
tcttcgttgttttaattaaagataatttttccatagaatatattctgatc
acaccacaaggatcctgtgcctgacactggctggatggccaggaactaga
ggctgacctaggatagaactgaacacaactgacaaaaaaaaaacccggca
agggaatgattcctaatgatattgattggtgcctagttcaattgtcatca
gagatgctttattcagcaatggatgtgagtagatgtcaagatccacagcc
aaacattaggcagaatgcaggaaccgagtcaaagatggggagtaagagtt
gtaggagcctgtggtggaatcccatgcctgacctaaagctgtactacaga
gcaatagtgattaaaaactgcatggtactggtatagtgacagacaagtag
accattgaatagaatcgaagaccctgaaatgacccacacacctatacaga
tagttctcatgttttctttacatgaagatgtatctatattgggtgaatga
tgaa
gaattctgtggtttgcatatcctgaaggggaagagaagacactgtatggc
taacatttatttgaaatagcaagttggaaagaaaaattcttcgataaaag
ttcagcattaggtaagaaacaccagaggctctctccgttcttttatgaag
attttgtctgtatgtacgtctctgacaataccatacagaagtaactcttc
tgcctgtgcacagtcccagctttatgtactgcccactgaaatctgagcag
gtgtttagtagcagtaattcacaagcaataagcaaatggctgttttttca
ttggagtttgtgctatagatgaagatccaggtcatttctctgagactgct
ggataacaccaccaacactgtcattgtacaatatgatgaagtccactctg
tcatctgtaacaacaaaaagtactggccaaggaatacagggattttttct
ttagcgtcaaagtagatgatgaagatggtttgtaattaaaacagaaaaaa
aaagcccagctcatttggaaaaaactgattgtgaatggaaaaagagaaat
aggtacaatttacttgggatcttagtgtagacagatactacatcccaaac
accgagtgcttgagtgaatgtgctgtggtgtttgacaataagatttgctg
tacagagagatccgtagatgcagcaactgtccatcactcttttataagtg
tctcacagtgcccttgcttcctagttctctttgctctaactatacggcac
tgagtcaacctccagcctctgatgagatgcaagagcatcctgactctcag
agggtgctgtctcagttcaaaatcagcgatgtttatttctgggttgtatc
tcacaacaggaagcacaggctggggtttgtgccagtaacaaacacttaaa
tatctgagtggcttagcccaacaacctttcttctttctcacacttctgtt
ccctcgaggcaggcatgggctttgcttattgtaccatcccaactgttttc
agataacatagcacaggagtgacaaattacacgctgctgtcgagacgctg
cttgcatacctttgttctattcacacgctggtttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_89256045_89257156
seq2: B6Ng01-066C10.b_45_1148 (reverse)

seq1  TTCATCATTCACACACTATATGAATACATCTTCAATGTAAAAGAAAACAT  50
      |||||||||||| ||  ||||  |||||||||| |||| |||||||||||
seq2  TTCATCATTCACCCA--ATATAGATACATCTTC-ATGT-AAAGAAAACAT  46

seq1  TGGAGAACTATCTGTATAGGTGTGTGGGTTCATTTCTGGGTCTTCGATTC  100
        |||||||||||||||||||||||||| ||||||| |||||||||||||
seq2  --GAGAACTATCTGTATAGGTGTGTGGG-TCATTTCAGGGTCTTCGATTC  93

seq1  TATTCATTGGTCTACTTGTCTGTCACTATACCAGTACCATGCAGTTTTTA  150
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAATGGTCTACTTGTCTGTCACTATACCAGTACCATGCAGTTTTTA  143

seq1  ATCACTATTGCTCTGTAGTACAGCTTTAGGTCAGGCATGGTGATTCCACC  200
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ATCACTATTGCTCTGTAGTACAGCTTTAGGTCAGGCATGG-GATTCCACC  192

seq1  ACAGGCTCCTACAACTCTTACTCCCCATCTTTGACTCGGTTCCTGCATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCTCCTACAACTCTTACTCCCCATCTTTGACTCGGTTCCTGCATTC  242

seq1  TGCCTAATGTTTGGCTGTGGATCTTGACATCTACTCACATCCATTGCTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAATGTTTGGCTGTGGATCTTGACATCTACTCACATCCATTGCTGA  292

seq1  ATAAAGCATCTCTGATGACAATTGAACTAGGCACCAATCAATATCATTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGCATCTCTGATGACAATTGAACTAGGCACCAATCAATATCATTAG  342

