BAC Information

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BAC

Clone NameB6Ng01-068M06
Chromosome4 (Build37)1 (Build37)
Map Location 39,054,601 - 39,055,47653,465,931 - 53,466,284
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100039448, LOC665520, LOC100039487
Downstream gene1700009N14Rik, LOC435775, LOC329824, LOC621880
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-068M06.bB6Ng01-068M06.g
ACCDH887258DH887259
length1,0171,001
definitionDH887258|Mus musculus domesticus DNA, BAC clone: B6Ng01-068M06, 5' end.DH887259|Mus musculus domesticus DNA, BAC clone: B6Ng01-068M06, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(39,054,601 - 39,055,476)(53,465,931 - 53,466,284)
sequence
gaattcaaaagaagtaagtatgaaagcaataattgaaatagaaaacatga
aaaaggtaagaggacagcataaggtgatcaaaataataattaaatgactt
tataataccctagagaaattaaagtgtattttaagttgatgtatgaataa
aaaaagtgtgaatattagtgatacaaaacaagtatgagacaacatgaaag
gacacatccttattgaaaagaaaacaaggttggctgcagggcagagcaaa
atcagtaacattctgggctcagaattttattataacaagttataaataac
aaagttattagagatgttttacataacttcaatgaaaaaaataattagat
attgattgatattataacacatgtctacttattgcagatatatgatacat
atatcatatatgtatgtgcatgattaaatatattaatacataaataagta
tattaatattatttaaaatttctttcatgcatacattttagggctgtcca
cttgggatggataattatttatagtgttcattcctagggcagacttcctt
atcaattagtgtggctgcatgttagtttttctattcattttgggatgtca
actggtgttgtaattgttcaggtcttctttaagcagcctcattgctgaga
ttttagtgtataactttctgtcatctcaagaagacacaatatctcatcag
acttccttgtcttctggctctttcagtcttttcataccatctttcactat
tattcctgattcttgaatgtagaagttatgttgtaaatctatcgttggag
ctgggcacctcacattcagaaggtctttgtattttgacaacaggactacc
ttttatagcattgtatggtgctatgcagctgacagggataaaaagtagtc
aataaatataactagctatgatgtctataaacaacagcataataagcaca
ggaagtatacctaaagtgaaatagtggcatttgtagcttgtgataccagt
agatgtcaattagactt
gaattcactttttaagtttttttatctttaaattttttcacatgactttc
ttttcagtcactattattttattaatgagctataggcatgtgtacaatga
ggaggaggaaaaagttatagatgaaaggactttgaaacttttctgggtca
taaatgacatgttgagactcacaggctaacaagaacaggtctttcagggt
gtactggctagttttgtgtcaacttgacacagctggagttaccacagaga
aaggagcttcagttgaggaaatgcctccatgagatacaactgtaaggcat
tttctcaattagtgatcaagggggaagggccccttgtgtgtgggaccatc
tctgggctggcaatcttggattctataagagagcaggctaagcaagccag
aggaggcaagctagtaaggaacatccctccatggtctctgcatcagctcc
tgctttctgacctgcctgagttccagtcctgacttcctttggtaataaac
agcagcatggaagtgtaagccgaataaaccctttcctccccagcttgctt
cttggtcatgatgtttgtgcaggaatagagaccctgactaagacaaattg
gtaccagcagagtggggtattcccgtgacaacctgaccatgttttgggga
ggactgtggaaggactttggaactttgggcttgaagatccatttgttgtt
aagagctctgtcagatgttgtatgggagcttggaagagaatgttgagaac
agtgcagaagatggagatctggtttgtgaaatttcagagggaaaattaaa
gactgttttcagggacattgctgttttaattgtgaagattctgtggttct
ggttagctggggctgaagaatcagccgtgattacaagataccagaactac
taaagcaaagtgtggcattactgggactattgatgctggttagctggagc
tagaaatagcggtgattaagagagaccatcatcattgaggtgacatcttc
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_39054601_39055476
seq2: B6Ng01-068M06.b_46_922

seq1  GAATTCAAAAGAAGTAAGTATGAAAGCAATAA-GGAAATAGAAAACATGA  49
      ||||||||||||||||||||||||||||||||  ||||||||||||||||
seq2  GAATTCAAAAGAAGTAAGTATGAAAGCAATAATTGAAATAGAAAACATGA  50

seq1  AAAAGGTAAGAGGACAGCATAAGGTGATCAAAATAATAATTAAATGACTT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTAAGAGGACAGCATAAGGTGATCAAAATAATAATTAAATGACTT  100

seq1  TATAATACCCTAGAGAAATTAAAGTGTATTTTAAGTTGATGTATGAATAA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATACCCTAGAGAAATTAAAGTGTATTTTAAGTTGATGTATGAATAA  150

seq1  AAAAAGTGTGAATATTAGTGATACAAAACAAGTATGAGACAACATGAAAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTGTGAATATTAGTGATACAAAACAAGTATGAGACAACATGAAAG  200

seq1  GACACATCCTTATTGAAAAGAAAACAAGGTTGGCTGCAGGGCAGAGCAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACATCCTTATTGAAAAGAAAACAAGGTTGGCTGCAGGGCAGAGCAAA  250

