BAC Information

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BAC

Clone NameB6Ng01-074O19
Chromosome4 (Build37)
Map Location 138,664,095 - 138,810,825
singlet/doubletdoublet
Overlap gene2310028O11Rik, Hspe1-ps4, 9530077C14Rik, Capzb
Upstream geneEif4g3, Hp1bp3, Kif17, Ddost, Pink1, Cda, LOC625638, LOC625646, 0610009K11Rik, Camk2n1, LOC100040618, 4931403E03Rik, Ubxd3, Pla2g2c, Pla2g2f, Pla2g2d, Pla2g5, Pla2g2a, Pla2g2e, Otud3, Rnf186, Tmco4, Htr6, LOC665683, Nbl1
Downstream genePqlc2, LOC100042808, Akr7a5, LOC625977, LOC626000, Mrto4, C230096C10Rik, Zubr1, C79267, Aldh4a1, Tas1r2, Pax7, Gm1667, Klhdc7a, Igsf21, LOC100040728
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-074O19.bB6Ng01-074O19.g
ACCDH891638DH891639
length1,149387
definitionDH891638|Mus musculus domesticus DNA, BAC clone: B6Ng01-074O19, 5' end.DH891639|Mus musculus domesticus DNA, BAC clone: B6Ng01-074O19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,809,697 - 138,810,825)(138,664,095 - 138,664,487)
sequence
gaattccacatcagtatgaccaggcctggtggcacagtcctaaatatttg
ggaggctgaagcaggaggatcctaagttcaaagactggctgggttgtaca
gtgagtttcaagcctacttgagtaacttaagaccttgtgttatgagaaaa
cagacatccgggaagatagttcagtggtagagtgcttgcctactgcacat
gaggtcctcaattcaattctcagtgtctcaagttaccagcaaaacgaaca
aataacaccactaccaaaccaaagccccaagcccagcctgaagagtcaca
gtaatgacagaaggacagaaccaggcaaactatgccagagactagccacc
cctaaagagctaatcccagacttctgcaagcccacgcctccaaacaacca
cagaagaacatacactcaactgagcccttaccatggcagcacacagtgga
aaactatggagatcgtgcaggacataggatgtgcccgagcacacaagtac
ctaggatgggtcacagacagctagttggctctgcctgctcaggtccctaa
aagacaagttcttaagttgggccatattttcaagttctgtttgcatcaat
ccctcttctgataaaagacaacctagtctagaatgacactgtgctgtcac
tggaaacaagtacagactatacagtgtggctatacagtgtgggagcagct
gccctaggcacatggggtgtgcgcatgcacatgcgtgtacattcgtgtac
catgtgtcagtcctgcccctcatcctgtcctctatccaccttctcaacac
tggactactagccatctcctctacatgctagtttgtataaaaaccctccc
cattgagagttggtgcagaaactataggctgctgagttaaactgaatttt
gagtcacaaggaagacagttccagtttgaccacccccttctattgttaca
caggataagctgtttttagttgttcaatctaacactctgccatatttccc
cgagtctccttcaggaccttgttcctggactccccacttctcttccaggc
atcgtgggagtttccaccaatgacaggcgaggaccctgaattgcttcctg
aacctggcttgttcctaattaccagccagaaaactctcgggagactgtg
ccaatgaagggcctagcagatacttctgaagactcgacgagctctgtaca
aagttaaacaggaccccacaccaagagggttttgttgccagagaggaatg
ttcatggtgcattccctgccaccaacaaacctggggagaaaagcagaaag
caaaacaaaacaaaacaaagctccaggctggttctgaagaggtcgcctca
agcaggctgtccaggtgccctgcagtgactgtcatggcaggaggggacag
ttctgcgtgctttactgcagctcgccttccagcgaggtgtgacgtggagc
tggaagaaggtgctatgaatgattctgaccccaggaataaatgcgggcct
aggacattacatgtgtatatgtgggagtgggggtggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_138809697_138810825
seq2: B6Ng01-074O19.b_46_1194 (reverse)

