BAC Information

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BAC

Clone NameB6Ng01-067H08
Chromosome4 (Build37)
Map Location 120,092,733 - 120,229,226
singlet/doubletdoublet
Overlap geneScmh1, Slfnl1, Ctps
Upstream genePpcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a, Guca2b, Hivep3, Edn2, Foxo6
Downstream geneEG667063, Cited4, Kcnq4, Nfyc, Rims3, LOC626489, 3110037I16Rik, Zfp69, Smap1l, Col9a2, Zmpste24, Tmco2, LOC100042174, Rlf, OTTMUSG00000008911, EG666914, LOC666921
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-067H08.bB6Ng01-067H08.g
ACCDH886344DH886345
length1,1411,059
definitionDH886344|Mus musculus domesticus DNA, BAC clone: B6Ng01-067H08, 5' end.DH886345|Mus musculus domesticus DNA, BAC clone: B6Ng01-067H08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,092,733 - 120,093,898)(120,228,146 - 120,229,226)
sequence
gaattctctaaaattgatccaaaataaatattttctactcattagtaggt
tgtctcaggtatttgttagagtgacagaaaattgattaacatctaagtag
aagaatgaattgcttcagtaaatcaatcaagattctttctgcttgtggtg
gtgcccatgcaggtggtgcatgcatatggaggccagaggaagacctcagg
aatactgtccaccttatttctgagacaggttttcatggatttggagctcc
attgataggctaggctggccagctagctggcaccctgcagggcctcatcc
tgccttagccttccagtaactgctaaggttaccagttcacattaccatat
ctggcttatttttaaaaaattgggttctggggattacagcttgtttcatg
gcaagcactataccaactgagtcatttttttcagcttgaggttgattttt
gaatttgagaaaaatgtatgttcctttttagaagagtccatgttcatgtt
ttaatttctgtattctctcaacctttggtctggatatgctttctcatctc
aacctgtcacttacaaactctctaatgatacaaaggaggatgagctgttt
tttcccttagtgactttattacaattccctgcctggggtccttttgctct
ttcaggttagaagcagtggttaggcaaagcaaagctcaagtgttagtctt
tggcatggtgccagttggcatttgaccccagaggacaaggcagtaggcag
ggggagaagcagcagacagaaagtaccttctagtgttacagctttcctgc
aggcttcatgaagccaggcccttagctctacagtattccagctccctcat
tggcctgggaagtggagattccctagtccttggcagttgtcagttttaca
gctcctggcctgaggtgtctgagacctctggcttgttcctaagggcttgt
cagctctcaggactcttcagtgactaggggcctgcagcttctcgtctcag
ttctatattcttcagtctttgtcagctcactctgttccttttccttctgc
cattccctggtctgcctagaatgctctggaattcagtccctctgttacag
gacctttttcagtgcttcgctcaagagggactctgaagctt
gaattccaggacagccaaagctacacagagaaaccctgtcttgaaaaaaa
caaaacaaaacaaaaaaggatagcctgaaggagatcagaatgtgcaggca
aggcatttccagatgagagtatgtagagtttgttttactgctccatgact
gagggtcaggagacagcaggcaagcccagctaacctggtgaaaacagcaa
agcagaggccttaaaatgagagccgtccactagtgaaacttgaaggacat
tggtaaacagggcagttcatggcatacatggagcaaggggaaagttcctt
gacctttacagaagacttcttccatgaggaatcaggccttgggataaagg
catccagggctgagacgcctatgccagcggctccttcttaggttctgttt
tatactcaaaccactgagcatagaatgattttcactttttcacagtgacc
ctttattattttatttcaggtatttgggtctttataagtgaagagagggg
agattcctttctttagcagaattgactttcagaagaattaattctctgga
tgtggtggcatgtgcctttaatcccagcatttgggaggcagagacaggtg
gaatttgatgccaacttggtctacaaagctagtcctagaacacccaaaac
aaaacaaacaaaaccagaaaatgtagggaaaaaacccccaaaaacccaaa
gctgtaaaaactcttctgatttttcagaggtgagcacccccttagttagg
acagatttgaatctcagatcttttgcctgtcttaaacattggattttttt
gtcacgttttaagaggttagtttgaatgtgatctttttgtcaggtatgtg
atgtgcaatgttttctcagcctctagtttgcttttttaagctcttgggtg
tcccacaaaagcttttaaatgctcaattatttcttttgtgggtgtgctac
tttctgctattggaagtttgctaatcacatatgagatttataccagacaa
tctgagtgtgtctggttcgataagaataagtcatttttgggtgatatcca
ggtagcagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_120092733_120093898
seq2: B6Ng01-067H08.b_44_1184

