BAC Information

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BAC

Clone NameB6Ng01-069G10
Chromosome4 (Build37)
Map Location 18,748,324 - 18,938,918
singlet/doubletdoublet
Overlap geneLOC667251, LOC435772
Upstream geneMmp16
Downstream geneCngb3, LOC623122, Cpne3, LOC100040306, 2410005O16Rik, Wwp1, Slc7a13, Atp6v0d2, LOC667282, Ttpa
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-069G10.bB6Ng01-069G10.g
ACCDH887723DH887724
length1,149965
definitionDH887723|Mus musculus domesticus DNA, BAC clone: B6Ng01-069G10, 5' end.DH887724|Mus musculus domesticus DNA, BAC clone: B6Ng01-069G10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,748,324 - 18,749,499)(18,937,940 - 18,938,918)
sequence
gaattccaattgcatgaccagattaacatattaagtattctgaataataa
cccaatttcatttcattctagcgtgactcattgcaaaagcagaagtcaaa
gtgcaaagaacatagttctgtgcttcagttgtttctggcacatggaatct
ccactctaacatttagcaggcagagatgggtgcagaaataccaggtgatt
ccatttcagtaattatggtagtcataagagaattattgtttcctctcctt
tgtagtcttagaaagtcctgaggaggaacagctggaaaagtaatgtcaga
ttgatctgcaggatgtaattcaaaggatcccgctgttagccgatttcccc
aaagcagaatgccctcaagagttgacagattttcatgaaaatgtgtatgt
ggagctttaaagctcactaactgtgaaagaaatggcctatatctgagctc
actctacaaaaaaaataacagtttgtgggaagagatacatgatgcttctc
tttcattctaaaactgcagtgaaatgtaaaaatttttggttcttaaatta
atcttgtatttgtggaatgaaaccgataaactataaaatatataacacaa
cacaacacacacacacacactcacacactatgaaactgcattaaatgcta
cagtcgtgcatctatgactggttttaagattggccaataatttttctgtc
tctgtcaagtaggactagaagtagtacaatcagtatggtccatagcacag
agaactactatcatctattatatataacaggatataatatatcttcttgt
gtagaattaatttgtgtctttttaaatactttgtaagttcatgagctaaa
agcagttatgcagtgagattattttgataaacatataactcactttttgt
gaattttctggtattcaggaatttgtccttttcttctaagtatttaaata
tattgtcatggataatgatatagcctgtttagtctacaacatcatctgta
tgctttaaatattcatataagaatatcatttctctttttttaataaacct
ctagagttttatcacctcatttttcttttcagtactttacttataacatt
tctgctggtgggctgatctcatagtaaatatggttttgttaatttccta
gaattcacggttgtgggggatttacttacaatcatttatttctaaaatgc
agctccaccaagtcttttgaagcttacaataggcctctcgccttttcagg
tccctgatttcaatatttaatcctccagtactgagatagcagaaacatct
gcttagattttatggtttttggtttctattgctcctttctttcatggctt
ctgattctgtgtatcatcagactcttggagagaagactcagctaattgct
ctcacctttttcaatgttagtccctgcaactttttgttccttgcctgctt
tgggtgtcactgctacattcaacagtctgtcctactgttattattattat
ttttttagattgttgtttaaaattcacttctttttattcttggttggtgg
ttggagtttctatgaaatataaagttaatttattgagcaaagttgctttt
aaaaatttcatgtaatattttctctgtaaagaaaaacaaacaaaaaccca
acaaacaccaaaaaacgaaaacaacaacaacaaaaacaacaaaacccttt
cttccctgagagcatacactgtaataggaagctgttgtcaatgtaagtgg
tggtaattggttttaggaatgttggtaattttgttagttctttgctgctg
agttctgtggtatgcatagcgtatgaagcactctccatcctttctgaaga
cttttgtaaaggctgattcagtgagtttctacatcatttgtgaatacttt
gctgtgagtcccattttcctgtaatattccagttgtgctatacagatgtg
agatgtgaacactgatagctaaatgtgaattcagagtcacatttctaatt
tgaattgcagagtttaaaagtttaaaagtactttatttgagatgttgttt
cagggtctgatactaaaatcagtgtatattttactattgcaggcatatac
tttaagagaactaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_18748324_18749499
seq2: B6Ng01-069G10.b_46_1194

seq1  GAATTCCAATTGCATGACCAGATTAACATATTAAGTATTCTGAATAATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATTGCATGACCAGATTAACATATTAAGTATTCTGAATAATAA  50

seq1  CCCAATTTCATTTCATTCTAGCGTGACTCATTGCAAAAGCAGAAGTCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATTTCATTTCATTCTAGCGTGACTCATTGCAAAAGCAGAAGTCAAA  100

seq1  GTGCAAAGAACATAGTTCTGTGCTTCAGTTGTTTCTGGCACATGGAATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAAGAACATAGTTCTGTGCTTCAGTTGTTTCTGGCACATGGAATCT  150