seq1  ATCAGTAACATTCTGGGCTCAGAATTTTATTATAACAAGTTATAAATAAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTAACATTCTGGGCTCAGAATTTTATTATAACAAGTTATAAATAAC  300

seq1  AAAGTTATTAGAGATGTTTTACATAACTTCAATGAAAAAAATAATTAGAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTATTAGAGATGTTTTACATAACTTCAATGAAAAAAATAATTAGAT  350

seq1  ATTGATTGATATTATAACACATGTCTACTTATTGCAGATATATGATACAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATTGATATTATAACACATGTCTACTTATTGCAGATATATGATACAT  400

seq1  ATATCATATATGTATGTGCATGATTAAATATATTAATACATAAATAAGTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATATATGTATGTGCATGATTAAATATATTAATACATAAATAAGTA  450

seq1  TATTAATATTATTTAAAATTTCTTTCATGCATACATTTTAGGGCTGTCCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATATTATTTAAAATTTCTTTCATGCATACATTTTAGGGCTGTCCA  500

seq1  CTTGGGATGGATAATTATTTATAGTGTTCATTCCTAGGGCAGACTTCCTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGATGGATAATTATTTATAGTGTTCATTCCTAGGGCAGACTTCCTT  550

seq1  ATCAATTAGTGTGGCTGCATGTTAGTTTTTCTATTCATTTTGGGATGTCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATTAGTGTGGCTGCATGTTAGTTTTTCTATTCATTTTGGGATGTCA  600

seq1  ACTGGTGTTGTAATTGTTCAGGTCTTCTTTAAGCAGCCTCATTGCTGAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGTGTTGTAATTGTTCAGGTCTTCTTTAAGCAGCCTCATTGCTGAGA  650

seq1  TTTTAGTGTATAACTTTCTGTCATCTCAAGAAGACACAATATCTCATCAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTGTATAACTTTCTGTCATCTCAAGAAGACACAATATCTCATCAG  700

seq1  ACTTCCTTGTCTTCTGGCTCTTTCAGTCTTTTCATACCATCTTTCACTAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTTGTCTTCTGGCTCTTTCAGTCTTTTCATACCATCTTTCACTAT  750

seq1  TATTCCTGATTCTTGAATGTAGAAGTTATGTTGTAAATCTATCGTTGGAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTGATTCTTGAATGTAGAAGTTATGTTGTAAATCTATCGTTGGAG  800

seq1  CTGGGCACCTCACATTCAGAAGGTCTTTGTATTTTGACAACAGGACTACC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCACCTCACATTCAGAAGGTCTTTGTATTTTGACAACAGGACTACC  850

seq1  TTTTATAGCATTGTATGGTGCTATGCA  876
      |||||||||||||||||||||||||||
seq2  TTTTATAGCATTGTATGGTGCTATGCA  877

seq1: chr1_53465931_53466284
seq2: B6Ng01-068M06.g_312_665

seq1  CACAGAGAAAGGAGTTTCAGTTGAGGAAATGCCTCCATGAGCTCCAACTG  50
      |||||||||||||| |||||||||||||||||||||||||| | ||||||
seq2  CACAGAGAAAGGAGCTTCAGTTGAGGAAATGCCTCCATGAGATACAACTG  50

seq1  TAAGGCATTTTCTCAATTAGTGATCAAGGGGGAAAGGCCCCTTGTGGGTG  100
      |||||||||||||||||||||||||||||||||| ||||||||||| |||
seq2  TAAGGCATTTTCTCAATTAGTGATCAAGGGGGAAGGGCCCCTTGTGTGTG  100

seq1  TTGCCATCCCTGGGCTGGTAGTCTTGGGTTCTATAAGAGAGCAGGCTGAG  150
         ||||| ||||||||| | |||||| ||||||||||||||||||| ||
seq2  GGACCATCTCTGGGCTGGCAATCTTGGATTCTATAAGAGAGCAGGCTAAG  150

seq1  CAAGCCAGGGGAGGCAAGCCAGTAAAGAACATCCCTCCATGGCATCTGCA  200
      |||||||| |||||||||| ||||| ||||||||||||||||  ||||||
seq2  CAAGCCAGAGGAGGCAAGCTAGTAAGGAACATCCCTCCATGGTCTCTGCA  200

seq1  TCAGCTCCTGCTTTCTGATCTGCTTGAGTTCCAGTCCTGACTTCCTTTGG  250
      |||||||||||||||||| |||| ||||||||||||||||||||||||||
seq2  TCAGCTCCTGCTTTCTGACCTGCCTGAGTTCCAGTCCTGACTTCCTTTGG  250

seq1  TGATGAACAGCAGTGTGGAAGTGTAAGCTGAATAAGCCCTTTCCTCCCCA  300
      | || ||||||||  ||||||||||||| |||||| ||||||||||||||
seq2  TAATAAACAGCAGCATGGAAGTGTAAGCCGAATAAACCCTTTCCTCCCCA  300

seq1  ACTTGCTTCTTGGTCATGATGCTTGTGCAGGAATAGAAACCCTGACTAAG  350
       |||||||||||||||||||| ||||||||||||||| ||||||||||||
seq2  GCTTGCTTCTTGGTCATGATGTTTGTGCAGGAATAGAGACCCTGACTAAG  350

seq1  ACAA  354
      ||||
seq2  ACAA  354