seq1  GAATTCTCTAAAATTGATCCAAAATAAATATTTTCTACTCATTAGTAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAAAATTGATCCAAAATAAATATTTTCTACTCATTAGTAGGT  50

seq1  TGTCTCAGGTATTTGTTAGAGTGACAGAAAATTGATTAACATCTAAGTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCAGGTATTTGTTAGAGTGACAGAAAATTGATTAACATCTAAGTAG  100

seq1  AAGAATGAATTGCTTCAGTAAATCAATCAAGATTCTTTCTGCTTGTGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATGAATTGCTTCAGTAAATCAATCAAGATTCTTTCTGCTTGTGGTG  150

seq1  GTGCCCATGCAGGTGGTGCATGCATATGGAGGCCAGAGGAAGACCTCAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCCATGCAGGTGGTGCATGCATATGGAGGCCAGAGGAAGACCTCAGG  200

seq1  AATACTGTCCACCTTATTTCTGAGACAGGTTTTCATGGATTTGGAGCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGTCCACCTTATTTCTGAGACAGGTTTTCATGGATTTGGAGCTCC  250

seq1  ATTGATAGGCTAGGCTGGCCAGCTAGCTGGCACCCTGCAGGGCCTCATCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATAGGCTAGGCTGGCCAGCTAGCTGGCACCCTGCAGGGCCTCATCC  300

seq1  TGCCTTAGCCTTCCAGTAACTGCTAAGGTTACCAGTTCACATTACCATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTAGCCTTCCAGTAACTGCTAAGGTTACCAGTTCACATTACCATAT  350

seq1  CTGGCTTATTTTTAAAAAATTGGGTTCTGGGGATTACAGCTTGTTTCATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTATTTTTAAAAAATTGGGTTCTGGGGATTACAGCTTGTTTCATG  400

seq1  GCAAGCACTATACCAACTGAGTCATTTTTTTCAGCTTGAGGTTGATTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCACTATACCAACTGAGTCATTTTTTTCAGCTTGAGGTTGATTTTT  450

seq1  GAATTTGAGAAAAATGTATGTTCCTTTTTAGAAGAGTCCATGTTCATGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGAGAAAAATGTATGTTCCTTTTTAGAAGAGTCCATGTTCATGTT  500

seq1  TTAATTTCTGTATTCTCTCAACCTTTGGTCTGGATATGCTTTCTCATCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTCTGTATTCTCTCAACCTTTGGTCTGGATATGCTTTCTCATCTC  550

seq1  AACCTGTCACTTACAAACTCTCTAATGATACAAAGGAGGATGAGCTGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGTCACTTACAAACTCTCTAATGATACAAAGGAGGATGAGCTGTTT  600

seq1  TTTCCCTTAGTGACTTTATTACAATTCCCTGCCTGGGGTCCTTTTGCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTTAGTGACTTTATTACAATTCCCTGCCTGGGGTCCTTTTGCTCT  650

seq1  TTCAGGTTAGAAGCAGTGGTTAGGCAAAGCAAAGCTCAAGTGTTAGTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGGTTAGAAGCAGTGGTTAGGCAAAGCAAAGCTCAAGTGTTAGTCTT  700

seq1  TGGCATGGTGCCAGTTGGCATTTGACCCCAGAGGACAAGGCAGTAGGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATGGTGCCAGTTGGCATTTGACCCCAGAGGACAAGGCAGTAGGCAG  750

