BAC Information

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BAC

Clone NameB6Ng01-085E06
Chromosome4 (Build37)
Map Location 67,129,671 - 67,130,850
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667499, Tlr4, LOC100039379
Downstream geneHmgb1-rs18, LOC433715, Tcp1-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-085E06.bB6Ng01-085E06.g
ACCDH898988DH898989
length1,2551,153
definitionDH898988|Mus musculus domesticus DNA, BAC clone: B6Ng01-085E06, 5' end.DH898989|Mus musculus domesticus DNA, BAC clone: B6Ng01-085E06, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtagccaacatcaaagtaaatggtgagaagcttgaagcaatcccattaaa
atcagggactagacaaggctacccattttctccctacctattcaacattg
tacttgaagtcctagccagagcaattcaaaaacaaaaggagatcagggga
tagaaattggaaaagaagtcaaaatatcactttttgcagatgatatgata
gtatatataaggaccctaaaaattccaccagagaactcctaaacctgata
aacagctttggtgaagtagctggatatagaattaactcaaacaaatcaat
ggcctttctctacacaaagaataaacaggctgagaaagaaattagggaaa
caacacccttcacaatcgtcacaaataatataaaataccttgaccttggc
gtgactctaactaaggtagtgaacgatctgtatgataaaaacttcaaggc
tctgaagaaagaaattaaagaggatctcaaaagatagaaagatctcacat
gctcatggattggcaggatcaacaatgtaaaaatggctatcttgccaaaa
gcaatctatagattcagtccaatcctcatcaaaattccaactcaattctt
caatgaattagaaagagcaatctgcaaactcatctggaataacaaaaaac
ctaggatagcaaaaactcttctcaaggataaaagtacctctggtggaatc
accatgcttgccttaaagctgtactacagagcaactgtgattaaaaactg
catgatgctggtatagtgacagacaagtagaccaatggaatagaattgaa
gacccagaaatgaagccacacacctatggtcacttgatctttgacaaggg
agctaaaacatccagtggtaaatggacagtattttcaacaaaagtgctgg
cacaactggtggttatcatgtagaaaatgcaaatgatccattcctatctc
cttgtactaaagtgaaatttagtatatcagagctgcacataaagcagaga
aactgaactataagtgtagaaaggtggggaaaggctcgagattgggttac
aggggaaacattcttgaatagaacgcatgcttgtgctgtatattgagatg
acaatgaacctcatggaactgcaagcctttctgtagcatagacctcataa
gataacgggaccccacgattgagaccttaccatccttaaccgagataggg
gacta
gaattctctggagagtaatatacaatggatatttcctctataatcttaag
tacttaccacctatgacataatgagcacataactcaataaatggatggat
caataaacctgcttggattaaaattggaggggctttgtcttaatgaagta
aaaaaaaaaaaaaaagctacttaatttttctaggattccttcaattcctt
ttttatgcatctgtacccaaccccaaaatttattatcttcaaccatcctt
cctccttctctcgatgtgacccttgatatttaaataacctaatctacttt
attaatttacgtatcctttaataatgatttggcacaaaacaatgttttgc
ttccctaatgttagcactcatcacaatgtagatatattgagtaaactaac
tgctatttgttttaaagttatacagattttgaatcaatcacgaatatatg
cagagcattacattgggtgacatgtagagaggatgaaggtaggaattttg
cttatacttagagctatgacaacactgagtttggaacagatacaaaacag
ttactcatcaaacagagtacaagtagactttggaaaatatctactgcatt
aaacttccacagcatccatctgagttcaaattctactttgatttacagaa
tgtacaatactatgcacatcagttaactattgaacccttatctcattagc
tgtaatatgggaaccaatttcaatacctcttaaagatttttaggtacttc
aattatatttcccttatcaagtgattagtccagtgtctggcatacagttt
gttttcaaaaagccctaaaatttattattgtcattagtataaataagaca
ccattagatgataaatatgaagtaattgactgtgcaaatcatgtgttaat
gtaattatggtaaattaaattaatatctgcttctgtactagttaggaaca
atgtgcttgtgtttctctactttagacccagctttcaaaaaagatgtttc
actgtagcaggaaatcaataaatgtgtcaagatctactattttcgatctc
tgatgtattaacttgtcctatattcctgcatttattcagatattttccta
gtaatgaaagagatttgattaggagatatttttgttgagacatctcaact
aac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_67129671_67130850
seq2: B6Ng01-085E06.g_72_1224

seq1  GAATTCTCTGGAGAGTAATATACAATGGATATTTCCTCTATAATCTTAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGGAGAGTAATATACAATGGATATTTCCTCTATAATCTTAAG  50

seq1  TACTTACCACCTATGACATAATGAGCACATAACTCAATAAATGGATGGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTACCACCTATGACATAATGAGCACATAACTCAATAAATGGATGGAT  100

seq1  CAATAAACCTGCTTGGATTAAAATTGGAGGGGCTTTGTCTTAATGAAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAACCTGCTTGGATTAAAATTGGAGGGGCTTTGTCTTAATGAAGTA  150