seq1  GAATCATTCCCTTGCCGGGTTTTTTTTTTGTCAGTTGTGTTCAGTTCTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCATTCCCTTGCCGGGTTTTTTTTTTGTCAGTTGTGTTCAGTTCTAT  392

seq1  CCTAGGTCAGCCTCTAGTTCCTGGCCATCCAGCCAGTGTCAGGCACAGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGGTCAGCCTCTAGTTCCTGGCCATCCAGCCAGTGTCAGGCACAGGA  442

seq1  TCCTTGTGGTGTGATCAGAATATATTCTATGGAAAAATTATCTTTAATTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTGGTGTGATCAGAATATATTCTATGGAAAAATTATCTTTAATTA  492

seq1  AAACAACGAAGAAAAAATGGCTTGGCTTAAAAATGCACCTTTTATGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACGAAGAAAAAATGGCTTGGCTTAAAAATGCACCTTTTATGTTTT  542

seq1  AGAAAGATATAATACCAAAGAGAAATCTAGAAATACTGACTTCATATGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGATATAATACCAAAGAGAAATCTAGAAATACTGACTTCATATGTA  592

seq1  GGTCTAAGATTGTTATATTTCAGTGAGGGTGCACCACAGCCCCTGTACTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTAAGATTGTTATATTTCAGTGAGGGTGCACCACAGCCCCTGTACTT  642

seq1  GGTAACAGAATTTGAATGAAAGTTTTCAGCCTGCATCGCCCAGGAGGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACAGAATTTGAATGAAAGTTTTCAGCCTGCATCGCCCAGGAGGAAG  692

seq1  CTTTCCTTAGCTTCAGACCTCTGTGTTCTCCTTACTGCTCTAGCACTAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTTAGCTTCAGACCTCTGTGTTCTCCTTACTGCTCTAGCACTAGT  742

seq1  CTCAAGAAACCCAAGAGAAACAAAAGTTGTTCCTGTGCTCGCCAAGAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAGAAACCCAAGAGAAACAAAAGTTGTTCCTGTGCTCGCCAAGAAAA  792

seq1  CCTACTGATTTCTGCCTGTGACATCGTCCAGTGTCTATGCACTGACTTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTGATTTCTGCCTGTGACATCGTCCAGTGTCTATGCACTGACTTCA  842

seq1  GGGTATTCATCCCATATTGGGAAAGCAACTACATGTGTGGCAAAAGTTGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTATTCATCCCATATTGGGAAAGCAACTACATGTGTGGCAAAAGTTGC  892

seq1  TGTGTGCTACGGGTATCAAAGGGAAAATGGACATCCAATAAATCAATAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGCTACGGGTATCAAAGGGAAAATGGACATCCAATAAATCAATAAT  942

seq1  ATGTATCAGTATAGTGAGCATTTATTACACAAGGGATGGAGTTTATGAGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATCAGTATAGTGAGCATTTATTACACAAGGGATGGAGTTTATGAGG  992

seq1  CCTTTTCTTTCTACTAGTAGAGAAATTGATTATTGTGATAGCCTAGATGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTCTTTCTACTAGTAGAGAAATTGATTATTGTGATAGCCTAGATGT  1042

seq1  ACATTTGAGTGCAGCAATGAGGATATGCTCATCTTAGAGTCAATACTATA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTGAGTGCAGCAATGAGGATATGCTCATCTTAGAGTCAATACTATA  1092

seq1  GAATTGGAATTC  1112
      ||||||||||||
seq2  GAATTGGAATTC  1104

seq1: chr4_89181890_89182982
seq2: B6Ng01-066C10.g_72_1156

seq1  GAATTCTGTGGTTTGCATATCCTGAAGGGGAAGAGAAGACACTGTATGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGGTTTGCATATCCTGAAGGGGAAGAGAAGACACTGTATGGC  50

seq1  TAACATTTATTTGAAATAGCAAGTTGGAAAGAAAAATTCTTCGATAAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTTATTTGAAATAGCAAGTTGGAAAGAAAAATTCTTCGATAAAAG  100

seq1  TTCAGCATTAGGTAAGAAACACCAGAGGCTCTCTCCGTTCTTTTATGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCATTAGGTAAGAAACACCAGAGGCTCTCTCCGTTCTTTTATGAAG  150

seq1  ATTTTGTCTGTATGTACGTCTCTGACAATACCATACAGAAGTAACTCTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTCTGTATGTACGTCTCTGACAATACCATACAGAAGTAACTCTTC  200

