BAC Information

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BAC

Clone NameB6Ng01-077E05
Chromosome4 (Build37)
Map Location 41,719,425 - 41,861,771
singlet/doubletdoublet
Overlap geneCcl27, LOC100039789, LOC623085, LOC100042466, LOC100042472, LOC100042493, Ccl19-ps1, LOC621580, LOC545611
Upstream geneLOC100042305, B4galt1, LOC100039668, Spink4, Bag1, Chmp5, Nfx1, Aqp7, Aqp3, Nol6, Ube2r2, Ubap2, Wdr40a, Ubap1, Kif24, Nudt2, AI464131, 1110017D15Rik, 1700066J24Rik, 2310028H24Rik, Dnaic1, 2310040A07Rik, LOC100042420, Cntfr, 2810432D09Rik, Dctn3, OTTMUSG00000006683, Oprs1, Galt, Il11ra1
Downstream geneLOC100042524, LOC100042519, LOC100039817, LOC100042536, LOC100039824, LOC100042539, LOC100042544, LOC100039848, LOC100039863, LOC100042555, 1700045I11Rik, LOC100039894, LOC100039909, EG545605, LOC674214, LOC100038965, LOC100039053, LOC100039193, LOC100039374, LOC100039930, LOC100038993, LOC100039939, Ccl19-ps3, Ccl21c, LOC100039323, LOC665845, LOC100039973, LOC100039986, 4933409K07Rik, LOC100039344, LOC100039995, EG623054, Ccl19-ps2, LOC100039331, LOC100039131, LOC100040035, LOC100040048, Il11ra2, LOC665962, LOC545614, 1700008B15Rik, Ccl19, Ccl21b, LOC100039205, LOC433698
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-077E05.bB6Ng01-077E05.g
ACCDH893287DH893288
length1,1731,005
definitionDH893287|Mus musculus domesticus DNA, BAC clone: B6Ng01-077E05, 5' end.DH893288|Mus musculus domesticus DNA, BAC clone: B6Ng01-077E05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(41,860,586 - 41,861,771)(41,719,425 - 41,720,436)
sequence
gaattccccctcaggacttaacaagcacccaggatattggcttgaattaa
agaaaagtatttcagataagtcttaatcaatcaaaaggagaagatgcact
gaaagagacccagggtagccattggagaagagagtacacaagtgccttag
ctacagttgtacgcatggttttggtgcccttgaagtggcacttgaggaca
acaatctacatcgaagacagaattgaaagtcgttggtaggtacacatatt
tctttactgaagcaggcattttagtagcagtgagatgcatttgaggctat
atcaacaactaagatctacaactaagactttaagaagtgtttgcatactc
aatttctgacagaaagtgttaggtctctgaggcagcttaaagggacagga
ggcagaaaagagaaggagccctagctgcagcccggactgcgtttatccgt
gcacagcgagcttcctcagggaagctggagactctcccagaggaaaacag
atggctgtgaccctttgtatggtttttgttgtttcggtcttagacattag
ccattagctgttctaagagtcacatttgtaatatttttagaagtgaagta
tagtgtaggttcgttttgttttgttttgttttgtttttgcacaggccaac
tgcagtcaattgtcaaaattcttgactctgtcagcaagtgacataaacca
ctccagagggtcaggttatctctatgtgtttttctgtctgtctctgtctc
tctgtctgtctctgggtctgtctgtctctggtgcccttaatctttccctg
tttttctatcctgtctcagaatctacataaactctatctgttaatccagc
acactgaattttcaacaggaattttgagaagacatggacgtgtataactt
cccctctcctcttctcttcttcttccttctctagcttggactgaagctgg
atcctggtacaggcaagcaccactttaagtttttgcacggaactttcttc
agtcgggcataccagcatctgttcatcctctgtttgacctccatcctgca
aagactctagaaaaactcagtaatctttcttggaccctgcagtcaggcat
aggttatacttcacatgttacctctgttctaaagaaaaaaattcatttct
aatttgtgtttggtttttgcgac
gaattccatcccgggaagccatatggatgaaaaaaccctcacaaagggtc
atatcctctgatctctgcatgcacatgcattgtggtgggcacacacacac
attacaaacacacacacacttaaaaaattaaatacaaaaacaaaaaattg
ggatcagattgggggagccagtttggggttttaactatagaaaggacctt
ggaccctcaacccttgtcactctcctggggtacactgctggagacagctt
ctagaaactggtccttcctctcactgacagcagactcctcaactttggct
aaaatgttttatatccactcccaggaaaagaggattctccagacatctgg
caaagttatggctagagttaggtggtaacagctgaagttgtgggaacact
gataagtgggggaaagatgtggcctactctcagtgtgggtgcttttgggg
agggcgtggcagagagccagtcactgatagtaattacaagcctgaccctt
aggagcaatggagtcctacacatgcaaaggcttcctaccagggagggatg
ccctgtgggttaacaaacagcaggtgtggagtgggattcccagcaccaaa
ggcggctgcggcgctaaagtcagggaggcagtgggcgtgactttaaatct
ttaatgcaccggctgtctgtgcagcagcggtgggggtgcgacagaggaga
ccacgacccgagcgctggggagcaggcctcaggccgctcgacaaacagct
cattaggccccgcagaggctccagcttctgctcccgggggtgcgccgagc
tgtagggcgacccgacaatgacatgaggcggggcaggggcgcctggactc
cccacatccgtccaccgacactgaacttcgttcatgccctcagagatcgc
agccctctcacttccgctctctgcgccacattcgcagccaaggaaaaagt
agaagcagcccagtagatctgcaagacaagcagagccggaccgggagggg
cgggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_41860586_41861771
seq2: B6Ng01-077E05.b_46_1218 (reverse)