seq1  AAAAAAAAAAAAAAAGCTACTTAATTTTTCTAGGATTCCTTCAATTCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAGCTACTTAATTTTTCTAGGATTCCTTCAATTCCTT  200

seq1  TTTTATGCATCTGTACCCAACCCCAAAATTTATTATCTTCAACCATCCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGCATCTGTACCCAACCCCAAAATTTATTATCTTCAACCATCCTT  250

seq1  CCTCCTTCTCTCGATGTGACCCTTGATATTTAAATAACCTAATCTACTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTCTCTCGATGTGACCCTTGATATTTAAATAACCTAATCTACTTT  300

seq1  ATTAATTTACGTATCCTTTAATAATGATTTGGCACAAAACAATGTTTTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTTACGTATCCTTTAATAATGATTTGGCACAAAACAATGTTTTGC  350

seq1  TTCCCTAATGTTAGCACTCATCACAATGTAGATATATTGAGTAAACTAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTAATGTTAGCACTCATCACAATGTAGATATATTGAGTAAACTAAC  400

seq1  TGCTATTTGTTTTAAAGTTATACAGATTTTGAATCAATCACGAATATATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATTTGTTTTAAAGTTATACAGATTTTGAATCAATCACGAATATATG  450

seq1  CAGAGCATTACATTGGGTGACATGTAGAGAGGATGAAGGTAGGAATTTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCATTACATTGGGTGACATGTAGAGAGGATGAAGGTAGGAATTTTG  500

seq1  CTTATACTTAGAGCTATGACAACACTGAGTTTGGAACAGATACAAAACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATACTTAGAGCTATGACAACACTGAGTTTGGAACAGATACAAAACAG  550

seq1  TTACTCATCAAACAGAGTACAAGTAGACTTTGGAAAATATCTACTGCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTCATCAAACAGAGTACAAGTAGACTTTGGAAAATATCTACTGCATT  600

seq1  AAACTTCCACAGCATCCATCTGAGTTCAAATTCTACTTTGATTTACAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCCACAGCATCCATCTGAGTTCAAATTCTACTTTGATTTACAGAA  650

seq1  TGTACAATACTATGCACATCAGTTAACTATTGAACCCTTATCTCATTAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAATACTATGCACATCAGTTAACTATTGAACCCTTATCTCATTAGC  700

seq1  TGTAATATGGGAACCAATTTCAATACCTCTTAAAGATTTTTAGGTACTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATATGGGAACCAATTTCAATACCTCTTAAAGATTTTTAGGTACTTC  750

seq1  AATTATATTTCCCTTATCAAGTGATTAGTCCAGTGTCTGGCATACAGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATATTTCCCTTATCAAGTGATTAGTCCAGTGTCTGGCATACAGTTT  800

seq1  GTTTTCAAAAAGCCCTAAAATTTATTATTGTCATTAGTATAAATAAGACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCAAAAAGCCCTAAAATTTATTATTGTCATTAGTATAAATAAGACA  850

seq1  CCATTAGATGATAAAATATGAAGTAATTGACTGTGCAAAATCATGTGTTA  900
      |||||||||||| ||||||||||||||||||||||| |||||||||||||
seq2  CCATTAGATGAT-AAATATGAAGTAATTGACTGTGC-AAATCATGTGTTA  898

seq1  ATGTAATTATGGTAAATTAAATTAATATCTGCTTCTGTTACTAGTTAGGA  950
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  ATGTAATTATGGTAAATTAAATTAATATCTGCTTCTG-TACTAGTTAGGA  947

seq1  ACAATGTGCTTGTGTTTCTCCTACTTTAAGACCCAGCTATCAAAAAAGAT  1000
      ||||||||||||||||||| ||||||| |||||||||| |||||||||||
seq2  ACAATGTGCTTGTGTTTCT-CTACTTT-AGACCCAGCTTTCAAAAAAGAT  995

seq1  GTTTCACTGTAAGCAGGGAAATCAATAAAATGTGTCATAGATCCTACATA  1050
      |||||||||| |||| |||||||||| |||||||||| |||| |||| ||
seq2  GTTTCACTGT-AGCA-GGAAATCAAT-AAATGTGTCA-AGAT-CTAC-TA  1039

seq1  TTTTCGAATCTCTGATGTAATTAAACTTGTCTTAATTATTCCTTGCATTT  1100
      |||||| ||||||||||||  | |||||||| ||  |||||| |||| ||
seq2  TTTTCG-ATCTCTGATGTA--TTAACTTGTCCTA--TATTCC-TGCA-TT  1082

seq1  TATTTCAAGATATTTTTCCTAGTAACTGGAAAAGAGATTTGAATTTAGGA  1150
      ||||   ||||| |||||||||||| ||  ||||||||||||  ||||||
seq2  TATT--CAGATA-TTTTCCTAGTAA-TG--AAAGAGATTTGA--TTAGGA  1124

seq1  GATATTTTGTTTGAGGACTACTCAACTAAC  1180
      ||||||||  |||| |||  ||||||||||
seq2  GATATTTTTGTTGA-GACATCTCAACTAAC  1153