BAC Information

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BAC

Clone NameB6Ng01-071L06
Chromosome4 (Build37)
Map Location 124,741,390 - 124,880,222
singlet/doubletdoublet
Overlap geneDnali1, Snip1, 2310005N01Rik, Zc3h12a
Upstream gene1700057H15Rik, LOC100039332, Pou3f1, Utp11l, Fhl3, Sf3a3, LOC664991, Inpp5b, LOC100039433, Mtf1, Yrdc, Gm50, Epha10, Cdca8, 9930104L06Rik, Rspo1, Gnl2
Downstream geneLOC100039298, Grik3, Ftl2, Csf3r, Mrps15, 1810007P19Rik, LOC100039645, Lsm10, Stk40, 2610027C15Rik, 1700029G01Rik, Thrap3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-071L06.bB6Ng01-071L06.g
ACCDH889328DH889329
length1,2421,155
definitionDH889328|Mus musculus domesticus DNA, BAC clone: B6Ng01-071L06, 5' end.DH889329|Mus musculus domesticus DNA, BAC clone: B6Ng01-071L06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(124,741,390 - 124,742,650)(124,879,061 - 124,880,222)
sequence
gaattctgtgctggaggaatacccgaattctgcagtgacagacttgtggg
cagaacggcaagagagggagaaacttctaagttggtgggagaggatccac
tagtaaatgacacctctctctcttggcctccatctctggagaagttcaca
ggttctcagtggttctcattggtgtgggcatgcataagactattaggtgg
agggtttttgagagttctagctaggctgtgtagcccaggctagcttcaaa
ctctgatcctcctgcctctgcctcctgagctcactgggccttgccttgtt
agacatttatgggcttttgcgacacaactttgcatgtggcgctagccggc
ctagtactccctttgtagtccaggctggtcttgactttgaggcaattctc
ctatgtcctgcagagtgctgggattaagcacatgccggcacaccaggctc
tctatgaggactcttgatggagggaccaaagaatggagtttagaaggaag
aggactggtctagaagacctatatgttaaagcagacatctaaagtcagaa
gagtgctcagaacgtggagggcatggatttagagggtacctgcttggctg
caaacatacaaccatactgagaccccatgaactccagaaagctgagagga
aacccaaggtagggcacaggaagacacctatgttctggaccaagagctta
gaccttcccctagtcactgtgggctccccaccaccatctctctctctacc
ttggaggcaggatggcatttaagatttcttctgcctgtttggtaggatct
gggacacaggaagttgagggcagcttggccttgggtggctgtgggcttgt
actagagggtccaggctgctggatggtgactttcagtggccgagcctaag
aagagacaagttgatcagtctagtacctccagattttcctaggtctcttg
tacagccgtccccatttccagcctatttccctcatctgtgatcttaaagg
aaatatgagctgaaatttccacgagggatatctggctctgaccctgtgtt
gaactggtgtttctagaatgagtggtcaagctctgttctgactctataga
cgaaagtaagtcactaccagaacctcttctggacttgactaccacaaacc
ctctttcatgtgaactttttcactaaattggttccttaagtcatagctag
cttatttctcttcccaacgccatcctgttccaattccttggc
gaattcacccttgggtcaaagctggtaagaaaaaacattgtagaatctca
agctaaggttcaccgaaccacagcacccagcaagcgacagtgccatgtgc
cagtaatcgaaatattagataaagaagtgaagataagatcaggagttcag
ggccagcctcagctacacagtgtattcaaggacagcctgggctacatgag
acactgtctaaaaaaacaaagcacagtgaaacaacaacagcatctttgtc
acccaggaacttgctagaaatgcccagccccagactctgccacagcctgg
gttcaacaagactttcctaacacagggctcagcaacctggatttgacacc
ctttagataattctcattctggcaaaagtctgaacaccactaacctaagc
cagaagtcagccatcttttttcctaaagatttattactattatactatta
ttattattattattattattattattttaagaatgcatgtgcatgtctgt
ccctttatgggtatatgcccatgggatcacaagtacctgcagagcccaga
agagggcataagattccctggagttggaattacagtcctttgtgagccac
tggatgtgggtataaggaagagaaaccctggtcccctgtaatagtagatt
gagctcttaaccactgaaccatccctccagcccccgtctttttttctata
aaggataagatagtaaatatgtcatgatctgcagccttgttctgctgcaa
tctctgtcagcactgctccagataccgggaggaggtggatcagctacaaa
caatacatgcatatgcaaatgttggctatggccaagatccaacacaaaca
ttgctaaccacagcaggcaggctagacttgcagactcttcttgctggctc
tggcccaaggcgaaaggtccccgtgtccccatgtttagtttttcaagttc
gaaagttccaggtagagccaagggaagtaaaattcaagctatgtataatt
tgctttctcagaaaatttcatctatcaaatgtgtaatcctcatctgcacc
aggcgctcgattgcagaattgatatgtactcacaaccttccaaagtgtag
gtcagtcagcttgagtcttcctggcaggaaggaggtggctcttgcacgta
aggct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_124741390_124742650
seq2: B6Ng01-071L06.b_46_1287