seq1  CACAGTCTCCCGAG---TCTCT-GCTGGT-ATTAGGA--CAGCCA-GTTC  42
      ||||||||||||||   | ||| |||||| |||||||   ||||| ||||
seq2  CACAGTCTCCCGAGAGTTTTCTGGCTGGTAATTAGGAACAAGCCAGGTTC  50

seq1  AGG-AGCAA-TCAGGGTCCTCTGCTGTCCATTGGTGG-AACT-CCACGAT  88
      ||| ||||| |||||||||||  |||| ||||||||| |||| |||||||
seq2  AGGAAGCAATTCAGGGTCCTCGCCTGT-CATTGGTGGAAACTCCCACGAT  99

seq1  GCCTGG-AGAGAAGT-GGGAGT-CAGGGAC-AGGT-CTGAAGGAGACTCG  133
      |||||| |||||||| |||||| |||| || |||| ||||||||||||||
seq2  GCCTGGAAGAGAAGTGGGGAGTCCAGGAACAAGGTCCTGAAGGAGACTCG  149

seq1  GGG-AATATGGCAGAGTGTTAGATTGAACAACTAAAAACAGC-TATCCTG  181
      ||| |||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGGAAATATGGCAGAGTGTTAGATTGAACAACTAAAAACAGCTTATCCTG  199

seq1  TGTAACATTAGA--GGGGTGGTCAAACTGGAACCGTCTTCCTTGTGACTC  229
      ||||||| ||||  ||||||||||||||||||| ||||||||||||||||
seq2  TGTAACAATAGAAGGGGGTGGTCAAACTGGAACTGTCTTCCTTGTGACTC  249

seq1  AAAATTCAGTTTAACTCAGCAGCCTATAGTTTCTGCACCAACTCTCAATG  279
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTCAGTTTAACTCAGCAGCCTATAGTTTCTGCACCAACTCTCAATG  299

seq1  GGGAGGGTTTTTATACAAACTAGCATGTAGAGGAGATGGCTAGTAGTCCA  329
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGTTTTTATACAAACTAGCATGTAGAGGAGATGGCTAGTAGTCCA  349

seq1  GTGTTGAGAAGGTGGATAGAGGACAGGATGAGGGGCAGGACTGACACATG  379
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGAGAAGGTGGATAGAGGACAGGATGAGGGGCAGGACTGACACATG  399

seq1  GTACACGAATGTACACGCATGTGCATGCGCACACCCCATGTGCCTAGGGC  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACGAATGTACACGCATGTGCATGCGCACACCCCATGTGCCTAGGGC  449

seq1  AGCTGCTCCCACACTGTATAGCCACACTGTATAGTCTGTACTTGTTTCCA  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTCCCACACTGTATAGCCACACTGTATAGTCTGTACTTGTTTCCA  499

seq1  GTGACAGCACAGTGTCATTCTAGACTAGGTTGTCTTTTATCAGAAGAGGG  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACAGCACAGTGTCATTCTAGACTAGGTTGTCTTTTATCAGAAGAGGG  549

seq1  ATTGATGCAAACAGAACTTGAAAATATGGCCCAACTTAAGAACTTGTCTT  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATGCAAACAGAACTTGAAAATATGGCCCAACTTAAGAACTTGTCTT  599

seq1  TTAGGGACCTGAGCAGGCAGAGCCAACTAGCTGTCTGTGACCCATCCTAG  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGACCTGAGCAGGCAGAGCCAACTAGCTGTCTGTGACCCATCCTAG  649

seq1  GTACTTGTGTGCTCGGGCACATCCTATGTCCTGCACGATCTCCATAGTTT  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTGTGTGCTCGGGCACATCCTATGTCCTGCACGATCTCCATAGTTT  699

seq1  TCCACTGTGTGCTGCCATGGTAAGGGCTCAGTTGAGTGTATGTTCTTCTG  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGTGTGCTGCCATGGTAAGGGCTCAGTTGAGTGTATGTTCTTCTG  749