seq1  CCACTCTAACATTTAGCAGGCAGAGATGGGTGCAGAAATACCAGGTGATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTAACATTTAGCAGGCAGAGATGGGTGCAGAAATACCAGGTGATT  200

seq1  CCATTTCAGTAATTATGGTAGTCATAAGAGAATTATTGTTTCCTCTCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCAGTAATTATGGTAGTCATAAGAGAATTATTGTTTCCTCTCCTT  250

seq1  TGTAGTCTTAGAAAGTCCTGAGGAGGAACAGCTGGAAAAGTAATGTCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTCTTAGAAAGTCCTGAGGAGGAACAGCTGGAAAAGTAATGTCAGA  300

seq1  TTGATCTGCAGGATGTAATTCAAAGGATCCCGCTGTTAGCCGATTTCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCTGCAGGATGTAATTCAAAGGATCCCGCTGTTAGCCGATTTCCCC  350

seq1  AAAGCAGAATGCCCTCAAGAGTTGACAGATTTTCATGAAAATGTGTATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGAATGCCCTCAAGAGTTGACAGATTTTCATGAAAATGTGTATGT  400

seq1  GGAGCTTTAAAGCTCACTAACTGTGAAAGAAATGGCCTATATCTGAGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTTTAAAGCTCACTAACTGTGAAAGAAATGGCCTATATCTGAGCTC  450

seq1  ACTCTACAAAAAAAATAACAGTTTGTGGGAAGAGATACATGATGCTTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTACAAAAAAAATAACAGTTTGTGGGAAGAGATACATGATGCTTCTC  500

seq1  TTTCATTCTAAAACTGCAGTGAAATGTAAAAATTTTTGGTTCTTAAATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTCTAAAACTGCAGTGAAATGTAAAAATTTTTGGTTCTTAAATTA  550

seq1  ATCTTGTATTTGTGGAATGAAACCGATAAACTATAAAATATATAACACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTGTATTTGTGGAATGAAACCGATAAACTATAAAATATATAACACAA  600

seq1  CACAACACACACACACACACTCACACACTATGAAACTGCATTAAATGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACACACACACACACACTCACACACTATGAAACTGCATTAAATGCTA  650

seq1  CAGTCGTGCATCTATGACTGGTTTTAAGATTGGCCAATAATTTTTCTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCGTGCATCTATGACTGGTTTTAAGATTGGCCAATAATTTTTCTGTC  700

seq1  TCTGTCAAGTAGGACTAGAAGTAGTACAATCAGTATGGTCCATAGCACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCAAGTAGGACTAGAAGTAGTACAATCAGTATGGTCCATAGCACAG  750

seq1  AGAACTACTATCATCTATTATATATAACAGGATATAATATATCTTCTTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTACTATCATCTATTATATATAACAGGATATAATATATCTTCTTGT  800

seq1  GTAGAATTAATTTGTGTCTTTTTAAATACTTTGTAAGTTCATGAGCTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAATTAATTTGTGTCTTTTTAAATACTTTGTAAGTTCATGAGCTAAA  850

seq1  AGCAGTTAATGCAGTGAGATTATTTTGATAAACAATATAACTCACTTTTT  900
      ||||||| ||||||||||||||||||||||||| ||||||||||||||||
seq2  AGCAGTT-ATGCAGTGAGATTATTTTGATAAAC-ATATAACTCACTTTTT  898

seq1  GTGAATTTTCTGGTATTCCAGGAATTTGTCCTTTTCTTCTAAGTATTTAA  950
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GTGAATTTTCTGGTATT-CAGGAATTTGTCCTTTTCTTCTAAGTATTTAA  947

seq1  ATATATTGTCATGGATAATGATAATAGCCTGTTTTAGTTTCTACAAACCA  1000
      |||||||||||||||||||||| |||||||| |||||  |||||||  ||
seq2  ATATATTGTCATGGATAATGAT-ATAGCCTG-TTTAG--TCTACAA--CA  991

seq1  TCATCTGTATGCTTTTAAAATATTCATATAAGAAATAATCATTTCTCTTT  1050
      |||||||||||||||  |||||||||||||||||   |||||||||||||
seq2  TCATCTGTATGCTTT--AAATATTCATATAAGAA--TATCATTTCTCTTT  1037

seq1  TTCTATATAAACCTCCTTAAGAGTTTTATCAACTTCATTTTTCTTTTCAG  1100
      || || |||||||||    ||||||||||| || ||||||||||||||||
seq2  TTTTA-ATAAACCTC---TAGAGTTTTATC-ACCTCATTTTTCTTTTCAG  1082

seq1  TTACCTTTTACTTTAATAACAATTTCTGCTGTTGGGCTGACTCCATATGT  1150
       |||  |||||||  ||||| |||||||||| ||||||||   ||||   
seq2  -TAC--TTTACTT--ATAAC-ATTTCTGCTGGTGGGCTGATCTCATA--G  1124

