BAC Information

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BAC

Clone NameB6Ng01-084F18
Chromosome6 (Build37)4 (Build37)
Map Location 18,835,452 - 18,835,96821,283,451 - 21,284,298
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSt7, Wnt2, Asz1, LOC386426, LOC636450, LOC100040751, Cftr, Cttnbp2, EG545829, Lsm8, Ankrd7
Downstream geneLOC626180, Eif3s6-ps4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-084F18.bB6Ng01-084F18.g
ACCDH898343DH898344
length9921,144
definitionDH898343|Mus musculus domesticus DNA, BAC clone: B6Ng01-084F18, 5' end.DH898344|Mus musculus domesticus DNA, BAC clone: B6Ng01-084F18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(18,835,452 - 18,835,968)(21,283,451 - 21,284,298)
sequence
gaattctttgttcagttctgagccccattttttaatggggttgttcgata
ttctgaagtccaccttcttgggttctttatatatgttggatattagcccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcctgtagacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacatgccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgcctctggttttatgtgaagttctttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccgccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagaca
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttccttaatttctttcttcagagatttgaagtttttatcata
cagatctttcacttccttagtagagttacgccaagatatttatactattg
tgactattgagacggtgttgtttccctaattctttctcagcc
gaattctggggactcttcagatgctatataaatgttaaaagtcgaaatgg
ggataacttgtggctagttggtggttggatactgttgattgctgttggtt
gtggatagttgcagtttcccatgtaattgcctgcaaagagaagaaattag
atattctttaaaaaaaaaaaaagaaagaaaagaaaagaaaaaagaaatta
gatattctgacagtgaagatcaaacttgcccccaaggaacttgacacacc
tgctcagcggaaagtagtctaataatgtcattaccccctcactttattca
ggaatttctttcttcctctctcccttctatccttctttctctcctaccca
gtgttagggggttgaaaggaaagaagatgaaaaaagagtggagggtggaa
gaaagaactcacaaaatagccaaaatgctggctccaatcatgaccaaaag
caactcgaggtagaaatggcttatttcatcttacaatgtatatatagtcc
ataatctagagaagtcagagcaggaacacacggcacaaacctggaggcag
gaaatgattaatgcacaggccatgaaggagtgatgtttactgtcttgtcc
ccaatgtctttctcagcctgttttcttataatatccaggatcatcgtttc
aggggtcaaactgcccacagtgatctggaccaaataatagcaatcattaa
ttttaaaaaaatctatacagacttctctataggcaaggcttatggaggca
ttttctcaattaagggcctctcttcccagatatttctaggtttgtaccaa
gttgacaaatccagcccattagtataggctcaccattgcattcaatgacg
tattaccccattgtcaagttcactggttaagtgcagtatattgacccctt
tgggatcagtaattcactttggggtaaaatgacatattagcgagcttgtc
actaaacctcagtgaaagaaaatagtaaagataaacacagtaagctctac
ctaggagagacagagctctgcagaaagcagagtgagaacaagctgcagcc
tctctcatcagtacatgagaatccacaggtaaacaagcagaaaccacagt
aaaacacttacagcttcttcctaatcccaacctgccacaccaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_18835452_18835968
seq2: B6Ng01-084F18.b_53_570 (reverse)

seq1  ACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACACACCTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATC  50

seq1  CAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGAAGAAAGACAGCATTTTCAACAATTGGTGCTGGCACAACTGGTT  100

seq1  GTTATCTTGTAGAAGAATGTGAATCGATCCATACTTATCTCCATGTACTA  150
      |||||| |||||||||||| |||||||||||||||||||||| |||||||
seq2  GTTATCATGTAGAAGAATGCGAATCGATCCATACTTATCTCCTTGTACTA  150

seq1  AGGTCAAATCTAAGTGGATCAAGGAACTTCACATAAAACCAGAGACACTG  200
      |||||||||||||||||||||| ||||||||||||||||||||| |||||
seq2  AGGTCAAATCTAAGTGGATCAAAGAACTTCACATAAAACCAGAGGCACTG  200

seq1  AAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCAGAGG  250
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AAACTTATAGAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGGCACAGG  250

seq1  GGAAAAGTTCCTGAACAGAACAGCAATGGC-TGTGCTGTGAGGTAGAGAA  299
      |||||| ||||||||||||||||||||||| |||||||| || | |||||
seq2  GGAAAAATTCCTGAACAGAACAGCAATGGCATGTGCTGTAAGATCGAGAA  300

seq1  TCGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGAC  349
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAAATGGGACCTAATGAAACTCCAAAGTTTCTGCAAGGCAAAAGAC  350

seq1  ACCGTCAATAAGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTAC  399
      |||||| | | |||||||||||||||||||||||||||||||||||||||
seq2  ACCGTCTACAGGACAAAAAGACCACCAACAGATTGGGAAAGGATCTTTAC  400

