BAC Information

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BAC

Clone NameB6Ng01-086B24
Chromosome4 (Build37)
Map Location 49,624,262 - 49,732,795
singlet/doubletdoublet
Overlap geneRnf20, Ppp3r2
Upstream geneTmeff1, 2310039E09Rik, E130309F12Rik, LOC666602, Rbpsuh-ps1, C730036D15Rik, LOC100040919, LOC666617, Rbpsuh-ps2, LOC230161, Baat, Mrpl50, Zfp189, Aldob, 2810432L12Rik, LOC100040742
Downstream geneLOC666663
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086B24.bB6Ng01-086B24.g
ACCDH899609DH899610
length1,0851,057
definitionDH899609|Mus musculus domesticus DNA, BAC clone: B6Ng01-086B24, 5' end.DH899610|Mus musculus domesticus DNA, BAC clone: B6Ng01-086B24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,731,709 - 49,732,795)(49,624,262 - 49,625,328)
sequence
gaattctactagggagtcaacaagatgactaaagtaaaggaaattgccac
caaccatgatgaactgaatttaatttccaagacccacatagtggaaggaa
atacgtgattcctataggctgtcccctgacctccaaatgcatatcatgga
ctgtgtgtctccccaccttacccccctagcaaaaacaaaaaccacacaaa
acaatcaaacaacaacaaaacatgtatgtaagtgtagaaacattcttgaa
aaaatagaaaaacattcactgggttttcaatgtgaaacaaaataactgtt
tctacattcagtttgtcattcacatctctttccttctgaggctagaacaa
ccactgttgtgcccacaaatacaataaagcatatatctgtatgtctgcac
tctttgtgtgaatgttagtgcctccaggtgtttgaaatatgctcagttgt
tgaattgtgaatcataatgggaaattcaaagattttaaatgagtactgaa
tattagagccatttctttttctccctggtagcttcatcatccttctcaag
gttttcgttttggaactgtccgggaaagcagtgctgaggactatgtacgg
cagagcttcccagagatgcatgagtacatgagaaggtacaatgtaccagc
cacccctgatggagtgcagtacctgaagtaagtgacagcctcttggacct
taaaagttcccatgaaagagaaatagtttgggctttgcttttttttttca
atataatggacaaaaattcctattgttatgttcacaaataacacatccag
ggtctatgcaagtatcttagtcagtaaaatgcttgtgcaagcttgagaag
gtagatttgggtccctagcatctgggtaagactcaagaaagggtaaacac
acactttcagtgctgtgcaggtaaagacaagaggatccctgggtcttgtt
ggccagccagtctaaccaactcaatgaatttcagactcagtgagagactt
tatctcaaaaaataaggaagagcagattgagagacagcaggtgtcaactt
ctttctagcttaccaagaggggagagaggagacaa
gaattccctaggcacctacttctggatgcagctgcttacaggcttccatt
gctgcacctgcctgccttcttgctttctaactcagaaagcaaaacttggt
tctttctcccctttcccttgccttctttccagccattgtcaaggtctcca
gctttcatgatcaggatcttttaaaaaattctttagccatgagacaggga
atgtgcaaaaggaactctgtgtctcatggtgacattaggtttctgtgctt
gtgtcttgacaataaccatcaacaatttgggggagcccaaatttccttta
tgtgcttcaactttagaaatataagctggtattttttttttttaatttat
ctgacttcaagtcatactaattacagcttcatgttcctataggtctgcca
ttgaatccagcagagttgcctcttggtgggaatccagatgtcagtagttg
ccatatagaataaagtttgtctactacacataaggagacttctgagaatc
acttccaaagcttgggcagagagcagtctatctgggcagggaatgtgtac
tcagggagggagcagcacacctgggtgtggatgagtccacccaggaacat
gctccttcatgctctctcttcttcccaaaggaatttggcatcaaaatgaa
ggaaagttttcttctggcaaactttcagagtgatgcatgctctttaggat
gttttgtgggaaacaactttaaaaagttgtgttagaaaagtaacttcatt
ttggggaacagggtactgaacaggaggcaaggcctgcacatcttctttct
tggggtgttagtggataaaaagttaatttgtgacaatttgtccagttttc
tgaaaagatatcaaacttggttagcatgtatcttcttaaacttcctatgt
aaatataatagcagccccatgagctagatggcacaacagatagggcactc
acctccagactgaggagagagctacttcttgagtgtctcgactttcacgt
gcacctacacatatacaacacagctagttaaatatagagagcatgccatc
acagttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_49731709_49732795
seq2: B6Ng01-086B24.b_50_1134 (reverse)