seq1  TAAATTATGTTTTGTTAATTTTCCTA  1176
      |||||   |||||||||| |||||||
seq2  TAAATATGGTTTTGTTAA-TTTCCTA  1149

seq1: chr4_18937940_18938918
seq2: B6Ng01-069G10.g_68_1032 (reverse)

seq1  TCTAGTCTTCTTTAAATGTATATGCCTGGCAAATAGTAAAAATTATAACA  50
      |||||  |||| | || |||||||||||   ||||||||||  ||| |||
seq2  TCTAG--TTCTCTTAAAGTATATGCCTG--CAATAGTAAAA--TAT-ACA  43

seq1  CTGATTTTATGTATCAAGAACACTGGAAACAAACATCTCAAAATAAAGTA  100
      ||||||||| ||||||   || || ||||| |||||||| ||||||||||
seq2  CTGATTTTA-GTATCA--GACCCT-GAAAC-AACATCTC-AAATAAAGTA  87

seq1  CTTTTTAAAACTTTTAAAACTCTGCAATTCAAATTAAGAAATGTGACTCT  150
      |||||  |||||||| ||||||||||||||||||| ||||||||||||||
seq2  CTTTT--AAACTTTT-AAACTCTGCAATTCAAATT-AGAAATGTGACTCT  133

seq1  GAATTCACATTTAGCTATCAGTGTTCACATCTCACATCTGTATAGCACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATTTAGCTATCAGTGTTCACATCTCACATCTGTATAGCACAA  183

seq1  CTGGAATATTACAGG-AAATGGGACTCACAGCAAAGTATTCACAAATGAT  249
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTGGAATATTACAGGAAAATGGGACTCACAGCAAAGTATTCACAAATGAT  233

seq1  GTAGAAACTCACTGAATCAGCCTTTAC-AAAGTCTTCAGAAAGGATGGAG  298
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GTAGAAACTCACTGAATCAGCCTTTACAAAAGTCTTCAGAAAGGATGGAG  283

seq1  AGTGCTTCATACGCTATGCATACCACAGAACTCAGCAGC-AAGAACTAAC  347
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AGTGCTTCATACGCTATGCATACCACAGAACTCAGCAGCAAAGAACTAAC  333

seq1  AAAATTACCAACATTCCTAAAACCAATTACCACCACTTACATTGACAACA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTACCAACATTCCTAAAACCAATTACCACCACTTACATTGACAACA  383

seq1  GCTTCCTATTACAGTGTATGCTCTCAGGGAAGAAAGGGTTTTGTTGTTTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCCTATTACAGTGTATGCTCTCAGGGAAGAAAGGGTTTTGTTGTTTT  433

seq1  TGTTGTTGTTGTTTTCGTTTTTTGGTGTTTGTTGGGTTTTTGTTTGTTTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTTGTTGTTTTCGTTTTTTGGTGTTTGTTGGGTTTTTGTTTGTTTT  483

seq1  TCTTTACAGAGAAAATATTACATGAAATTTTTAAAAGCAACTTTGCTCAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTACAGAGAAAATATTACATGAAATTTTTAAAAGCAACTTTGCTCAA  533

seq1  TAAATTAACTTTATATTTCATAGAAACTCCAACCACCAACCAAGAATAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTAACTTTATATTTCATAGAAACTCCAACCACCAACCAAGAATAAA  583

seq1  AAGAAGTGAATTTTAAACAACAATCTAAAAAAATAATAATAATAACAGTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGTGAATTTTAAACAACAATCTAAAAAAATAATAATAATAACAGTA  633

seq1  GGACAGACTGTTGAATGTAGCAGTGACACCCAAAGCAGGCAAGGAACAAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGACTGTTGAATGTAGCAGTGACACCCAAAGCAGGCAAGGAACAAA  683

seq1  AAGTTGCAGGGACTAACATTGAAAAAGGTGAGAGCAATTAGCTGAGTCTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGCAGGGACTAACATTGAAAAAGGTGAGAGCAATTAGCTGAGTCTT  733

seq1  CTCTCCAAGAGTCTGATGATACACAGAATCAGAAGCCATGAAAGAAAGGA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCAAGAGTCTGATGATACACAGAATCAGAAGCCATGAAAGAAAGGA  783

seq1  GCAATAGAAACCAAAAACCATAAAATCTAAGCAGATGTTTCTGCTATCTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAGAAACCAAAAACCATAAAATCTAAGCAGATGTTTCTGCTATCTC  833

seq1  AGTACTGGAGGATTAAATATTGAAATCAGGGACCTGAAAAGGCGAGAGGC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTGGAGGATTAAATATTGAAATCAGGGACCTGAAAAGGCGAGAGGC  883

seq1  CTATTGTAAGCTTCAAAAGACTTGGTGGAGCTGCATTTTAGAAATAAATG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTGTAAGCTTCAAAAGACTTGGTGGAGCTGCATTTTAGAAATAAATG  933

seq1  ATTGTAAGTAAATCCCCCACAACCGTGAATTC  979
      ||||||||||||||||||||||||||||||||
seq2  ATTGTAAGTAAATCCCCCACAACCGTGAATTC  965