BAC Information

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BAC

Clone NameB6Ng01-070B05
Chromosome4 (Build37)
Map Location 3,177,943 - 3,179,234
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039124, LOC100039141, EG666464
Downstream geneLOC100039044, LOC631371, LOC666513, Tmem68, Tgs1, Lyn, LOC621858, Rps20, Mos, Plag1, Chchd7, LOC666586, Rdhe2, 4833413O15Rik, Penk1, A830012C17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-070B05.bB6Ng01-070B05.g
ACCDH888187DH888188
length1,2731,225
definitionDH888187|Mus musculus domesticus DNA, BAC clone: B6Ng01-070B05, 5' end.DH888188|Mus musculus domesticus DNA, BAC clone: B6Ng01-070B05, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcacttttctctttcccacctgccagtatgttgaagcccttgttgt
gtattttgggaaacaccctgagtcatcattagggaggtcgaagcattctc
ttggggtttgtattctggcctggagcttgtgctccagatttcacaaagct
gttggacatgcaggtcacaacatcataggcatcttcatcctgtgctctga
tttgcattcgcttccatttgaggtaagtaggaggttaaatatccaatttt
cagactttcctttcttttttgtaatcaataacgaccaagtcttataatgt
ctgttttgtctaaactcttccctgaagttatccaatagctagcacatctg
tagttttatattttttattattttataatcatcagataattcattaattt
attagttgtggttcttcagaacttctgaaataactacttgttaagcctct
gtacatgtggaaaccaaattatgcccctgccagagtccaaagaataaagc
tatagagttttttggcttttttccaagggagcacagcagtgtgaatccat
gagtgcatgtgacataaaacaagtccctacatatgtgttgcctccatgag
aactgctgtttggcatgataagcttcttctaaatccactgtgctgtgata
gtgtgactaaactgtgtacatatgttacatttttatcacaggctctttgt
atctgataataaggctggctgagtgcagtggttcagagtaggatgaaagc
tgagttgttcaaacagacataactacatataatctgcacacaacctctcc
tctatttttttctaattttaaccccattctcttgttttctaaatagaaag
aaatcctgtcctctgcttaaaccccagctagtcaaatctgttaccttaga
agacacttctgggacagtacccccctgtgatggttaaatctgtttgtcac
tttaagtagtttgaaatacacttgtgaagggaatttccagaaacactggg
aacatggctcaggaaggagtggggatggtggcctacttccacagcagcat
cttttggatggagtggatacagaaagagtggagaagcttgccagaagtcc
taagtttgttcacctgcactgggggttgaatctgctgcttcctcaccaag
acacagacttgagttgtagcatggtctcggacttctgatcatcccacttt
cagcttccattaatggaactgcaattcgcctctttttcgagtctgaacct
gaacaagagtgctgtgatttagc
gaattcctgatctttccaagacttttatcacaaatgggtgttggattttg
tcaaatgttttttctgcatataatgagatcaacatgtggtttttgtcttt
gagtttctttatatagtgtattactttgatggatttccatacacaaaacc
atccctgcatccctggaatggaaccgacttggtcaggatggatgattgta
tggatgtgttcttggattctgttagtgagaattttattgtgtatatttgc
atcaatattgttgagggaaattggtctgaagtgctctatctttgttgggg
ttttctgtggtttaggtatcagagtaagtgtgccttcatagaatgagttg
ggtagagtaccttctacttctattttgtgaaatagtttgtgcagaactgg
aattagatcttctttgaaggtctgatagaactctgcactaaacccgtctg
gtcctgggctttttttggctgggagactattaataactgcttctatttct
ttaggtgatatgggactgtttagatggtcaacttgatcctgattcaactt
tggtacctggtatctgtccagaaatttgtccatttcgtccaggttttcca
gttttgttgagtataaccttttgtagaaggatctgatggtgttttggatt
tcttcagaatctgttgttatgtctcccttttcatttctgattttgttaat
taggattttgtccctgtgccctttagtgagtctagctaagggtttatcta
tcttgttgattttctcaaagaaccaactcctcgtttggtttggttaattc
tttgaagagttcttcttgtttccacttagttgatttcatccctgagtttg
attatttcctgccatctactcctcttgggtgaatttcttccttttttcta
gagctttagatgtgttgtcaagctgctagtatgtgcacttctcccgtttc
ttcttggaggccctcagagctatgagtttccctctaaaaatgctttcttt
gtggtcccaaagggttggtacatgtggcttccttttcataaacctccaaa
aagtcttaatttctttccttaatcctttcctgacaaggatctttgagaag
aagggtggtcactttccatgtaaaggttgctcccatatttagtttgttat
gagaacgtctaggcagtcggtctgcagagagaccatgggtcattaaattt
ttgaatctctcgtttaaggcgcggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_3177943_3179234
seq2: B6Ng01-070B05.b_45_1317 (reverse)

seq1  GCTAAATCACAGCAACTC-TGTTCAAGGTTCAGGAAACCTCAGAAAAAGA  49
      ||||||||||||| |||| ||||| ||||||||     ||| ||||||| 
seq2  GCTAAATCACAGC-ACTCTTGTTC-AGGTTCAG----ACTC-GAAAAAG-  42

seq1  CAGGCTGGAATTGCAGTACCAATTTATAGTGAAGCCTGAAAGTTGGGGAT  99
       ||||  |||||||||| |||  ||| |  |||| ||||||||  |||||
seq2  -AGGC--GAATTGCAGTTCCA--TTA-ATGGAAG-CTGAAAGT--GGGAT  83

seq1  GGGATCAGAAGTCTGAGACCATGCTACATACTCAAGTCTGTTGTCTATGG  149
        ||||||||||| |||||||||||||| ||||||||||| ||||  | |
seq2  --GATCAGAAGTCCGAGACCATGCTACA-ACTCAAGTCTG-TGTC--TTG  127

