BAC Information

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BAC

Clone NameB6Ng01-080J11
Chromosome4 (Build37)
Map Location 21,557,611 - 21,558,700
singlet/doubletsinglet
Overlap genenone
Upstream geneE130310K16Rik
Downstream genePrdm13, Ccnc, 2610029I01Rik, Usp45, 4930528A17Rik, 5730406M06Rik, Coq3, 6230409E13Rik, LOC100040379, Fbxl4, Pou3f2, LOC664911
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-080J11.bB6Ng01-080J11.g
ACCDH895685DH895686
length1,085819
definitionDH895685|Mus musculus domesticus DNA, BAC clone: B6Ng01-080J11, 5' end.DH895686|Mus musculus domesticus DNA, BAC clone: B6Ng01-080J11, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctctctattgacagtacagtgactatttgatccctgctcccaata
gtcaatattatacaatagtccagggagtgatttgttttgtaggaatattg
gaactatctgcaacgaagatggattttcctgtcttgctatgtgacatctt
atgaacaaacaataaagaataataataaaaaaatccttataattaccttg
taaactttctttgattttttttcaaatttaggaagaatgctaaacacgga
catactccagttaggaacaattttttaccagggaaatgacaaaatgataa
gtgccataaccttatacattttggctaaagtctgcttgagtttttcacct
tgtaaggttggtgtaccttctggatttgacactaatatcaaaccttgaca
tcaattccagtcttattgacagcaacttagagggagtcatgcagacattt
ttcttgccaaagtaaagtgcttgtttaaacaaactccatttttaggaatt
tgctggatgaaagtgattttaaccttggaactgataaacgccatcttgtc
tgagtatcagtgaaataaacatcagtctatccttagagcctgacatggag
gaggaatgacatcttaacttctttaaacatctccagagtcaataatagaa
cagtgttgtctttgtaagtaggatactttgaatcggtactcttcatgaga
gataggaaattttcattctcctgcaggaaaattcctggctaaggctttag
ggctcagcctaaaacacatgaatgttttgttgtcttgatttgaatttatc
ttagatgatgtctgaaaggtttatttattttttttttttttaaataattg
gaattgctagttcagtgcttctggagttggtgcttaaggacttagttttg
cagcctcacatttcacaactccctcttcttcttgaatatttccctgcttg
gttctatattgcgcgtgcccaactggccaggagacgacactgcaacagga
tccttctgcacacgtttatcagtcctgttcttctgttatatctccctcga
cctgggcctctccactcttttatactctcagttcc

gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaaat
gttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgaga
ttccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacag
cagatgctggcgagggtgtggagaaagaggaacactcctccattgttggt
gggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctc
aaaaaattggacatggtactaccggaggatccagcaatacctctcctggg
catatatccagaagatgccccaacgggtaagaaggacacatgctccacta
tgttcatagcagccttatttataatagccagaagctggaaagaacccaga
tgcccctcaaaagaggaatggatacagaaaatgtggtacatctacacaat
ggagtactactcagctattaaaaagaatgaatttatgaaattcctaggca
aaatggttggacctggagggcatcatcctgagtgaggtaacccaatcaca
aaagaactcaaatgaaatgtactcactgataagtggatattatcccagaa
acttagtatagtgagatataaggtacaatatgcaatacaaattgaaactg
aataagacgaagaccaaagtgtggacactttgctcctttcttagaattgg
aaacaatcacccatggaaggagttacagagacaatgtttggagcttagac
aaaaggttggaccatctgagattgccttattccagggatccatccccata
atttagcctcaaacgatga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_21557611_21558700
seq2: B6Ng01-080J11.b_45_1129 (reverse)

seq1  GGAACTGAGAGTATAAAAGAGT-GAGAGGCCCAGGGTTCGAGGGAGATAT  49
      |||||||||||||||||||||| ||||||||||||  |||||||||||||
seq2  GGAACTGAGAGTATAAAAGAGTGGAGAGGCCCAGG--TCGAGGGAGATAT  48

seq1  AAACAAGAAGAAACAGGACTGAATAAACGTGTGCAGAAGGATCCTGTTGC  99
      ||   ||||| |||||||||| ||||||||||||||||||||||||||||
seq2  AA--CAGAAG-AACAGGACTG-ATAAACGTGTGCAGAAGGATCCTGTTGC  94

seq1  AGTGTCGTTCTTCCTGGCCAGTTGGGCACGCGCAATATAGAACCAAGCAG  149
      ||||||||   |||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCGT--CTCCTGGCCAGTTGGGCACGCGCAATATAGAACCAAGCAG  142