seq1  TTGTCT-CTCTCTCCCCTCTTTGTGTAGGCTAG-AAGAAGTTGACACCTG  48
      |||||| ||||||||||||||   ||| ||||| ||||||||||||||||
seq2  TTGTCTCCTCTCTCCCCTCTT--GGTAAGCTAGAAAGAAGTTGACACCTG  48

seq1  CTGTCTTCCTCAATCTTGCTCTTCCTTATTTTTTGAGATAAAGTCTCTCA  98
      ||||||  ||||||| ||||||||||||||||||||||||||||||||||
seq2  CTGTCT--CTCAATC-TGCTCTTCCTTATTTTTTGAGATAAAGTCTCTCA  95

seq1  CTGAGTCTGAAATTCATTGAGTTGGTTAGACTGGCTGGCCAACAAGACCC  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTCTGAAATTCATTGAGTTGGTTAGACTGGCTGGCCAACAAGACCC  145

seq1  AGGGATCCTCTTGTCTTTACCTGCACAGCACTGAAAGTGTGTGTTTACCC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATCCTCTTGTCTTTACCTGCACAGCACTGAAAGTGTGTGTTTACCC  195

seq1  -TTCTTGAGTCTTACCCAGATGCTAGGGACCCAAATCTACCTTCTCAAGC  247
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTGAGTCTTACCCAGATGCTAGGGACCCAAATCTACCTTCTCAAGC  245

seq1  TTGCACAAGCATTTTACTGACTAAGATACTTGCATAGACCCTGGATGTGT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACAAGCATTTTACTGACTAAGATACTTGCATAGACCCTGGATGTGT  295

seq1  TATTTGTGAACATAACAATAGGAATTTTTGTCCATTATATTGAAAAAAAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGTGAACATAACAATAGGAATTTTTGTCCATTATATTGAAAAAAAA  345

seq1  AAGCAAAGCCCAAACTATTTCTCTTTCATGGGAACTTTTAAGGTCCAAGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAGCCCAAACTATTTCTCTTTCATGGGAACTTTTAAGGTCCAAGA  395

seq1  GGCTGTCACTTACTTCAGGTACTGCACTCCATCAGGGGTGGCTGGTACAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGTCACTTACTTCAGGTACTGCACTCCATCAGGGGTGGCTGGTACAT  445

seq1  TGTACCTTCTCATGTACTCATGCATCTCTGGGAAGCTCTGCCGTACATAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCTTCTCATGTACTCATGCATCTCTGGGAAGCTCTGCCGTACATAG  495

seq1  TCCTCAGCACTGCTTTCCCGGACAGTTCCAAAACGAAAACCTTGAGAAGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAGCACTGCTTTCCCGGACAGTTCCAAAACGAAAACCTTGAGAAGG  545

seq1  ATGATGAAGCTACCAGGGAGAAAAAGAAATGGCTCTAATATTCAGTACTC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGAAGCTACCAGGGAGAAAAAGAAATGGCTCTAATATTCAGTACTC  595

seq1  ATTTAAAATCTTTGAATTTCCCATTATGATTCACAATTCAACAACTGAGC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAATCTTTGAATTTCCCATTATGATTCACAATTCAACAACTGAGC  645

seq1  ATATTTCAAACACCTGGAGGCACTAACATTCACACAAAGAGTGCAGACAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCAAACACCTGGAGGCACTAACATTCACACAAAGAGTGCAGACAT  695

seq1  ACAGATATATGCTTTATTGTATTTGTGGGCACAACAGTGGTTGTTCTAGC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATATATGCTTTATTGTATTTGTGGGCACAACAGTGGTTGTTCTAGC  745

seq1  CTCAGAAGGAAAGAGATGTGAATGACAAACTGAATGTAGAAACAGTTATT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAAGGAAAGAGATGTGAATGACAAACTGAATGTAGAAACAGTTATT  795

seq1  TTGTTTCACATTGAAAACCCAGTGAATGTTTTTCTATTTTTTCAAGAATG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCACATTGAAAACCCAGTGAATGTTTTTCTATTTTTTCAAGAATG  845

seq1  TTTCTACACTTACATACATGTTTTGTTGTTGTTTGATTGTTTTGTGTGGT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACACTTACATACATGTTTTGTTGTTGTTTGATTGTTTTGTGTGGT  895