seq1  GTGATGGAGCAGCAGATTCATACCCCAGTGCAGGTGAACAGAACTTA-GA  198
      |||| | |||||||||||||  |||||||||||||||||| |||||| ||
seq2  GTGAGGAAGCAGCAGATTCAACCCCCAGTGCAGGTGAACA-AACTTAGGA  176

seq1  CTTCTGTGCAAGCTTCTCCACTCTTTCTGTATCCACTCCATCC-AAAGAT  247
      |||||| |||||||||||||||||||||||||||||||||||| ||||||
seq2  CTTCTG-GCAAGCTTCTCCACTCTTTCTGTATCCACTCCATCCAAAAGAT  225

seq1  GCTGCCTGT-GAAGTAGG-CACCAT-CCCACTCCTTCCTGAGCCATGTTC  294
      |||| |||| |||||||| |||||| ||||||||||||||||||||||||
seq2  GCTG-CTGTGGAAGTAGGCCACCATCCCCACTCCTTCCTGAGCCATGTTC  274

seq1  CAGTTGTTTCTGGAAATTCCC-TCACAAGTGTATTTCAAACTACTTAAAG  343
      |   ||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CCAGTGTTTCTGGAAATTCCCTTCACAAGTGTATTTCAAACTACTTAAAG  324

seq1  TGACAAACAGATTTAACCATCACAGGGGGGTACTGTCCCAGAAGTGTCTT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAACAGATTTAACCATCACAGGGGGGTACTGTCCCAGAAGTGTCTT  374

seq1  CTAAGGTAACAGATTTGACTAGCTGGGGTTTAAGCAGAGGACAGGATTTC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGTAACAGATTTGACTAGCTGGGGTTTAAGCAGAGGACAGGATTTC  424

seq1  TTTCTATTTAGAAAACAAGAGAATGGGGTTAAAATTAGAAAAAAATAGAG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATTTAGAAAACAAGAGAATGGGGTTAAAATTAGAAAAAAATAGAG  474

seq1  GAGAGGTTGTGTGCAGATTATATGTAGTTATGTCTGTTTGAACAACTCAG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGTTGTGTGCAGATTATATGTAGTTATGTCTGTTTGAACAACTCAG  524

seq1  CTTTCATCCTACTCTGAACCACTGCACTCAGCCAGCCTTATTATCAGATA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATCCTACTCTGAACCACTGCACTCAGCCAGCCTTATTATCAGATA  574

seq1  CAAAGAGCCTGTGATAAAAATGTAACATATGTACACAGTTTAGTCACACT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGCCTGTGATAAAAATGTAACATATGTACACAGTTTAGTCACACT  624

seq1  ATCACAGCACAGTGGATTTAGAAGAAGCTTATCATGCCAAACAGCAGTTC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGCACAGTGGATTTAGAAGAAGCTTATCATGCCAAACAGCAGTTC  674

seq1  TCATGGAGGCAACACATATGTAGGGACTTGTTTTATGTCACATGCACTCA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGAGGCAACACATATGTAGGGACTTGTTTTATGTCACATGCACTCA  724

seq1  TGGATTCACACTGCTGTGCTCCCTTGGAAAAAAGCCAAAAAACTCTATAG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTCACACTGCTGTGCTCCCTTGGAAAAAAGCCAAAAAACTCTATAG  774

seq1  CTTTATTCTTTGGACTCTGGCAGGGGCATAATTTGGTTTCCACATGTACA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTCTTTGGACTCTGGCAGGGGCATAATTTGGTTTCCACATGTACA  824

seq1  GAGGCTTAACAAGTAGTTATTTCAGAAGTTCTGAAGAACCACAACTAATA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTTAACAAGTAGTTATTTCAGAAGTTCTGAAGAACCACAACTAATA  874

seq1  AATTAATGAATTATCTGATGATTATAAAATAATAAAAAATATAAAACTAC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATGAATTATCTGATGATTATAAAATAATAAAAAATATAAAACTAC  924

seq1  AGATGTGCTAGCTATTGGATAACTTCAGGGAAGAGTTTAGACAAAACAGA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTGCTAGCTATTGGATAACTTCAGGGAAGAGTTTAGACAAAACAGA  974

seq1  CATTATAAGACTTGGTCGTTATTGATTACAAAAAAGAAAGGAAAGTCTGA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATAAGACTTGGTCGTTATTGATTACAAAAAAGAAAGGAAAGTCTGA  1024

seq1  AAATTGGATATTTAACCTCCTACTTACCTCAAATGGAAGCGAATGCAAAT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGGATATTTAACCTCCTACTTACCTCAAATGGAAGCGAATGCAAAT  1074

seq1  CAGAGCACAGGATGAAGATGCCTATGATGTTGTGACCTGCATGTCCAACA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCACAGGATGAAGATGCCTATGATGTTGTGACCTGCATGTCCAACA  1124

seq1  GCTTTGTGAAATCTGGAGCACAAGCTCCAGGCCAGAATACAAACCCCAAG  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGTGAAATCTGGAGCACAAGCTCCAGGCCAGAATACAAACCCCAAG  1174

seq1  AGAATGCTTCGACCTCCCTAATGATGACTCAGGGTGTTTCCCAAAATACA  1243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGCTTCGACCTCCCTAATGATGACTCAGGGTGTTTCCCAAAATACA  1224

seq1  CAACAAGGGCTTCAACATACTGGCAGGTGGGAAAGAGAAAAGTGAATTC  1292
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGGGCTTCAACATACTGGCAGGTGGGAAAGAGAAAAGTGAATTC  1273