seq1  GAATTCTGTGCTGGAGGAATACCCGAATTCTGCAGTGACAGACTTGTGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGCTGGAGGAATACCCGAATTCTGCAGTGACAGACTTGTGGG  50

seq1  CAGAACGGCAAGAGAGGGAGAAACTTCTAAGTTGGTGGGAGAGGATCCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACGGCAAGAGAGGGAGAAACTTCTAAGTTGGTGGGAGAGGATCCAC  100

seq1  TAGTAAATGACACCTCTCTCTCTTGGCCTCCATCTCTGGAGAAGTTCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAAATGACACCTCTCTCTCTTGGCCTCCATCTCTGGAGAAGTTCACA  150

seq1  GGTTCTCAGTGGTTCTCATTGGTGTGGGCATGCATAAGACTATTAGGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTCAGTGGTTCTCATTGGTGTGGGCATGCATAAGACTATTAGGTGG  200

seq1  AGGGTTTTTGAGAGTTCTAGCTAGGCTGTGTAGCCCAGGCTAGCTTCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTTTGAGAGTTCTAGCTAGGCTGTGTAGCCCAGGCTAGCTTCAAA  250

seq1  CTCTGATCCTCCTGCCTCTGCCTCCTGAGCTCACTGGGCCTTGCCTTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATCCTCCTGCCTCTGCCTCCTGAGCTCACTGGGCCTTGCCTTGTT  300

seq1  AGACATTTATGGGCTTTTGCGACACAACTTTGCATGTGGCGCTAGCCGGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTTATGGGCTTTTGCGACACAACTTTGCATGTGGCGCTAGCCGGC  350

seq1  CTAGTACTCCCTTTGTAGTCCAGGCTGGTCTTGACTTTGAGGCAATTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTACTCCCTTTGTAGTCCAGGCTGGTCTTGACTTTGAGGCAATTCTC  400

seq1  CTATGTCCTGCAGAGTGCTGGGATTAAGCACATGCCGGCACACCAGGCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTCCTGCAGAGTGCTGGGATTAAGCACATGCCGGCACACCAGGCTC  450

seq1  TCTATGAGGACTCTTGATGGAGGGACCAAAGAATGGAGTTTAGAAGGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGAGGACTCTTGATGGAGGGACCAAAGAATGGAGTTTAGAAGGAAG  500

seq1  AGGACTGGTCTAGAAGACCTATATGTTAAAGCAGACATCTAAAGTCAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTGGTCTAGAAGACCTATATGTTAAAGCAGACATCTAAAGTCAGAA  550

seq1  GAGTGCTCAGAACGTGGAGGGCATGGATTTAGAGGGTACCTGCTTGGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGCTCAGAACGTGGAGGGCATGGATTTAGAGGGTACCTGCTTGGCTG  600

seq1  CAAACATACAACCATACTGAGACCCCATGAACTCCAGAAAGCTGAGAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATACAACCATACTGAGACCCCATGAACTCCAGAAAGCTGAGAGGA  650

seq1  AACCCAAGGTAGGGCACAGGAAGACACCTATGTTCTGGACCAAGAGCTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAAGGTAGGGCACAGGAAGACACCTATGTTCTGGACCAAGAGCTTA  700

seq1  GACCTTCCCCTAGTCACTGTGGGCTCCCCACCACCATCTCTCTCTCTACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTCCCCTAGTCACTGTGGGCTCCCCACCACCATCTCTCTCTCTACC  750

seq1  TTGGAGGCAGGATGGCATTTAAGATTTCTTCTGCCTGTTTGGTAGGATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGGCAGGATGGCATTTAAGATTTCTTCTGCCTGTTTGGTAGGATCT  800