seq1  GTCGCAAAAACCAAAACAAACAAATAAGAAATGAATTGTCTTCTCTAAGA  50
      ||||||||||||||   | |||||| ||||||||||| | |||| |   |
seq2  GTCGCAAAAACCAA---ACACAAATTAGAAATGAATTTTTTTCTTT---A  44

seq1  GACCAGA-GTGACATGTGAAGTATAAACTATGCCCTTGACTGCAGTGGTC  99
      || |||| || ||||||||||||||| |||||||  ||||||||| ||||
seq2  GAACAGAGGTAACATGTGAAGTATAACCTATGCC--TGACTGCAG-GGTC  91

seq1  CAAGAACAGATTACTGATGTTTTTCTAAGAGTCTTTGCA-GATGGAAGGT  148
      |||||| |||||||||| |||||||| |||||||||||| ||||| ||||
seq2  CAAGAA-AGATTACTGA-GTTTTTCT-AGAGTCTTTGCAGGATGG-AGGT  137

seq1  CAAACAGA-GATGGACAGATGCTGGTATGCCCGACTGAAGAAAGTTCCGT  197
      |||||||| |||| ||||||||||||||||||||||||||||||||||||
seq2  CAAACAGAGGATGAACAGATGCTGGTATGCCCGACTGAAGAAAGTTCCGT  187

seq1  GCAAAAACCTTAAGTGGTGCTTGCCTGTACCAGGATCCAGCTTCAGTCCA  247
      |||||||| | |||||||||||||||||||||||||||||||||||||| 
seq2  GCAAAAACTTAAAGTGGTGCTTGCCTGTACCAGGATCCAGCTTCAGTCC-  236

seq1  AAGCTAGAGAAGGAAGAAGAAGAGGAAGAGGAGGAGGGGAAGTTATTACA  297
      ||||||||||||||||||||||| |||||||| |||||||||||| ||||
seq2  AAGCTAGAGAAGGAAGAAGAAGA-GAAGAGGA-GAGGGGAAGTTA-TACA  283

seq1  CGTCCATGTCTTCTCAAAATTCCTGTTGAAAATTCAGTGTGCTGGATTAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCATGTCTTCTCAAAATTCCTGTTGAAAATTCAGTGTGCTGGATTAA  333

seq1  CAGATAGAGTTTATGTAGATTCTGAGACAGGATAGAAAAACAGGGAAAGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATAGAGTTTATGTAGATTCTGAGACAGGATAGAAAAACAGGGAAAGA  383

seq1  TTAAGGGCACCAGAGACAGACAGACCCAGAGACAGACAGAGAGACAGAGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGGCACCAGAGACAGACAGACCCAGAGACAGACAGAGAGACAGAGA  433