seq1  GGGGAGAAGCAGCAGACAGAAAGTACCTTCTAGTGTTACAGCTTTCCTGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGAAGCAGCAGACAGAAAGTACCTTCTAGTGTTACAGCTTTCCTGC  800

seq1  AGGCTTCAGGAAGCCAGGCCCTTAGCTCTACAGTATTCCAGCTCCCTCAT  850
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTCATGAAGCCAGGCCCTTAGCTCTACAGTATTCCAGCTCCCTCAT  850

seq1  TGGCCTGGGAAGTGGAGATTCCCTAGTCCTTGGCAGTTGTCAGTTTTACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTGGGAAGTGGAGATTCCCTAGTCCTTGGCAGTTGTCAGTTTTACA  900

seq1  GCTCCTGGCCTGAGGTGTCTGAGACCTCTGGCTTGTTCCTAAGGGCTTGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTGGCCTGAGGTGTCTGAGACCTCTGGCTTGTTCCTAAGGGCTTGT  950

seq1  CAGCTCTCAGGAACTCTTCAAGTGACTAGGGGGCCTGCAGCTTCTCGTCT  1000
      ||||||||||| ||||||| |||||||| |||||||||||||||||||||
seq2  CAGCTCTCAGG-ACTCTTC-AGTGACTA-GGGGCCTGCAGCTTCTCGTCT  997

seq1  CAGTTTCTTATATTCTTCAGTTCTTTGTCAGCCTCAACTCTGTTCTCTTT  1050
      |||||   |||||||||||| |||||||||| ||| ||||||||| ||||
seq2  CAGTT--CTATATTCTTCAG-TCTTTGTCAG-CTC-ACTCTGTTC-CTTT  1041

seq1  TCCTTTCTGCCATTCTCCCTGTGTCTGCCCTAGATGGCTTCTTGATTTTT  1100
      ||| |||||||||  |||||| ||||| ||||||  || ||| ||   ||
seq2  TCC-TTCTGCCAT--TCCCTG-GTCTG-CCTAGAATGC-TCTGGA--ATT  1083

seq1  CAGTTCCCTCTTGTTACTATGACCTCTTTTCAGTTGCTCCTGCTCAAGAG  1150
      ||| |||||| |||||| | ||||| ||||||| |||| | |||||||||
seq2  CAG-TCCCTC-TGTTAC-AGGACCT-TTTTCAG-TGCTTC-GCTCAAGAG  1127

seq1  GTGACTACTGATGCTT  1166
      | |||| |||| ||||
seq2  G-GACT-CTGAAGCTT  1141

seq1: chr4_120228146_120229226
seq2: B6Ng01-067H08.g_69_1127 (reverse)

seq1  GCTGCATACCTGGAAATACACACACAAAAAAATGACTTTTTACTCCTTAT  50
      ||||| |||||||| ||     |||  ||||||||||| ||    |||||
seq2  GCTGC-TACCTGGATAT-----CACCCAAAAATGACTTATT----CTTAT  40

seq1  CAAACACAGACACCAACTCAAGATGTGTCTGGTATAAATCTTCATTATTG  100
      | ||| |||||||  |||| |||| ||||||||||||||| ||||   ||
seq2  CGAAC-CAGACAC--ACTC-AGAT-TGTCTGGTATAAATC-TCAT--ATG  82

seq1  TGATTAAGCAAACTTCCCAAATAGCCAGAAAGTAGCACAACCCACAAAAG  150
      ||||| |||||||||||  ||||| ||||||||||||| |||||||||||
seq2  TGATT-AGCAAACTTCC--AATAG-CAGAAAGTAGCAC-ACCCACAAAAG  127

seq1  AAATAATTGAGCATTTAAAAGCTTTTGTGGGACA-CCAAGAGCTTAAAAA  199
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  AAATAATTGAGCATTTAAAAGCTTTTGTGGGACACCCAAGAGCTTAAAAA  177

seq1  AGCAAACTAGAGGCTGAGAAAACATTGCACATCACATACCTGACAAAAAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACTAGAGGCTGAGAAAACATTGCACATCACATACCTGACAAAAAG  227