seq1  GGGACACAGGAAGTTGAGGGCAGCTTGGCCTTGGGTGGCTGTGGGCTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACACAGGAAGTTGAGGGCAGCTTGGCCTTGGGTGGCTGTGGGCTTGT  850

seq1  ACTAGAGGGTCCAGGCTGCTGGATGGTGACTTTCAGTGGCCGAGCCTAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGAGGGTCCAGGCTGCTGGATGGTGACTTTCAGTGGCCGAGCCTAAG  900

seq1  AAGAGACAGGTTGATCAGTCTAGTACCTCCAGATTTTCCTAGGTCTCTTG  950
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACAAGTTGATCAGTCTAGTACCTCCAGATTTTCCTAGGTCTCTTG  950

seq1  TACAGCCGTCCCCATTTCCAGCCTATTTCCCTCATCTGTGATCTTAAAGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGCCGTCCCCATTTCCAGCCTATTTCCCTCATCTGTGATCTTAAAGG  1000

seq1  AAATATGAGCTGGAGATATCCCACGAGGGATATCTGGCTCTGACCCTGTG  1050
      ||||||||||| || || | ||||||||||||||||||||||||||||||
seq2  AAATATGAGCT-GAAAT-TTCCACGAGGGATATCTGGCTCTGACCCTGTG  1048

seq1  TTTGAACTGGTGTTTCTAGAATGAGTGGTCAGGCCTCTGTTCTGACTCTC  1100
       |||||||||||||||||||||||||||||| | ||||||||||||||| 
seq2  -TTGAACTGGTGTTTCTAGAATGAGTGGTCAAG-CTCTGTTCTGACTCTA  1096

seq1  TAGACGAAGGTAAGTCACTACCAG-ACCTCTTCTTGGACTTGACTACCAC  1149
      |||||||| ||||||||||||||| |||||||| ||||||||||||||||
seq2  TAGACGAAAGTAAGTCACTACCAGAACCTCTTC-TGGACTTGACTACCAC  1145

seq1  AAACCCCATCTTTTCCATGTGACTTTTCTCATCTTAAATTTGTCCTCTAA  1199
      ||||||  |||||  |||||||  ||| |||   |||||| || | || |
seq2  AAACCC--TCTTT--CATGTGAACTTTTTCA--CTAAATTGGTTC-CTTA  1188

seq1  GGTCATAGCTAGGCTTCTTGTTCTCTTCTCCCAACCTCCATCCCTGTCCC  1249
       |||||||||| |||| |  ||||||  |||||| | |||| ||||| ||
seq2  AGTCATAGCTA-GCTTAT--TTCTCT--TCCCAA-CGCCAT-CCTGTTCC  1231

seq1  AATTCCCTTGGC  1261
      |||| |||||||
seq2  AATT-CCTTGGC  1242

seq1: chr4_124879061_124880222
seq2: B6Ng01-071L06.g_65_1219 (reverse)

seq1  AGCCTCACGTGCAAGAGCCACCTCCTTCCTGCCAGG-AGACTC-AGCTGA  48
      ||||| |||||||||||||||||||||||||||||| |||||| ||||||
seq2  AGCCTTACGTGCAAGAGCCACCTCCTTCCTGCCAGGAAGACTCAAGCTGA  50

seq1  CTGACTTCCACTTTTGGAAGGTTGTGAGTACATTATCATTTCTGCATATC  98
      ||||| | ||| |||||||||||||||||||| ||||| ||||||| |||
seq2  CTGACCTACAC-TTTGGAAGGTTGTGAGTACA-TATCAATTCTGCA-ATC  97

seq1  GAGCGCCTGGTGCAGATGAGGTATTTACACATTTGAATAGATGAAATTTT  148
      |||||||||||||||||||||   ||||||||||| |||||||||| |||
seq2  GAGCGCCTGGTGCAGATGAGG--ATTACACATTTG-ATAGATGAAA-TTT  143

seq1  TATGAGAAAAGAAATTTATACATAGCCTTGAAATTTTACTTCCCTTGGCT  198
      | |||| |||| || |||||||||| |||| |||||||||||||||||||
seq2  TCTGAG-AAAGCAAATTATACATAG-CTTG-AATTTTACTTCCCTTGGCT  190

seq1  CTACCTGGAACTTTCGAACTTGAAAAACTAAACATGGGGACACGGGGACC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTGGAACTTTCGAACTTGAAAAACTAAACATGGGGACACGGGGACC  240

