BAC Information

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BAC

Clone NameB6Ng01-066N22
Chromosome4 (Build37)
Map Location 42,934,451 - 43,047,490
singlet/doubletdoublet
Overlap geneN28178, Dnajb5, 1700022I11Rik, Vcp, Fancg, Pigo, Stoml2, B230312A22Rik
Upstream geneLOC100039817, LOC100042536, LOC100039824, LOC100042539, LOC100042544, LOC100039848, LOC100039863, LOC100042555, 1700045I11Rik, LOC100039894, LOC100039909, EG545605, LOC674214, LOC100038965, LOC100039053, LOC100039193, LOC100039374, LOC100039930, LOC100038993, LOC100039939, Ccl19-ps3, Ccl21c, LOC100039323, LOC665845, LOC100039973, LOC100039986, 4933409K07Rik, LOC100039344, LOC100039995, EG623054, Ccl19-ps2, LOC100039331, LOC100039131, LOC100040035, LOC100040048, Il11ra2, LOC665962, LOC545614, 1700008B15Rik, Ccl19, Ccl21b, LOC100039205, LOC433698, BC049635
Downstream geneUnc13b, 4930417M19Rik, Rusc2, 4833436C18Rik, Tesk1, Cd72, Sit1, Rmrp, LOC622404, E130306D19Rik, Car9, Tpm2, Tln1, Creb3, Gba2, 1110029E03Rik, LOC100039672, LOC100040179, Npr2, Spag8, Hint2, Serf2-ps, 4930412F15Rik, Olfr70, Olfr71, LOC100039781, 5430416O09Rik, A630077J23Rik, GA_x5J8B7W5BNN-892919-892147, Olfr159, Olfr29-ps1, Olfr156, LOC100040268, Olfr155, Reck, Glipr2, Ccin, Clta
LinkOpen Mouse BAC browser

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BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-066N22.bB6Ng01-066N22.g
ACCDH885925DH885926
length1,085590
definitionDH885925|Mus musculus domesticus DNA, BAC clone: B6Ng01-066N22, 5' end.DH885926|Mus musculus domesticus DNA, BAC clone: B6Ng01-066N22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,934,451 - 42,935,552)(43,046,902 - 43,047,490)
sequence
gaattcaaatgaatattctcttttaaacaaatattttaggcatactacat
caaaccagtcctttgagctgatgctaattcatatgtgagtacagattccc
ttgcctatttctatccagcaccagggccggcttcacagctctaagtcatg
gtggagtctccatatagctccatgcttggcatgtgtttttacctcttcct
ggaatgcttttttttttttttcctcatccactgggttaactcccactcat
cttcaaaatttagctcaagcaacacctttttttttttaatcctacacgta
tgccccctacacatgcacacactcctgcatcctcacagactgagactcca
tctcttcatcctagtgacagctattagcacttgatttgtgcctaacacat
agtaggctgcacacacacacacacacacacacacacacacacacacacac
acacggggtggggagagcttatagactcaataagcaagagagtggcaaga
tagttaaagtgtaataactgcataaatgaagccgaacctgtgcttcgggg
acctaagagcagaaagcagggagtgcctctccatcttgctgggaaaattc
acttgctgagtgcagtcccaccagccaatcactgccagtgcgatgttcct
taactgttgctctgcttctgtgggaagtcagagctgtagcttttaatgaa
gacagcccaatccccagaggctaaagatcatgccatcgttttgctctcat
gtatattaaagcctcagtaaatattaagcagcagcaggcttgtccctcct
gcctcggagcctggagctgagctgggagacagttttactcgggctccagc
ctgtctgcttcttagaatctccagaaaacctctctgcagttcaggtgaca
gtcttcctagataggcagagaggaccgagcagatggggagggtggcttcg
gggtctacagtcatgagactgacacagtctgtaggttactgccaggagac
ggcgactagaacgactccagacactggatggagaactggatctaggcaac
agcagaggagaacagctgaccactgggtgcctcaa
gaattcaatggtggaatgtgcctcaaaaaacaaaggaaagacttggcatc
gttctcagatgtgtctactccaccctaataccaggaatcactgcttcgag
gacgctttgcaccatctggccacattgagggctttactgcagagattgga
gccagtgggtcttactgtccccaacatgtcacgctgcccgtcactgtcac
cttttttgatgtttctgagcaaaatgcgccggcccccttcctggtatgac
ataaatctgaccccaaaattatctcagagggcttgggtggcaaaaggcat
ttcttccatgttcttcttctaggagtgagtcaggttaagaagggaagaat
tctagtatagggtagagccaagtccagggggaagtgctatagagctttta
gtatttggtgctcatgactgacttttctagctcctgccctggctaatggt
ttatggtcttcctagggagtcgtggacctgactcctctggggaggaaggg
ttacagtgtgcccaaggtgggcaccatccaagtggtgagtgacggagtgc
tgggcgccctgagggagtttgatgtgggaagagaggagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_42934451_42935552
seq2: B6Ng01-066N22.b_48_1132