seq1  CTATCCTAAATCAGATAGGGGACTAATATCCAACATATATAAAGAACTCA  449
      ||||||||||||||||||||| ||||||||||||||||||||||||| ||
seq2  CTATCCTAAATCAGATAGGGGGCTAATATCCAACATATATAAAGAACCCA  450

seq1  AGAAGGTGGACTTCAGAAAATCAAATAACCCCATTAATAAATGGGGCTCA  499
      |||||||||||||||||| ||| || ||||||||||| ||||||||||||
seq2  AGAAGGTGGACTTCAGAATATCGAACAACCCCATTAAAAAATGGGGCTCA  500

seq1  GAACTGAACAAAGAATTC  517
      ||||||||||||||||||
seq2  GAACTGAACAAAGAATTC  518

seq1: chr4_21283451_21284298
seq2: B6Ng01-084F18.g_387_1211

seq1  CTCCCTTCTATCCTTCTTTCTCTCCTACCCAGTGTTAGGGGGTTGAAAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTCTATCCTTCTTTCTCTCCTACCCAGTGTTAGGGGGTTGAAAGG  50

seq1  AAAGAAGATGAAAAAAGAGTGGAGGGTGGAAGAAAGAACTCACAAAATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAGATGAAAAAAGAGTGGAGGGTGGAAGAAAGAACTCACAAAATAG  100

seq1  CCAAAATGCTGGCTCCAATCATGACCAAAAGCAACTCGAGGTAGAAATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATGCTGGCTCCAATCATGACCAAAAGCAACTCGAGGTAGAAATGG  150

seq1  CTTATTTCATCTTACAATGTATATATAGTCCATAATCTAGAGAAGTCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATTTCATCTTACAATGTATATATAGTCCATAATCTAGAGAAGTCAGA  200

seq1  GCAGGAACACACGGCACAAACCTGGAGGCAGGAAATGATTAATGCACAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGAACACACGGCACAAACCTGGAGGCAGGAAATGATTAATGCACAGG  250

seq1  CCATGAAGGAGTGATGTTTACTGTCTTGTCCCCAATGTCTTTCTCAGCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAAGGAGTGATGTTTACTGTCTTGTCCCCAATGTCTTTCTCAGCCT  300

seq1  GTTTTCTTATAATATCCAGGATCATCGTTTCAGGGGTCAAACTGCCCACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTTATAATATCCAGGATCATCGTTTCAGGGGTCAAACTGCCCACA  350

seq1  GTGATCTGGACCAAATAATAGCAATCATTAATTTTAAAAAAATCTATACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCTGGACCAAATAATAGCAATCATTAATTTTAAAAAAATCTATACA  400

seq1  GACTTCTCTATAGGCAAGGCTTATGGAGGCATTTTCTCAATTAAGGGCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCTCTATAGGCAAGGCTTATGGAGGCATTTTCTCAATTAAGGGCCT  450

seq1  CTCTTCCCAGATATTTCTAGGTTTGTACCAAGTTGACAAATCCAGCCCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCCAGATATTTCTAGGTTTGTACCAAGTTGACAAATCCAGCCCAT  500

seq1  TAGTATAGGCTCACCATTGCATTCAATGACGTATTACCCCATTGTCAAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATAGGCTCACCATTGCATTCAATGACGTATTACCCCATTGTCAAGT  550

seq1  TCACTGGTTAAGTGCAGTATATTGACCCC-TTGGGATCAGTAATTCACTT  599
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  TCACTGGTTAAGTGCAGTATATTGACCCCTTTGGGATCAGTAATTCACTT  600

seq1  TGGGGTAAAATGACATATTAGCGAGCTTGTCACTAAACCTCAGTGAAAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTAAAATGACATATTAGCGAGCTTGTCACTAAACCTCAGTGAAAGA  650

seq1  AAATAGTAAAGATAAAACACAGTAAGCTCTTACCTTAGGAGAGACAAGAG  699
      ||||||||||||| ||||||||||||||| |||| |||||||||| ||| 
seq2  AAATAGTAAAGAT-AAACACAGTAAGCTC-TACC-TAGGAGAGAC-AGA-  695

seq1  GCTCTGCAGGAAAGCAAGAGTGAGAACAAAGCTGCAAGCCTCTCTCCATC  749
      |||||||| |||||| ||||||||||| ||||||| ||||||||| ||||
seq2  GCTCTGCA-GAAAGC-AGAGTGAGAAC-AAGCTGC-AGCCTCTCT-CATC  740

seq1  AGTACCATGAGGATTCACAGGTAAAACAAAGGCAGGAAACCACCAGGAAA  799
      |||| |||||| || ||||||| ||||||  ||| ||||||| ||| |||
seq2  AGTA-CATGAGAATCCACAGGT-AAACAA--GCA-GAAACCA-CAGTAAA  784

seq1  ACACTTACCAGCTCCTCTCCCCTCAACCCCCACCCCTGCCACACACACA  848
      ||||||| |||||  ||| ||   || ||| |  |||||||||| ||||
seq2  ACACTTA-CAGCT--TCTTCC--TAATCCCAA--CCTGCCACAC-CACA  825