seq1  CAGACAG-AAAACACATAGAGATAACCTGACCCTCTGGAGTGGTTTATGT  496
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACAGAAAAACACATAGAGATAACCTGACCCTCTGGAGTGGTTTATGT  483

seq1  CACTTGCTGACAGAGTCAAGAATTTTGACAGTTGACTGCAGTTGGCCTGT  546
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CACTTGCTGACAGAGTCAAGAATTTTGACAATTGACTGCAGTTGGCCTGT  533

seq1  GCAAAAACAAAACAAAACAAAACAAAACGAACCTACACTATACTTCACTT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAACAAAACAAAACAAAACAAAACGAACCTACACTATACTTCACTT  583

seq1  CTAAAAATATTACAAATGTGACTCTTAGAACAGCTAATGGCTAATGTCTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAATATTACAAATGTGACTCTTAGAACAGCTAATGGCTAATGTCTA  633

seq1  AGACCGAAACAACAAAAACCATACAAAGGGTCACAGCCATCTGTTTTCCT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCGAAACAACAAAAACCATACAAAGGGTCACAGCCATCTGTTTTCCT  683

seq1  CTGGGAGAGTCTCCAGCTTCCCTGAGGAAGCTCGCTGTGCACGGATAAAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGAGTCTCCAGCTTCCCTGAGGAAGCTCGCTGTGCACGGATAAAC  733

seq1  GCAGTCCGGGCTGCAGCTAGGGCTCCTTCTCTTTTCTGCCTCCTGTCCCT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTCCGGGCTGCAGCTAGGGCTCCTTCTCTTTTCTGCCTCCTGTCCCT  783

seq1  TTAAGCTGCCTCAGAGACCTAACACTTTCTGTCAGAAATTGAGTATGCAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCTGCCTCAGAGACCTAACACTTTCTGTCAGAAATTGAGTATGCAA  833

seq1  ACACTTCTTAAAGTCTTAGTTGTAGATCTTAGTTGTTGATATAGCCTCAA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTCTTAAAGTCTTAGTTGTAGATCTTAGTTGTTGATATAGCCTCAA  883

seq1  ATGCATCTCACTGCTACTAAAATGCCTGCTTCAGTAAAGAAATATGTGTA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATCTCACTGCTACTAAAATGCCTGCTTCAGTAAAGAAATATGTGTA  933

seq1  CCTACCAACGACTTTCAATTCTGTCTTCGATGTAGATTGTTGTCCTCAAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCAACGACTTTCAATTCTGTCTTCGATGTAGATTGTTGTCCTCAAG  983

seq1  TGCCACTTCAAGGGCACCAAAACCATGCGTACAACTGTAGCTAAGGCACT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACTTCAAGGGCACCAAAACCATGCGTACAACTGTAGCTAAGGCACT  1033

seq1  TGTGTACTCTCTTCTCCAATGGCTACCCTGGGTCTCTTTCAGTGCATCTT  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTACTCTCTTCTCCAATGGCTACCCTGGGTCTCTTTCAGTGCATCTT  1083

seq1  CTCCTTTTGATTGATTAAGACTTATCTGAAATACTTTTCTTTAATTCAAG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTTTTGATTGATTAAGACTTATCTGAAATACTTTTCTTTAATTCAAG  1133

seq1  CCAATATCCTGGGTGCTTGTTAAGTCCTGAGGGGGAATTC  1186
      ||||||||||||||||||||||||||||||||||||||||
seq2  CCAATATCCTGGGTGCTTGTTAAGTCCTGAGGGGGAATTC  1173

seq1: chr4_41719425_41720436
seq2: B6Ng01-077E05.g_69_1073

seq1  GAATTCCATCCCGGGAAGCCATATGGATGAAAAAACCCTCACAAAGGGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCCCGGGAAGCCATATGGATGAAAAAACCCTCACAAAGGGTC  50

seq1  ATATCCTCTGATCTCTGCATGCACATGCATTGTGGTGGGCACACACACAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCTCTGATCTCTGCATGCACATGCATTGTGGTGGGCACACACACAC  100

seq1  ATTACAAACACACACACACTTAAAAAATTAAATACAAAAACAAAAAATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAAACACACACACACTTAAAAAATTAAATACAAAAACAAAAAATTG  150

seq1  GGATCAGATTGGGGGAGCCAGTTTGGGGTTTTAACTATAGAAAGGACCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCAGATTGGGGGAGCCAGTTTGGGGTTTTAACTATAGAAAGGACCTT  200

