BAC Information

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BAC

Clone NameB6Ng01-080C19
Chromosome4 (Build37)
Map Location 44,643,797 - 44,791,386
singlet/doubletdoublet
Overlap genePax5, 5730488B01Rik, LOC545618, Zcchc7
Upstream geneNpr2, Spag8, Hint2, Serf2-ps, 4930412F15Rik, Olfr70, Olfr71, LOC100039781, 5430416O09Rik, A630077J23Rik, GA_x5J8B7W5BNN-892919-892147, Olfr159, Olfr29-ps1, Olfr156, LOC100040268, Olfr155, Reck, Glipr2, Ccin, Clta, Gne, LOC100040313, OTTMUSG00000007209, Rnf38, Melk
Downstream geneD4Wsu132e, Grhpr, Zbtb5, 1700055D18Rik, Polr1e, Fbxo10, 1110019J04Rik, Frmpd1, Rg9mtd3, Exosc3, LOC666325, Wdr32, Mcart1, Shb, LOC100040140, LOC100040557, Gm829, LOC100040567, LOC100040580
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080C19.bB6Ng01-080C19.g
ACCDH895386DH895387
length1,2091,200
definitionDH895386|Mus musculus domesticus DNA, BAC clone: B6Ng01-080C19, 5' end.DH895387|Mus musculus domesticus DNA, BAC clone: B6Ng01-080C19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,790,172 - 44,791,386)(44,643,797 - 44,644,985)
sequence
gaattcctttgagccttctgaggcctgttttcaactgctccagaaggggt
gggctagtcacacacacttgttagccttctttacagtaacaggtcaaatt
agaaatggtcacatacactgtaatataaagcagcacttactttacggctg
cccagaaaagaatgctagcgtagttatatatggctcataaagtatcttga
tgactgaaatatgattacagttatgagaatttgtccaaataacattatta
aaaatagaactttaaaaaccaaattcagaataaactcaaattaacaaaaa
aaaacactaaacaatattcaagaacaaacattaaactataaaaaaattaa
tttcactttttttttctagattaatcaagtttttagcagccaactaaatg
aaaatatgctttgtgaattttcacaagctttctcaacatgaatcttcaaa
gacattttagagcaaagatacaaatttacctgaaagcagctttctatttc
atccttttctgaaatacaatttacctcccaccccaacaaagaagccaatg
caacaccagcaatgggataatcaaggatacaatctgctactcttcacaat
gcttcctcccagtattaatattgctaattatgcatgtgtatcctgaaaaa
tgccaggactgtatttctatttcaaagtgtaatcactaaaaactttaaaa
gccaactgctagcatgtatcctgtatctttttctcatatctgcacctgtt
ttttaaaaaaggctccaatttatatcaatatttaaaatttaaaagttcaa
aaatttctgaatactaaaaagtgatatccttacaacctgaagaaagaaag
ttgtattatggcatacctgaattagaagcagtttctaaagcaaaatataa
aaattaatttttgtgattccccttctctactcttatatagacctctataa
ttttagattttcatattaataagctttaataaatacaatcacttattggg
cagtaatactaagtttcacggtacttcttgtaatgttttaaaacatatat
tgctttagaaagaaggcaagagaaaacattattagccacttttcactatc
aagccttgtcagcatgtttcaacccttttagtatttaaaatgggattcag
cactttcgtctctaaactctctattgttgtcagctggagtactggagcga
acaattcct
gaattcagagcactgtgcaaggggtgagggtaaatactatctcaacacat
tttttcataataaaagtccctgcatgataaaagacagagaaagcagaggg
acaaacaagtcccagagtctattcgacactgtcaactttgttaactctgt
cccgtccatcactcacttcccactgtccagtaaaggctgaagggagctca
catcatgaaaaaaaaatacagagaggcatagagggaaaaaggaaagccca
aagcagagcctaaaatgggaccaaggagccagtgagatgactcaacaggt
aaaggcacccacttattaccaagcctgacaacctaagttggatagccagg
attcacatggtagagagaacagactcctgtatcttgtcctctgacctcca
catgtgcacacagacaagataaatatggtgtaattttaaagtgagaccaa
taataaccatagccagcgatgaacacacacagcatggtatacatagtctc
tatttcatacagattctcagccaaacctcacacacctaaagaaagctagc
tctcgttatgtcccttttgtagacagacagagacttagctcacaatctgt
cttaggctacttaacacatccaagatcctgcagttggtttttggagctgg
gatggagcccacactctcaatggtcccactccccacacccccaagaccaa
gatcaaatgagaggcttatggcgttgatgaaggagaagccacacttggtc
ctcactgccacctgggagaagagaaaccgggtgaggcttctcacaggcgg
tgagaggtggactgggcattacttagcgctctcttactttctctcagccc
agtcactatttctcatgggcctcctaaggctttgatggatccatctccat
ggtgatttccataagtggccttccacagatagagtcaggaccacttcaaa
gcgcagttctgagaatgacactaagggcaccatccagtggcccatgcacc
cagctgaaagatttaggagtaagtgaagacagagagatgcacactgccca
gaaattctccccaagttatccacctgcatgatcaaagcaagctgccatgg
tcttcacagtatatagatttgtgtgcaaagaaccggctagaaaagtggct
ggtccttgtaagccaattactgaagccaccacagacaacgaccgagagag

