BAC Information

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BAC

Clone NameB6Ng01-080I04
Chromosome4 (Build37)
Map Location 87,246,866 - 87,378,054
singlet/doubletdoublet
Overlap genenone
Upstream gene6230416J20Rik, LOC100040388, Adfp, EG624685, Dennd4c, Rps6, Asah3l, Slc24a2
Downstream geneMllt3, BC057079, Ptplad2, Ifnb1, OTTMUSG00000007655, Ifna14, Ifna9, Mrpl48-ps, Ifna12, C87499, Ifna13, LOC546834, OTTMUSG00000011275, Ifna2, Ifnab, LOC546835, Klhl9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080I04.bB6Ng01-080I04.g
ACCDH895629DH895630
length670227
definitionDH895629|Mus musculus domesticus DNA, BAC clone: B6Ng01-080I04, 5' end.DH895630|Mus musculus domesticus DNA, BAC clone: B6Ng01-080I04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,377,385 - 87,378,054)(87,246,866 - 87,247,092)
sequence
gaattctttgcttttgattttgctgtgaacttaatttttaaaaagagttc
tattaaagaaaaaccaacataggaggaaatgctctccgtactatactaaa
ataaaagaccctggaaataagatgatgagccggtggtaatgacagttttg
tggaatcacacggggaggtggggaggtacctctaaggcacctctgagggc
tctgcttgtgggtcattaccttccttcctatattttcctgtgtttccaaa
attgatccttttacaatttaaaaagaaaaaaaaaggggggggggttctcc
agcaagaagagacaagaagcattttgcctgttctcagcctacagtctgga
aaggagactaagggtgtatttgcttgcttccagttcattaactaggctcc
tcttacctgcccaagcaacaagcactcaaagcacagcagcgtttactctt
gcttccttggagagcaactggcttcgtgtccttttccttgcggagaagag
gtaaaggaaggctctttgggtttttaatcccctcagctaattaccagaac
tttctagtggttttactgaggctcttttgactaagtgggtggatttacac
tgtttgtgtatgtgtgttgaacttggattatgccttaatgtgtcaccaaa
atgacagaggggtttgcaac
ttcttttcctttcctgatcattctgaattctgtccaaggggatgtttggt
ttgagtttttctttttctttttcttttccctattgaatgttctatcaatg
tctagattatatttgtgtattagtctagtcttatcctgttaacctagtat
taagtataagaaagttactttgttttacatatatatatatatatgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_87377385_87378054
seq2: B6Ng01-080I04.b_40_709 (reverse)

seq1  GTTGCAAACCCCTCTGTCATCTTGGTGACACATTAAGGCATAATCCAAGT  50
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GTTGCAAACCCCTCTGTCATTTTGGTGACACATTAAGGCATAATCCAAGT  50

seq1  TCAACACACAAACACAAACAGTGTAAATCCACCCACTTAGTCAAAAGAGC  100
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TCAACACACATACACAAACAGTGTAAATCCACCCACTTAGTCAAAAGAGC  100

seq1  CTCAGTAAAACCACTAGAAAGTTCTGGTAATTAGCTGAGGGGATTAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTAAAACCACTAGAAAGTTCTGGTAATTAGCTGAGGGGATTAAAAA  150

seq1  CCCAAAGAGCCTTCCTTTACCTCTTCTCCGCAAGGAAAAGGACACGAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGAGCCTTCCTTTACCTCTTCTCCGCAAGGAAAAGGACACGAAGC  200

seq1  CAGTTGCTCTCCAAGGAAGCAAGAGTAAACGCTGCTGTGCTTTGAGTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGCTCTCCAAGGAAGCAAGAGTAAACGCTGCTGTGCTTTGAGTGCT  250

seq1  TGTTGCTTGGGCAGGTAAGAGGAGCCTAGTTAATGAACTGGAAGCAAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTTGGGCAGGTAAGAGGAGCCTAGTTAATGAACTGGAAGCAAGCA  300

seq1  AATACACCCTTAGTCTCCTTTCCAGACTGTAGGCTGAGAACAGGCAAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACACCCTTAGTCTCCTTTCCAGACTGTAGGCTGAGAACAGGCAAAAT  350

seq1  GCTTCTTGTCTCTTCTTGCTGGAGAACCCCCCCCCCTTTTTTTTTCTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTGTCTCTTCTTGCTGGAGAACCCCCCCCCCTTTTTTTTTCTTTT  400

seq1  TAAATTGTAAAAGGATCAATTTTGGAAACACAGGAAAATATAGGAAGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTGTAAAAGGATCAATTTTGGAAACACAGGAAAATATAGGAAGGAA  450

seq1  GGTAATGACCCACAAGCAGAGCCCTCAGAGGTGCCTTAGAGGTACCTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAATGACCCACAAGCAGAGCCCTCAGAGGTGCCTTAGAGGTACCTCCC  500

seq1  CACCTCCCCGTGTGATTCCACAAAACTGTCATTACCACCGGCTCATCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCCCGTGTGATTCCACAAAACTGTCATTACCACCGGCTCATCATC  550

seq1  TTATTTCCAGGGTCTTTTATTTTAGTATAGTACGGAGAGCATTTCCTCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTCCAGGGTCTTTTATTTTAGTATAGTACGGAGAGCATTTCCTCCT  600

seq1  ATGTTGGTTTTTCTTTAATAGAACTCTTTTTAAAAATTAAGTTCACAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGGTTTTTCTTTAATAGAACTCTTTTTAAAAATTAAGTTCACAGCA  650

seq1  AAATCAAAAGCAAAGAATTC  670
      ||||||||||||||||||||
seq2  AAATCAAAAGCAAAGAATTC  670

seq1: chr4_87246866_87247092
seq2: B6Ng01-080I04.g_74_300

seq1  TTCTTTTCCTTTCCTGATCATTCTGAATTCTGTCCAAGGGGATGTTTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTTCCTTTCCTGATCATTCTGAATTCTGTCCAAGGGGATGTTTGGT  50

seq1  TTGAGTTTTTCTTTTTCTTTTTCTTTTCCCTATTGAATGTTCTATCAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTTTTCTTTTTCTTTTTCTTTTCCCTATTGAATGTTCTATCAATG  100

seq1  TCTAGATTATATTTGTGTATTAGTCTAGTCTTATCCTGTTAACCTAGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGATTATATTTGTGTATTAGTCTAGTCTTATCCTGTTAACCTAGTAT  150

seq1  TAAGTATAAGAAAGTTACTTTGTTTTACATATATATATATATATGTGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTATAAGAAAGTTACTTTGTTTTACATATATATATATATATGTGTGT  200

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTG  227
      |||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTG  227