seq1  ATCACATTCAAACTAACCTCTTAAAACGTGACAAAAAAATCCAATGTTTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACATTCAAACTAACCTCTTAAAACGTGACAAAAAAATCCAATGTTTA  277

seq1  AGACAGGCAAAAGATCTGAGATTCAAATCTGTCCTAACTAAGGGGGTGCT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGGCAAAAGATCTGAGATTCAAATCTGTCCTAACTAAGGGGGTGCT  327

seq1  CACCTCTGAAAAATCAGAAGAGTTTTTACAGCTTTGGGTTTTTGGGGGTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTGAAAAATCAGAAGAGTTTTTACAGCTTTGGGTTTTTGGGGGTT  377

seq1  TTTTCCCTACATTTTCTGGTTTTGTTTGTTTTGTTTTGGGTGTTCTAGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCTACATTTTCTGGTTTTGTTTGTTTTGTTTTGGGTGTTCTAGGA  427

seq1  CTAGCTTTGTAGACCAAGTTGGCATCAAATTCCACCTGTCTCTGCCTCCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCTTTGTAGACCAAGTTGGCATCAAATTCCACCTGTCTCTGCCTCCC  477

seq1  AAATGCTGGGATTAAAGGCACATGCCACCACATCCAGAGAATTAATTCTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCTGGGATTAAAGGCACATGCCACCACATCCAGAGAATTAATTCTT  527

seq1  CTGAAAGTCAATTCTGCTAAAGAAAGGAATCTCCCCTCTCTTCACTTATA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGTCAATTCTGCTAAAGAAAGGAATCTCCCCTCTCTTCACTTATA  577

seq1  AAGACCCAAATACCTGAAATAAAATAATAAAGGGTCACTGTGAAAAAGTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCCAAATACCTGAAATAAAATAATAAAGGGTCACTGTGAAAAAGTG  627

seq1  AAAATCATTCTATGCTCAGTGGTTTGAGTATAAAACAGAACCTAAGAAGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCATTCTATGCTCAGTGGTTTGAGTATAAAACAGAACCTAAGAAGG  677

seq1  AGCCGCTGGCATAGGCGTCTCAGCCCTGGATGCCTTTATCCCAAGGCCTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCGCTGGCATAGGCGTCTCAGCCCTGGATGCCTTTATCCCAAGGCCTG  727

seq1  ATTCCTCATGGAAGAAGTCTTCTGTAAAGGTCAAGGAACTTTCCCCTTGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTCATGGAAGAAGTCTTCTGTAAAGGTCAAGGAACTTTCCCCTTGC  777

seq1  TCCATGTATGCCATGAACTGCCCTGTTTACCAATGTCCTTCAAGTTTCAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGTATGCCATGAACTGCCCTGTTTACCAATGTCCTTCAAGTTTCAC  827

seq1  TAGTGGACGGCTCTCATTTTAAGGCCTCTGCTTTGCTGTTTTCACCAGGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGGACGGCTCTCATTTTAAGGCCTCTGCTTTGCTGTTTTCACCAGGT  877

seq1  TAGCTGGGCTTGCCTGCTGTCTCCTGACCCTCAGTCATGGAGCAGTAAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGGGCTTGCCTGCTGTCTCCTGACCCTCAGTCATGGAGCAGTAAAA  927

seq1  CAAACTCTACATACTCTCATCTGGAAATGCCTTGCCTGCACATTCTGATC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCTACATACTCTCATCTGGAAATGCCTTGCCTGCACATTCTGATC  977

seq1  TCCTTCAGGCTATCCTTTTTTGTTTTGTTTTGTTTTTTTCAAGACAGGGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCAGGCTATCCTTTTTTGTTTTGTTTTGTTTTTTTCAAGACAGGGT  1027

seq1  TTCTCTGTGTAGCTTTGGCTGTCCTGGAATTC  1081
      ||||||||||||||||||||||||||||||||
seq2  TTCTCTGTGTAGCTTTGGCTGTCCTGGAATTC  1059