BAC Information

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BAC

Clone NameB6Ng01-072O03
Chromosome4 (Build37)
Map Location 56,458,346 - 56,608,007
singlet/doubletdoublet
Overlap genenone
Upstream geneKlf4
Downstream geneActl7b, Actl7a, Ikbkap, BC026590, Ctnnal1, D730040F13Rik, 6430704M03Rik, Epb4.1l4b, Ptpn3, LOC100041460, 1700042G15Rik, LOC100041342, LOC619973, LOC667049, Palm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-072O03.bB6Ng01-072O03.g
ACCDH890170DH890171
length3941,042
definitionDH890170|Mus musculus domesticus DNA, BAC clone: B6Ng01-072O03, 5' end.DH890171|Mus musculus domesticus DNA, BAC clone: B6Ng01-072O03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,607,608 - 56,608,007)(56,458,346 - 56,459,388)
sequence
tgctttctcttaaaagatcattgactttcttccttcctttcttttttttt
caatattaaaattgcattcatttatcatgtgtgtgtacatgcatgtgcat
atgtgagagcatgtgtgtgtgtgtgcatgtatatgtgtgcacaaatgcag
gcatgcaggcactcaggcaggactgtgtaccaaggcatgcacgtggaggt
caatggacagacaacactgtacagttttctccctccactctgtggatccc
tgggatcaaactcagggtgacaaacttggtggcagacactgttagccaca
gaatgcagaggactgaacccaccacccacaacatgctggacaagtgctct
cccgctgagtcagaaggggagagggtgtgtgtgtgtgtgggggg
gaattcttcagaggactggaagtgaccagtacagagctgggtacatggtt
gggactcaatcgatggcttcttccagtgtgtagaaagagaggtggcacag
cagagtcacggtatttacacttgcttcaaactgtccatcacacctctgaa
ctgtgagtgacaccagccgagtggggaaagtgaacatgaaagaaccagcc
atgatctgtgaaggatgccaccacttatagctcatttgatgttcctctta
caaagaacctttcactttaccattacatctttccttagatgaaaaccaga
atgcaaaggacaacaggcatttactcagaaactgttgactgaaaccctcc
ttctcgatacggttagttctaggcacaatgacaatctagacaactgcaga
tatctcagctttaaaccactttcaggacatgaacagactgatacacaaac
agatggcctgtcacttgagacacaaggtttctgagacattctgctcttga
gaaaggccatttaagctgccgagtgaagcaggaaggcccgtaccaccata
tcaatgtgtctgttttcctaagtcatgccagcagagcatgtgagggtaat
gctacagtgtaatacatattctatagacaacattccaaaagagattgggg
atacaaaatcaccatgcgcatcagaaggagcacaaacaaatctgaatatg
taaggaaaaactgatgtactaaagagaaggaggagagagacaaggaagtg
aggaggatgaacggacagacagagatcagttatagtgggggattgagggc
agaaacaaagaggcatagcaaaaaataggggaaagaaaaataaactgttt
tctgtttaatttgtattatgggggatgggatttgcatgtaaattttgttt
gtttgtttgtttactgaatcctactgaacccatattgaagtgttatttag
tatgtaagctgcactgctgtgcttttagaataagataagaaaagaaattg
aaaaaatgtgttaaagaacaggggagggggaaggggaaatgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_56607608_56608007
seq2: B6Ng01-072O03.b_47_446 (reverse)

seq1  CCCCCCACACACACACACACCCTCTCCCCTTCTGACTCAGCGGGAGAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCACACACACACACACCCTCTCCCCTTCTGACTCAGCGGGAGAGCA  50

seq1  CTTGTCCAGCATGTTGTGGGTGGTGGGTTCAGTCCTCTGCATTCTGTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCCAGCATGTTGTGGGTGGTGGGTTCAGTCCTCTGCATTCTGTGGC  100

seq1  TAACAGTGTCTGCCACCAAGTTTGTCACCCTGAGTTTGATCCCAGGGATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGTGTCTGCCACCAAGTTTGTCACCCTGAGTTTGATCCCAGGGATC  150

seq1  CACAGAGTGGAGGGAGAAAACTGTACAGTGTTGTCTGTCCATTGACCTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGTGGAGGGAGAAAACTGTACAGTGTTGTCTGTCCATTGACCTCC  200

seq1  ACGTGCATGCCTTGGTACACAGTCCTGCCTGAGTGCCTGCATGCCTGCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGCATGCCTTGGTACACAGTCCTGCCTGAGTGCCTGCATGCCTGCAT  250

seq1  TTGTGCACACATATACATGCACACACACACACATGCTCTCACATATGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCACACATATACATGCACACACACACACATGCTCTCACATATGCAC  300

seq1  ATGCATGTACACACACATGATAAATGAATGCAATTTTAATATTGAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGTACACACACATGATAAATGAATGCAATTTTAATATTGAAAAAA  350

seq1  AAAGAAAGGAAGGAAGAAAGTCAATGATCTTTTAAGAGAAAGCAGAATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGGAAGGAAGAAAGTCAATGATCTTTTAAGAGAAAGCAGAATTC  400