seq1  TTTCGCC-TGGGCCAGAGCCAGCAAGAAGAGTCTGCAAGTCTAGCCTGCC  297
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGCCTTGGGCCAGAGCCAGCAAGAAGAGTCTGCAAGTCTAGCCTGCC  290

seq1  TGCTGTGGTTAGCAATGTTTGTGTTGGATCTTGGCCATAGCCAACATTTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGGTTAGCAATGTTTGTGTTGGATCTTGGCCATAGCCAACATTTG  340

seq1  CATATGCATGTATTGTTTGTAGCTGATCCACCTCCTCCCGGTATCTGGAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGCATGTATTGTTTGTAGCTGATCCACCTCCTCCCGGTATCTGGAG  390

seq1  CAGTGCTGACAGAGATTGCAGCAGAACAAGGCTGCAGATCATGACATATT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGCTGACAGAGATTGCAGCAGAACAAGGCTGCAGATCATGACATATT  440

seq1  TACTATCTTATCCTTTATAGAAAAAAAGACGGGGGCTGGAGGGATGGTTC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATCTTATCCTTTATAGAAAAAAAGACGGGGGCTGGAGGGATGGTTC  490

seq1  AGTGGTTAAGAGCTCAATCTACTATTACAGGGGACCAGGGTTTCTCTTCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTTAAGAGCTCAATCTACTATTACAGGGGACCAGGGTTTCTCTTCC  540

seq1  TTATACCCACATCCAGTGGCTCACAAAGGACTGTAATTCCAACTCCAGGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACCCACATCCAGTGGCTCACAAAGGACTGTAATTCCAACTCCAGGG  590

seq1  AATCTTATGCCCTCTTCTGGGCTCTGCAGGTACTTGTGATCCCATGGGCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTATGCCCTCTTCTGGGCTCTGCAGGTACTTGTGATCCCATGGGCA  640

seq1  TATACCCATAAAGGGACAGACATGCACATGCATTCTTAAAATAATAATAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCCATAAAGGGACAGACATGCACATGCATTCTTAAAATAATAATAA  690

seq1  TAATAATAATAATAATAATAGTATAATAGTAATAAATCTTTAGGAAAAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATAATAATAATAATAGTATAATAGTAATAAATCTTTAGGAAAAAA  740

seq1  GATGGCTGACTTCTGGCTTAGGTTAGTGGTGTTCAGACTTTTGCCAGAAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTGACTTCTGGCTTAGGTTAGTGGTGTTCAGACTTTTGCCAGAAT  790

seq1  GAGAATTATCTAAAGGGTGTCAAATCCAGGTTGCTGAGCCCTGTGTTAGG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATTATCTAAAGGGTGTCAAATCCAGGTTGCTGAGCCCTGTGTTAGG  840

seq1  AAAGTCTTGTTGAACCCAGGCTGTGGCAGAGTCTGGGGCTGGGCATTTCT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTTGTTGAACCCAGGCTGTGGCAGAGTCTGGGGCTGGGCATTTCT  890

seq1  AGCAAGTTCCTGGGTGACAAAGATGCTGTTGTTGTTTCACTGTGCTTTGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGTTCCTGGGTGACAAAGATGCTGTTGTTGTTTCACTGTGCTTTGT  940

seq1  TTTTTTAGACAGTGTCTCATGTAGCCCAGGCTGTCCTTGAATACACTGTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAGACAGTGTCTCATGTAGCCCAGGCTGTCCTTGAATACACTGTG  990

seq1  TAGCTGAGGCTGGCCCTGAACTCCTGATCTTATCTTCACTTCTTTATCTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGAGGCTGGCCCTGAACTCCTGATCTTATCTTCACTTCTTTATCTA  1040

seq1  ATATTTCGATTACTGGCACATGGCACTGTCGCTTGCTGGGTGCTGTGGTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCGATTACTGGCACATGGCACTGTCGCTTGCTGGGTGCTGTGGTT  1090

seq1  CGGTGAACCTTAGCTTGAGATTCTACAATGTTTTTTCTTACCAGCTTTGA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTGAACCTTAGCTTGAGATTCTACAATGTTTTTTCTTACCAGCTTTGA  1140

seq1  CCCAAGGGTGAATTC  1162
      |||||||||||||||
seq2  CCCAAGGGTGAATTC  1155