seq1  GGAAATATTCAAGAAGAAGAGGGAGTTGTGAAATGTGAGGCTGCAAAACT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATATTCAAGAAGAAGAGGGAGTTGTGAAATGTGAGGCTGCAAAACT  192

seq1  AAGTCCTTAAGCACCAACTCCAGAAGCACTGAACTAGCAATTCCAATTAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCCTTAAGCACCAACTCCAGAAGCACTGAACTAGCAATTCCAATTAT  242

seq1  TT-AAAAAAAAAAAAATAAATAAACC-TTCAGACATCATCTAAGATAAAT  297
      || ||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTAAAAAAAAAAAAAATAAATAAACCTTTCAGACATCATCTAAGATAAAT  292

seq1  TCAAATCAAGACAACAAAACATTCATGTGTTTTAGGCTGAGCCCTAAAGC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATCAAGACAACAAAACATTCATGTGTTTTAGGCTGAGCCCTAAAGC  342

seq1  CTTAGCCAGGAATTTTCCTGCAGGAGAATGAAAATTTCCTATCTCTCATG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGCCAGGAATTTTCCTGCAGGAGAATGAAAATTTCCTATCTCTCATG  392

seq1  AAGAGTACCGATTCAAAGTATCCTACTTACAAAGACAACACTGTTCTATT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTACCGATTCAAAGTATCCTACTTACAAAGACAACACTGTTCTATT  442

seq1  ATTGACTCTGGAGATGTTTAAAGAAGTTAAGATGTCATTCCTCCTCCATG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACTCTGGAGATGTTTAAAGAAGTTAAGATGTCATTCCTCCTCCATG  492

seq1  TCAGGCTCTAAGGATAGACTGATGTTTATTTCACTGATACTCAGACAAGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCTCTAAGGATAGACTGATGTTTATTTCACTGATACTCAGACAAGA  542

seq1  TGGCGTTTATCAGTTCCAAGGTTAAAATCACTTTCATCCAGCAAATTCCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGTTTATCAGTTCCAAGGTTAAAATCACTTTCATCCAGCAAATTCCT  592

seq1  AAAAATGGAGTTTGTTTAAACAAGCACTTTACTTTGGCAAGAAAAATGTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGGAGTTTGTTTAAACAAGCACTTTACTTTGGCAAGAAAAATGTC  642

seq1  TGCATGACTCCCTCTAAGTTGCTGTCAATAAGACTGGAATTGATGTCAAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGACTCCCTCTAAGTTGCTGTCAATAAGACTGGAATTGATGTCAAG  692

seq1  GTTTGATATTAGTGTCAAATCCAGAAGGTACACCAACCTTACAAGGTGAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGATATTAGTGTCAAATCCAGAAGGTACACCAACCTTACAAGGTGAA  742

seq1  AAACTCAAGCAGACTTTAGCCAAAATGTATAAGGTTATGGCACTTATCAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCAAGCAGACTTTAGCCAAAATGTATAAGGTTATGGCACTTATCAT  792

seq1  TTTGTCATTTCCCTGGTAAAAAATTGTTCCTAACTGGAGTATGTCCGTGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCATTTCCCTGGTAAAAAATTGTTCCTAACTGGAGTATGTCCGTGT  842

seq1  TTAGCATTCTTCCTAAATTTGAAAAAAAATCAAAGAAAGTTTACAAGGTA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATTCTTCCTAAATTTGAAAAAAAATCAAAGAAAGTTTACAAGGTA  892

seq1  ATTATAAGGATTTTTTTATTATTATTCTTTATTGTTTGTTCATAAGATGT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAAGGATTTTTTTATTATTATTCTTTATTGTTTGTTCATAAGATGT  942

seq1  CACATAGCAAGACAGGAAAATCCATCTTCGTTGCAGATAGTTCCAATATT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATAGCAAGACAGGAAAATCCATCTTCGTTGCAGATAGTTCCAATATT  992

seq1  CCTACAAAACAAATCACTCCCTGGACTATTGTATAATATTGACTATTGGG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACAAAACAAATCACTCCCTGGACTATTGTATAATATTGACTATTGGG  1042

seq1  AGCAGGGATCAAATAGTCACTGTACTGTCAATAGAGAGAATTC  1090
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGATCAAATAGTCACTGTACTGTCAATAGAGAGAATTC  1085


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