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_44790172_44791386
seq2: B6Ng01-080C19.b_44_1252 (reverse)

seq1  AGGAATTGTCTGCTTCAAGTGACTCCAGCTGACAGACCAATAGAGAGTTT  50
      |||||||||  || || ||| ||||||||||||  | |||||||||||||
seq2  AGGAATTGTTCGC-TCCAGT-ACTCCAGCTGAC--AACAATAGAGAGTTT  46

seq1  TAAGAGACGAAAGTGCTGAAACTCCATTTTAAAATACTAAAAGGGTTG-A  99
        |||||||||||||||||| | ||||||| ||||||||||||||||| |
seq2  --AGAGACGAAAGTGCTGAATC-CCATTTT-AAATACTAAAAGGGTTGAA  92

seq1  ACATGCTTGACAAGGCTTGATAGTGAAAAGT-GCT-ATAATG-TTTCTCT  146
      |||||| |||||||||||||||||||||||| ||| |||||| |||||||
seq2  ACATGC-TGACAAGGCTTGATAGTGAAAAGTGGCTAATAATGTTTTCTCT  141

seq1  GGCCTCTATTCTAAAGCAATATATGTTTTAAAACATTAACAAGAAGTACC  196
       ||||   ||||||||||||||||||||||||||||| ||||||||||||
seq2  TGCCTTCTTTCTAAAGCAATATATGTTTTAAAACATT-ACAAGAAGTACC  190

seq1  GTGAAACTTAGTATTACTGCCCAATAAGTGATTGTATTTATTAAAGCTTA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAACTTAGTATTACTGCCCAATAAGTGATTGTATTTATTAAAGCTTA  240

seq1  TTAATATGAAAATCTAAAATTATAAGAGGTCTATATAAGAGTAGAGAAGG  296
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTAATATGAAAATCTAAAATTAT-AGAGGTCTATATAAGAGTAGAGAAGG  289

seq1  GGAATCACAAAAATTAATTTTTATATTTTGCTTTAGAAACTGCTTCTAAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATCACAAAAATTAATTTTTATATTTTGCTTTAGAAACTGCTTCTAAT  339

seq1  TCAGGTATGCCATAATACAACTTTCTTTCTTCAGGTTGTAAGGATATCAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTATGCCATAATACAACTTTCTTTCTTCAGGTTGTAAGGATATCAC  389

seq1  TTTTTAGTATTCAGAAATTTTTGAACTTTT-AATTTTAAATATTGATATA  445
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TTTTTAGTATTCAGAAATTTTTGAACTTTTAAATTTTAAATATTGATATA  439

seq1  AATTGGAGCCTTTTTTAAAAAACAGGTGCAGATATGAGAAAAAGATACAG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGAGCCTTTTTTAAAAAACAGGTGCAGATATGAGAAAAAGATACAG  489

seq1  GATACATGCTAGCAGTTGGCTTTTAAAGTTTTTAGTGATTACACTTTGAA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACATGCTAGCAGTTGGCTTTTAAAGTTTTTAGTGATTACACTTTGAA  539

seq1  ATAGAAATACAGTCCTGGCATTTTTCAGGATACACATGCATAATTAGCAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAATACAGTCCTGGCATTTTTCAGGATACACATGCATAATTAGCAA  589

seq1  TATTAATACTGGGAGGAAGCATTGTGAAGAGTAGCAGATTGTATCCTTGA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATACTGGGAGGAAGCATTGTGAAGAGTAGCAGATTGTATCCTTGA  639