seq1: chr4_56458346_56459388
seq2: B6Ng01-072O03.g_68_1109

seq1  GAATTCTTCAGAGGACTGGAAGTGACCAGTACAGAGCTGGGTACATGGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAGAGGACTGGAAGTGACCAGTACAGAGCTGGGTACATGGTT  50

seq1  GGGACTCAATCGATGGCTTCTTCCAGTGTGTAGAAAGAGAGGTGGCACAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTCAATCGATGGCTTCTTCCAGTGTGTAGAAAGAGAGGTGGCACAG  100

seq1  CAGAGTCACGGTATTTACACTTGCTTCAAACTGTCCATCACACCTCTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTCACGGTATTTACACTTGCTTCAAACTGTCCATCACACCTCTGAA  150

seq1  CTGTGAGTGACACCAGCCGAGTGGGGAAAGTGAACATGAAAGAACCAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGAGTGACACCAGCCGAGTGGGGAAAGTGAACATGAAAGAACCAGCC  200

seq1  ATGATCTGTGAAGGATGCCACCACTTATAGCTCATTTGATGTTCCTCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCTGTGAAGGATGCCACCACTTATAGCTCATTTGATGTTCCTCTTA  250

seq1  CAAAGAACCTTTCACTTTACCATTACATCTTTCCTTAGATGAAAACCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAACCTTTCACTTTACCATTACATCTTTCCTTAGATGAAAACCAGA  300

seq1  ATGCAAAGGACAACAGGCATTTACTCAGAAACTGTTGACTGAAACCCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAAGGACAACAGGCATTTACTCAGAAACTGTTGACTGAAACCCTCC  350

seq1  TTCTCGATACGGTTAGTTCTAGGCACAATGACAATCTAGACAACTGCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCGATACGGTTAGTTCTAGGCACAATGACAATCTAGACAACTGCAGA  400

seq1  TATCTCAGCTTTAAACCACTTTCAGGACATGAACAGACTGATACACAAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCAGCTTTAAACCACTTTCAGGACATGAACAGACTGATACACAAAC  450

seq1  AGATGGCCTGTCACTTGAGACACAAGGTTTCTGAGACATTCTGCTCTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCCTGTCACTTGAGACACAAGGTTTCTGAGACATTCTGCTCTTGA  500

seq1  GAAAGGCCATTTAAGCTGCCGAGTGAAGCAGGAAGGCCCGTACCACCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGCCATTTAAGCTGCCGAGTGAAGCAGGAAGGCCCGTACCACCATA  550

seq1  TCAATGTGTCTGTTTTCCTAAGTCATGCCAGCAGAGCATGTGAGGGTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATGTGTCTGTTTTCCTAAGTCATGCCAGCAGAGCATGTGAGGGTAAT  600

seq1  GCTACAGTGTAATACATATTCTATAGACAACATTCCAAAAGAGATTGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGTGTAATACATATTCTATAGACAACATTCCAAAAGAGATTGGGG  650

seq1  ATACAAAATCACCATGCGCATCAGAAGGAGCACAAACAAATCTGAATATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAAATCACCATGCGCATCAGAAGGAGCACAAACAAATCTGAATATG  700

seq1  TAAGGAAAAACTGATGTACTAAAGAGAAGGAGGAGAGAGACAAGGAAGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAAAAACTGATGTACTAAAGAGAAGGAGGAGAGAGACAAGGAAGTG  750

seq1  AGGAGGATGAACGGACAGACAGAGATCAGTTATAGTGGGGGATTGAGGGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGATGAACGGACAGACAGAGATCAGTTATAGTGGGGGATTGAGGGC  800

seq1  AGAAACAAAGAGGCATAGCAAAAAATAGGGGAAAGAAAAAATAAACTGTT  850
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGAAACAAAGAGGCATAGCAAAAAATAGGGGAAAG-AAAAATAAACTGTT  849

seq1  TTCTGTTTAATTTGTATTAT-GGGGATGGGATTTGCAATGTAAATTTTGT  899
      |||||||||||||||||||| ||||||||||||||| |||||||||||||
seq2  TTCTGTTTAATTTGTATTATGGGGGATGGGATTTGC-ATGTAAATTTTGT  898

seq1  TTGTTTGTTTGTTTACTGAATCCTACTGAACCCATTATTGAAGTGTTATT  949
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TTGTTTGTTTGTTTACTGAATCCTACTGAACCCA-TATTGAAGTGTTATT  947

seq1  TAGTATGTAAGCTGCACTGCTGTGCTTTAAGATAAAGATAAGAAAAGAAA  999
      |||||||||||||||||||||||||||| |||  ||||||||||||||||
seq2  TAGTATGTAAGCTGCACTGCTGTGCTTTTAGAATAAGATAAGAAAAGAAA  997

seq1  ATGAAAAAAATGTG-TAGAGAACAGGGGA-GGGGAAGGGGAAATGG  1043
       || |||||||||| || ||||||||||| ||||||||||||||||
seq2  TTG-AAAAAATGTGTTAAAGAACAGGGGAGGGGGAAGGGGAAATGG  1042