seq1  TGCCTGTGCACAGTCCCAGCTTTATGTACTGCCCACTGAAATCTGAGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTGCACAGTCCCAGCTTTATGTACTGCCCACTGAAATCTGAGCAG  250

seq1  GTGTTTAGTAGCAGTAATTCACAAGCAATAAGCAAATGGCTGTTTTTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTAGTAGCAGTAATTCACAAGCAATAAGCAAATGGCTGTTTTTTCA  300

seq1  TTGGAGTTTGTGCTATAGATGAAGATCCAGGTCATTTCTCTGAGACTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTTTGTGCTATAGATGAAGATCCAGGTCATTTCTCTGAGACTGCT  350

seq1  GGATAACACCACCAACACTGTCATTGTACAATATGATGAAGTCCACTCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAACACCACCAACACTGTCATTGTACAATATGATGAAGTCCACTCTG  400

seq1  TCATCTGTAACAACAAAAAGTACTGGCCAAGGAATACAGGGATTTTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGTAACAACAAAAAGTACTGGCCAAGGAATACAGGGATTTTTTCT  450

seq1  TTAGCGTCAAAGTAGATGATGAAGATGGTTTGTAATTAAAACAGAAAAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCGTCAAAGTAGATGATGAAGATGGTTTGTAATTAAAACAGAAAAAA  500

seq1  AAAGCCCAGCTCATTTGGAAAAAACTGATTGTGAATGGAAAAAGAGAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCAGCTCATTTGGAAAAAACTGATTGTGAATGGAAAAAGAGAAAT  550

seq1  AGGTACAATTTACTTGGGATCTTAGTGTAGACAGATACTACATCCCAAAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACAATTTACTTGGGATCTTAGTGTAGACAGATACTACATCCCAAAC  600

seq1  ACCGAGTGCTTGAGTGAATGTGCTGTGGTGTTTGACAATAAGATTTGCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGAGTGCTTGAGTGAATGTGCTGTGGTGTTTGACAATAAGATTTGCTG  650

seq1  TACAGAGAGATCCGTAGATGCAGCAACTGTCCATCACTCTTTTATAAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGAGATCCGTAGATGCAGCAACTGTCCATCACTCTTTTATAAGTG  700

seq1  TCTCACAGTGCCCTTGCTTCCTAGTTCTCTTTGCTCTAACTATACGGCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACAGTGCCCTTGCTTCCTAGTTCTCTTTGCTCTAACTATACGGCAC  750

seq1  TGAGTCAACCTCCAGCCTCTGATGAGATGCAAGAGCATCCTGACTCTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCAACCTCCAGCCTCTGATGAGATGCAAGAGCATCCTGACTCTCAG  800

seq1  AGGGTGCTGTCTCAGTTCAGAATCAGCGATGTTTAATTCTGGGTTGTATC  850
      ||||||||||||||||||| ||||||||||||||| ||||||||||||||
seq2  AGGGTGCTGTCTCAGTTCAAAATCAGCGATGTTTATTTCTGGGTTGTATC  850

seq1  TCACAACAGGAAGCACAGGCTGGGGTTTGTGCCAGTAACAAACACTTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACAGGAAGCACAGGCTGGGGTTTGTGCCAGTAACAAACACTTAAA  900

seq1  TATCTGAGTGGCTTAGCCCAACAACCTTTCTTCCTTTCTCACACATCTGT  950
      |||||||||||||||||||||||||||||||| ||||||||||| |||||
seq2  TATCTGAGTGGCTTAGCCCAACAACCTTTCTT-CTTTCTCACACTTCTGT  949

seq1  TCCCTCAGAGGCAGGCATGGGCTTTGCTTATTGTAACCATCCCAAACTGT  1000
      |||||| ||||||||||||||||||||||||||| |||||||| ||||||
seq2  TCCCTC-GAGGCAGGCATGGGCTTTGCTTATTGT-ACCATCCC-AACTGT  996

seq1  TTTCAGGATAACATAGCACAGGAAGTGACAAATTACACGCTGCTGCCGAG  1050
      ||||| |||||||||||||||| |||||||||||||||||||||| ||||
seq2  TTTCA-GATAACATAGCACAGG-AGTGACAAATTACACGCTGCTGTCGAG  1044

seq1  ACGCTGCCTGCATACACTTTGTTCTTATTCACACGCTGGTTTC  1093
      ||||||| ||||||| |||||||| ||||||||||||||||||
seq2  ACGCTGCTTGCATAC-CTTTGTTC-TATTCACACGCTGGTTTC  1085