seq1  GGACCCTCAACCCTTGTCACTCTCCTGGGGTACACTGCTGGAGACAGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCTCAACCCTTGTCACTCTCCTGGGGTACACTGCTGGAGACAGCTT  250

seq1  CTAGAAACTGGTCCTTCCTCTCACTGACAGCAGACTCCTCAACTTTGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAACTGGTCCTTCCTCTCACTGACAGCAGACTCCTCAACTTTGGCT  300

seq1  AAAATGTTTTATATCCACTCCCAGGAAAAGAGGATTCTCCAGACATCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTTTTATATCCACTCCCAGGAAAAGAGGATTCTCCAGACATCTGG  350

seq1  CAAAGTTATGGCTAGAGTTAGGTGGTAACAGCTGAAGTTGTGGGAACACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTTATGGCTAGAGTTAGGTGGTAACAGCTGAAGTTGTGGGAACACT  400

seq1  GATAAGTGGGGGAAAGATGTGGCCTACTCTCAGTGTGGGTGCTTTTGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGTGGGGGAAAGATGTGGCCTACTCTCAGTGTGGGTGCTTTTGGGG  450

seq1  AGGGCGTGGCAGAGAGCCAGTCACTGATAGTAATTACAAGCCTGACCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCGTGGCAGAGAGCCAGTCACTGATAGTAATTACAAGCCTGACCCTT  500

seq1  AGGAGCAATGGAGTCCTACACATGCAAAGGCTTCCTACCAGGGAGGGATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCAATGGAGTCCTACACATGCAAAGGCTTCCTACCAGGGAGGGATG  550

seq1  CCCTGTGGGTTAACAAACAGCAGGTGTGGAGTGGGATTCCCAGCACCAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGGGTTAACAAACAGCAGGTGTGGAGTGGGATTCCCAGCACCAAA  600

seq1  GGCGGCTGCGGCGCTAAAGTCAGGGAGGCAGTGGGCGTGACTTTAAATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGGCTGCGGCGCTAAAGTCAGGGAGGCAGTGGGCGTGACTTTAAATCT  650

seq1  TTAATGCACCGGCTGTCTGTGCAGCAGCGGTGGGGGTGCGACAGAGGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATGCACCGGCTGTCTGTGCAGCAGCGGTGGGGGTGCGACAGAGGAGA  700

seq1  CCACGACCCGAGCGCTGGGGAGCAGGCCTCAGGCCGCTCGACAAACAGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGACCCGAGCGCTGGGGAGCAGGCCTCAGGCCGCTCGACAAACAGCT  750

seq1  CATTAGGCCCCGCAGAGGCTCCAGCTTCTGCTCCCGGGGGTGCGCCGAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGGCCCCGCAGAGGCTCCAGCTTCTGCTCCCGGGGGTGCGCCGAGC  800

seq1  TGTAGGGCGACCCGACAATGACATGAGGCGGGGCAGGGGCGCCTGGACTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TGTAGGGCGACCCGACAATGACATGAGGCGGGGCAGGGGCGCCTGGACT-  849

seq1  CCCCACATCCGTCCACCGACACTGAACCTCGTTCATGCCCCCACGAGATC  900
      ||||||||||||||||||||||||||| |||||||||||| || ||||||
seq2  CCCCACATCCGTCCACCGACACTGAACTTCGTTCATGCCCTCA-GAGATC  898

seq1  GCAGCCCCCTCACCTCCGCTCCCTGCGCCACATTCGCAGCCAAGGAAAAA  950
      ||||||| ||||| ||||||| ||||||||||||||||||||||| ||||
seq2  GCAGCCCTCTCACTTCCGCTCTCTGCGCCACATTCGCAGCCAAGG-AAAA  947

seq1  AGTAGAAGCAGCCCCAGTAGATCCTGCAAAGACAAGGCAGAGCCGGACCG  1000
      ||||||||||| |||||||||| |||| ||||||| ||||||||||||||
seq2  AGTAGAAGCAG-CCCAGTAGAT-CTGC-AAGACAA-GCAGAGCCGGACCG  993

seq1  GGAGGGGCGGGG  1012
      ||||||||||||
seq2  GGAGGGGCGGGG  1005