seq1  GAATTCAAATGAATATTCTCTTTTAAACAAATATTTTAGGCATACTACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATGAATATTCTCTTTTAAACAAATATTTTAGGCATACTACAT  50

seq1  CAAACCAGTCCTTTGAGCTGATGCTAATTCATATGTGAGTACAGATTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCAGTCCTTTGAGCTGATGCTAATTCATATGTGAGTACAGATTCCC  100

seq1  TTGCCTATTTCTATCCAGCACCAGGGCCGGCTTCACAGCTCTAAGTCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTATTTCTATCCAGCACCAGGGCCGGCTTCACAGCTCTAAGTCATG  150

seq1  GTGGAGTCTCCATATAGCTCCATGCTTGGCATGTGTTTTTACCTCTTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAGTCTCCATATAGCTCCATGCTTGGCATGTGTTTTTACCTCTTCCT  200

seq1  GGAATGCTTTTTTTTTTTTTTCCTCATCCACTGGGTTAACTCCCACTCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGCTTTTTTTTTTTTTTCCTCATCCACTGGGTTAACTCCCACTCAT  250

seq1  CTTCAAAATTTAGCTCAAGCAACACCTTTTTTTTTTTAATCCTACACGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAAATTTAGCTCAAGCAACACCTTTTTTTTTTTAATCCTACACGTA  300

seq1  TGCCCCCTACACATGCACACACTCCTGCATCCTCACAGACTGAGACTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCCCTACACATGCACACACTCCTGCATCCTCACAGACTGAGACTCCA  350

seq1  TCTCTTCATCCTAGTGACAGCTATTAGCACTTGATTTGTGCCTAACACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCATCCTAGTGACAGCTATTAGCACTTGATTTGTGCCTAACACAT  400

seq1  AGTAGGCTGCACACACACACACACACACACACACACACACACACACACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGCTGCACACACACACACACACACACACACACACACACACACACAC  450

seq1  ACACGGGGTGGGGAGAGCTTATAGACTCAATAAGCAAGAGAGTGGCAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGGGGTGGGGAGAGCTTATAGACTCAATAAGCAAGAGAGTGGCAAGA  500

seq1  TAGTTAAAGTGTAATAACTGCATAAATGAAGCCGAACCTGTGCTTCGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTAAAGTGTAATAACTGCATAAATGAAGCCGAACCTGTGCTTCGGGG  550

seq1  ACCTAAGAGCAGAAAGCAGGGAGTGCCTCTCCATCTTGCTGGGAAAATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAAGAGCAGAAAGCAGGGAGTGCCTCTCCATCTTGCTGGGAAAATTC  600

seq1  ACTTGCTGAGTGCAGTCCCACCAGCCAATCACTGCCAGTGCGATGTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTGAGTGCAGTCCCACCAGCCAATCACTGCCAGTGCGATGTTCCT  650

seq1  TAACTGTTGCTCTGCTTCTGTGGGAAGTCAGAGCTGTAGCTTTTAATGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTGTTGCTCTGCTTCTGTGGGAAGTCAGAGCTGTAGCTTTTAATGAA  700

seq1  GACAGCCCAATCCCCAGAGGCTAAAGATCATGCCATCGTTTTGCTCTCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCCCAATCCCCAGAGGCTAAAGATCATGCCATCGTTTTGCTCTCAT  750

seq1  GTATATTAAAGCCTCAGTAAATATTAAGCAGCAGCAGGCTTGTCCCTCCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATTAAAGCCTCAGTAAATATTAAGCAGCAGCAGGCTTGTCCCTCCT  800

seq1  GCCTCGGAGCCTGGAGCTGAGCTGGGAGACAGTTTTACTCGGGCTCCAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCGGAGCCTGGAGCTGAGCTGGGAGACAGTTTTACTCGGGCTCCAGC  850