seq1  TTATCCCATTGCTGGTGTTGCATTGGCTTCTTTGTTGGGGTGGGAGGTAA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCCATTGCTGGTGTTGCATTGGCTTCTTTGTTGGGGTGGGAGGTAA  689

seq1  ATTGTATTTCAGAAAAGGATGAAATAGAAAGCTGCTTTCAGGTAAATTTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTATTTCAGAAAAGGATGAAATAGAAAGCTGCTTTCAGGTAAATTTG  739

seq1  TATCTTTGCTCTAAAATGTCTTTGAAGATTCATGTTGAGAAAGCTTGTGA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTGCTCTAAAATGTCTTTGAAGATTCATGTTGAGAAAGCTTGTGA  789

seq1  AAATTCACAAAGCATATTTTCATTTAGTTGGCTGCTAAAAACTTGATTAA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCACAAAGCATATTTTCATTTAGTTGGCTGCTAAAAACTTGATTAA  839

seq1  TCTAGAAAAAAAAAGTGAAATTAATTTTTTTATAGTTTAATGTTTGTTCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAAAAAAAAAGTGAAATTAATTTTTTTATAGTTTAATGTTTGTTCT  889

seq1  TGAATATTGTTTAGTGTTTTTTTTTGTTAATTTGAGTTTATTCTGAATTT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATATTGTTTAGTGTTTTTTTTTGTTAATTTGAGTTTATTCTGAATTT  939

seq1  GGTTTTTAAAGTTCTATTTTTAATAATGTTATTTGGACAAATTCTCATAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTAAAGTTCTATTTTTAATAATGTTATTTGGACAAATTCTCATAA  989

seq1  CTGTAATCATATTTCAGTCATCAAGATACTTTATGAGCCATATATAACTA  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAATCATATTTCAGTCATCAAGATACTTTATGAGCCATATATAACTA  1039

seq1  CGCTAGCATTCTTTTCTGGGCAGCCGTAAAGTAAGTGCTGCTTTATATTA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTAGCATTCTTTTCTGGGCAGCCGTAAAGTAAGTGCTGCTTTATATTA  1089

seq1  CAGTGTATGTGACCATTTCTAATTTGACCTGTTACTGTAAAGAAGGCTAA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTATGTGACCATTTCTAATTTGACCTGTTACTGTAAAGAAGGCTAA  1139

seq1  CAAGTGTGTGTGACTAGCCCACCCCTTCTGGAGCAGTTGAAAACAGGCCT  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGTGTGTGACTAGCCCACCCCTTCTGGAGCAGTTGAAAACAGGCCT  1189

seq1  CAGAAGGCTCAAAGGAATTC  1215
      ||||||||||||||||||||
seq2  CAGAAGGCTCAAAGGAATTC  1209

seq1: chr4_44643797_44644985
seq2: B6Ng01-080C19.g_67_1266

seq1  GAATTCAGAGCACTGTGCAAGGGGTGAGGGTAAATACTATCTCAACACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGCACTGTGCAAGGGGTGAGGGTAAATACTATCTCAACACAT  50

seq1  TTTTTCATAATAAAAGTCCCTGCATGATAAAAGACAGAGAAAGCAGAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCATAATAAAAGTCCCTGCATGATAAAAGACAGAGAAAGCAGAGGG  100

seq1  ACAAACAAGTCCCAGAGTCTATTCGACACTGTCAACTTTGTTAACTCTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAGTCCCAGAGTCTATTCGACACTGTCAACTTTGTTAACTCTGT  150

seq1  CCCGTCCATCACTCACTTCCCACTGTCCAGTAAAGGCTGAAGGGAGCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTCCATCACTCACTTCCCACTGTCCAGTAAAGGCTGAAGGGAGCTCA  200

seq1  CATCATGAAAAAAAAATACAGAGAGGCATAGAGGGAAAAAGGAAAGCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATGAAAAAAAAATACAGAGAGGCATAGAGGGAAAAAGGAAAGCCCA  250

seq1  AAGCAGAGCCTAAAATGGGACCAAGGAGCCAGTGAGATGACTCAACAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGAGCCTAAAATGGGACCAAGGAGCCAGTGAGATGACTCAACAGGT  300

seq1  AAAGGCACCCACTTATTACCAAGCCTGACAACCTAAGTTGGATAGCCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCACCCACTTATTACCAAGCCTGACAACCTAAGTTGGATAGCCAGG  350

seq1  ATTCACATGGTAGAGAGAACAGACTCCTGTATCTTGTCCTCTGACCTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACATGGTAGAGAGAACAGACTCCTGTATCTTGTCCTCTGACCTCCA  400