seq1  TGGTTGTTTGGAGGCGTGGGCTTGCAGAAGTCTGGGATTAGCTCTTTAGG  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGTTTGGAGGCGTGGGCTTGCAGAAGTCTGGGATTAGCTCTTTAGG  799

seq1  GGTGGCTAGTCTCTGGCATAGTTTGCCTGGTTCTGTCCTTCTGTCATTAC  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCTAGTCTCTGGCATAGTTTGCCTGGTTCTGTCCTTCTGTCATTAC  849

seq1  TGTGACTCTTCAGGCTGGGCTTGGGGCTTTGGTTTGGTAGTGGTGTTATT  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGACTCTTCAGGCTGGGCTTGGGGCTTTGGTTTGGTAGTGGTGTTATT  899

seq1  TGTTCGTTTTGCTGGTAACTTGAGACACTGAGAATTGAATTGAGGACCTC  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCGTTTTGCTGGTAACTTGAGACACTGAGAATTGAATTGAGGACCTC  949

seq1  ATGTGCAGTAGGCAAGCACTCTACCACTGAACTATCTTCCCGGATGTCTG  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCAGTAGGCAAGCACTCTACCACTGAACTATCTTCCCGGATGTCTG  999

seq1  TTTTCTCATAACACAAGGTCTTAAGTTACTCAAGTAGGCTTGAAACTCAC  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCATAACACAAGGTCTTAAGTTACTCAAGTAGGCTTGAAACTCAC  1049

seq1  TGTACAACCCAGCCAGTCTTTGAACTTAGGATCCTCCTGCTTCAGCCTCC  1079
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAACCCAGCCAGTCTTTGAACTTAGGATCCTCCTGCTTCAGCCTCC  1099

seq1  CAAATATTTAGGACTGTGCCACCAGGCCTGGTCATACTGATGTGGAATTC  1129
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATTTAGGACTGTGCCACCAGGCCTGGTCATACTGATGTGGAATTC  1149

seq1: chr4_138664095_138664487
seq2: B6Ng01-074O19.g_66_458

seq1  GAATTCCCAATGAAGGGCCTAGCAGATACTTCTGAAGACTCGACGAGCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAATGAAGGGCCTAGCAGATACTTCTGAAGACTCGACGAGCTC  50

seq1  TGTACAAAGTTAAACAGGACCCCACACCAAGAGGGTTTTGTTGCCAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAAAGTTAAACAGGACCCCACACCAAGAGGGTTTTGTTGCCAGAGA  100

seq1  GGAATGTTCATGGTGCATTCCCTGCCACCAACAAACCTGGGGAGAAAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGTTCATGGTGCATTCCCTGCCACCAACAAACCTGGGGAGAAAAGC  150

seq1  AGAAAGCAAAACAAAACAAAACAAAGCTCCAGGCTGGTTCTGAAGAGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGCAAAACAAAACAAAACAAAGCTCCAGGCTGGTTCTGAAGAGGTC  200

seq1  GCCTCAAGCAGGCTGTCCAGGTGCCCTGCAGTGACTGTCATGGCAGGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAAGCAGGCTGTCCAGGTGCCCTGCAGTGACTGTCATGGCAGGAGG  250

seq1  GGACAGTTCTGCGTGCTTTACTGCAGCTCGCCTTCCAGCGAGGTGTGACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGTTCTGCGTGCTTTACTGCAGCTCGCCTTCCAGCGAGGTGTGACG  300

seq1  TGGAGCTGGAAGAAGGTGCTATGAATGATTCTGACCCCAGGAATAAATGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCTGGAAGAAGGTGCTATGAATGATTCTGACCCCAGGAATAAATGC  350

seq1  GGGCCTAGGACATTACATGTGTATATGTGGGAGTGGGGGTGGG  393
      |||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTAGGACATTACATGTGTATATGTGGGAGTGGGGGTGGG  393