seq1  CTGTCTGCTTCTTAGAATCTCCAGAAAACCTCTCTGCAGTTCAGGTGACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTGCTTCTTAGAATCTCCAGAAAACCTCTCTGCAGTTCAGGTGACA  900

seq1  GTCTTCCTAGATAGGCAGAAGAGGACCGAAGCAGATGGGGAGGGTGGCTT  950
      |||||||||||||||||| ||||||||| |||||||||||||||||||||
seq2  GTCTTCCTAGATAGGCAG-AGAGGACCG-AGCAGATGGGGAGGGTGGCTT  948

seq1  CGGGGTCTACAGTCATGAGAACTGACACCAGTCTGTAGGTTACTGCCAGG  1000
      ||||||||||||||||||| ||||||| ||||||||||||||||||||||
seq2  CGGGGTCTACAGTCATGAG-ACTGACA-CAGTCTGTAGGTTACTGCCAGG  996

seq1  AGAACGGCGACTAGAAACAGACTCCCAGGACACTGGATGGAGAAACTGGA  1050
      || |||||||||||||   ||||||   |||||||||||||| |||||||
seq2  AG-ACGGCGACTAGAA--CGACTCC--AGACACTGGATGGAG-AACTGGA  1040

seq1  TTCCTAAAGCAACAGGCAGAGGAGAACAGCTGGACCACTTGGGTTGCCTC  1100
      |  || | |||||| |||||||||||||||| |||||||  || ||||||
seq2  T--CT-AGGCAACA-GCAGAGGAGAACAGCT-GACCACT--GGGTGCCTC  1083

seq1  AA  1102
      ||
seq2  AA  1085

seq1: chr4_43046902_43047490
seq2: B6Ng01-066N22.g_68_657 (reverse)

seq1  TTCTCCTCTCTTCCCACATC-AACTCCCTCAGGGCGCCCAGCACTCCGTC  49
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TTCTCCTCTCTTCCCACATCAAACTCCCTCAGGGCGCCCAGCACTCCGTC  50

seq1  ACTCACCACTTGGATGGTGCCCACCTTGGGCACACTGTAACCCTTCCTCC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCACCACTTGGATGGTGCCCACCTTGGGCACACTGTAACCCTTCCTCC  100

seq1  CCAGAGGAGTCAGGTCCACGACTCCCTAGGAAGACCATAAACCATTAGCC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGAGTCAGGTCCACGACTCCCTAGGAAGACCATAAACCATTAGCC  150

seq1  AGGGCAGGAGCTAGAAAAGTCAGTCATGAGCACCAAATACTAAAAGCTCT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGGAGCTAGAAAAGTCAGTCATGAGCACCAAATACTAAAAGCTCT  200

seq1  ATAGCACTTCCCCCTGGACTTGGCTCTACCCTATACTAGAATTCTTCCCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCACTTCCCCCTGGACTTGGCTCTACCCTATACTAGAATTCTTCCCT  250

seq1  TCTTAACCTGACTCACTCCTAGAAGAAGAACATGGAAGAAATGCCTTTTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAACCTGACTCACTCCTAGAAGAAGAACATGGAAGAAATGCCTTTTG  300

seq1  CCACCCAAGCCCTCTGAGATAATTTTGGGGTCAGATTTATGTCATACCAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCAAGCCCTCTGAGATAATTTTGGGGTCAGATTTATGTCATACCAG  350

seq1  GAAGGGGGCCGGCGCATTTTGCTCAGAAACATCAAAAAAGGTGACAGTGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGGGCCGGCGCATTTTGCTCAGAAACATCAAAAAAGGTGACAGTGA  400

seq1  CGGGCAGCGTGACATGTTGGGGACAGTAAGACCCACTGGCTCCAATCTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCAGCGTGACATGTTGGGGACAGTAAGACCCACTGGCTCCAATCTCT  450

seq1  GCAGTAAAGCCCTCAATGTGGCCAGATGGTGCAAAGCGTCCTCGAAGCAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAAAGCCCTCAATGTGGCCAGATGGTGCAAAGCGTCCTCGAAGCAG  500

seq1  TGATTCCTGGTATTAGGGTGGAGTAGACACATCTGAGAACGATGCCAAGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCCTGGTATTAGGGTGGAGTAGACACATCTGAGAACGATGCCAAGT  550

seq1  CTTTCCTTTGTTTTTTGAGGCACATTCCACCATTGAATTC  589
      ||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTTTGTTTTTTGAGGCACATTCCACCATTGAATTC  590