seq1  CATGTGCACACAGACAAGATAAATATGGTGTAATTTTAAAGTGAGACCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCACACAGACAAGATAAATATGGTGTAATTTTAAAGTGAGACCAA  450

seq1  TAATAACCATAGCCAGCGATGAACACACACAGCATGGTATACATAGTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAACCATAGCCAGCGATGAACACACACAGCATGGTATACATAGTCTC  500

seq1  TATTTCATACAGATTCTCAGCCAAACCTCACACACCTAAAGAAAGCTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCATACAGATTCTCAGCCAAACCTCACACACCTAAAGAAAGCTAGC  550

seq1  TCTCGTTATGTCCCTTTTGTAGACAGACAGAGACTTAGCTCACAATCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGTTATGTCCCTTTTGTAGACAGACAGAGACTTAGCTCACAATCTGT  600

seq1  CTTAGGCTACTTAACACATCCAAGATCCTGCAGTTGGTTTTTGGAGCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGGCTACTTAACACATCCAAGATCCTGCAGTTGGTTTTTGGAGCTGG  650

seq1  GATGGAGCCCACACTCTCAATGGTCCCACTCCCCACACCCCCAAGACCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAGCCCACACTCTCAATGGTCCCACTCCCCACACCCCCAAGACCAA  700

seq1  GATCAAATGAGAGGCTTATGGCGTTGATGAAGGAGAAGCCACACTTGGTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAATGAGAGGCTTATGGCGTTGATGAAGGAGAAGCCACACTTGGTC  750

seq1  CTCACTGCCACCT-GGAGAAGAGAAACC-GGTGAGGCTTCTCACAGGCGG  798
      ||||||||||||| |||||||||||||| |||||||||||||||||||||
seq2  CTCACTGCCACCTGGGAGAAGAGAAACCGGGTGAGGCTTCTCACAGGCGG  800

seq1  TGAGAGGTGGACTGGGCATTACTTAGCGCTCTCTTACTTTCTCTCAGCCC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAGGTGGACTGGGCATTACTTAGCGCTCTCTTACTTTCTCTCAGCCC  850

seq1  AGTCACTATTTCTCATGGGCCTCCTAAGGCTTTGATGGGATCCATCTCCA  898
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGTCACTATTTCTCATGGGCCTCCTAAGGCTTTGAT-GGATCCATCTCCA  899

seq1  TGGTGATTTCCATAAGTGGCCTTCCACAGATAGAGTCAGGGACCACTTCA  948
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TGGTGATTTCCATAAGTGGCCTTCCACAGATAGAGTCA-GGACCACTTCA  948

seq1  AAGCGCAGTTCTGAGAATGACACTAAGGGCACCATCCAGGTGGCCCAGGC  998
      |||||||||||||||||||||||||||||||||||||| |||||||| ||
seq2  AAGCGCAGTTCTGAGAATGACACTAAGGGCACCATCCA-GTGGCCCATGC  997

seq1  ACCCAGCTGAAAGATTTAAGAGTAAGTGGAAGACAGAGAGGATGCACACT  1048
      |||||||||||||||||| |||||||| ||||||||||| ||||||||||
seq2  ACCCAGCTGAAAGATTTAGGAGTAAGT-GAAGACAGAGA-GATGCACACT  1045

seq1  GCCCAGAAATTCTCCCCAAG-TAT-CACCTGCATGAGCCAAAGCAAGCTG  1096
      |||||||||||||||||||| ||| |||||||||||  ||||||||||||
seq2  GCCCAGAAATTCTCCCCAAGTTATCCACCTGCATGA-TCAAAGCAAGCTG  1094

seq1  CCAT-GTCTTC-----AGGTAGA------TGC--AGACCCGGCTAGAAGA  1132
      |||| ||||||     |  ||||      |||  ||| |||||||||| |
seq2  CCATGGTCTTCACAGTATATAGATTTGTGTGCAAAGAACCGGCTAGAAAA  1144

seq1  GGTGCT-GTCTTGGAAAGCCAAGTGGCCTGAAGCCACCCACAGACAACGA  1181
      |  ||| ||| | | ||||||| |   ||||||||| |||||||||||||
seq2  GTGGCTGGTCCTTGTAAGCCAATT--ACTGAAGCCA-CCACAGACAACGA  1191

seq1  CCG-GAGAG  1189
      ||| |||||
seq2  CCGAGAGAG  1200