seq1  TTTTGTTTTTGCTAGGGGGGTAAGGTGGGGAGACACACAGTCCATGATAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTTTTTGCTAGGGGGGTAAGGTGGGGAGACACACAGTCCATGATAT  945

seq1  GCATTTGGAGGTCAGGGGACAGCCTATAGGAATCACGTATTTCCTTCCAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTGGAGGTCAGGGGACAGCCTATAGGAATCACGTATTTCCTTCCAC  995

seq1  TATGTGGGTCTTGGAAATTAAATTCAGTTCATCATGGTTGGTGGCAATTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGGGTCTTGGAAATTAAATTCAGTTCATCATGGTTGGTGGCAATTT  1045

seq1  CCTTTACTTTAGTCATCTTGTTGACTCCCTAGTAGAATTC  1087
      ||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTACTTTAGTCATCTTGTTGACTCCCTAGTAGAATTC  1085

seq1: chr4_49624262_49625328
seq2: B6Ng01-086B24.g_66_1122

seq1  GAATTCCCTAGGCACCTACTTCTGGATGCAGCTGCTTACAGGCTTCCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTAGGCACCTACTTCTGGATGCAGCTGCTTACAGGCTTCCATT  50

seq1  GCTGCACCTGCCTGCCTTCTTGCTTTCTAACTCAGAAAGCAAAACTTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCACCTGCCTGCCTTCTTGCTTTCTAACTCAGAAAGCAAAACTTGGT  100

seq1  TCTTTCTCCCCTTTCCCTTGCCTTCTTTCCAGCCATTGTCAAGGTCTCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTCCCCTTTCCCTTGCCTTCTTTCCAGCCATTGTCAAGGTCTCCA  150

seq1  GCTTTCATGATCAGGATCTTTTAAAAAATTCTTTAGCCATGAGACAGGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCATGATCAGGATCTTTTAAAAAATTCTTTAGCCATGAGACAGGGA  200

seq1  ATGTGCAAAAGGAACTCTGTGTCTCATGGTGACATTAGGTTTCTGTGCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCAAAAGGAACTCTGTGTCTCATGGTGACATTAGGTTTCTGTGCTT  250

seq1  GTGTCTTGACAATAACCATCAACAATTTGGGGGAGCCCAAATTTCCTTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTTGACAATAACCATCAACAATTTGGGGGAGCCCAAATTTCCTTTA  300

seq1  TGTGCTTCAACTTTAGAAATATAAGCTGGTATTTTTTTTTTTTAATTTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTCAACTTTAGAAATATAAGCTGGTATTTTTTTTTTTTAATTTAT  350

seq1  CTGACTTCAAGTCATACTAATTACAGCTTCATGTTCCTATAGGTCTGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTCAAGTCATACTAATTACAGCTTCATGTTCCTATAGGTCTGCCA  400

seq1  TTGAATCCAGCAGAGTTGCCTCTTGGTGGGAATCCAGATGTCAGTAGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATCCAGCAGAGTTGCCTCTTGGTGGGAATCCAGATGTCAGTAGTTG  450

seq1  CCATATAGAATAAAGTTTGTCTACTACACATAAGGAGACTTCTGAGAATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATAGAATAAAGTTTGTCTACTACACATAAGGAGACTTCTGAGAATC  500

seq1  ACTTCCAAAGCTTGGGCAGAGAGCAGTCTATCTGGGCAGGGAATGTGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCAAAGCTTGGGCAGAGAGCAGTCTATCTGGGCAGGGAATGTGTAC  550

seq1  TCAGGGAGGGAGCAGCACACCTGGGTGTGGATGAGTCCACCCAGGAACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGGAGGGAGCAGCACACCTGGGTGTGGATGAGTCCACCCAGGAACAT  600

seq1  GCTCCTTCATGCTCTCTCTTCTTCCCAAAGGAATTTGGCATCAAAATGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTTCATGCTCTCTCTTCTTCCCAAAGGAATTTGGCATCAAAATGAA  650

seq1  GGAAAGTTTTCTTCTGGCAAACTTTCAGAGTGATGCATGCTCTTTAGGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTTTTCTTCTGGCAAACTTTCAGAGTGATGCATGCTCTTTAGGAT  700

seq1  GTTTTGTGGGAAACAACTTTAAAAAGTTGTGTTAGAAAAGTAACTTCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTGGGAAACAACTTTAAAAAGTTGTGTTAGAAAAGTAACTTCATT  750

seq1  TTGGGGAACAGGGTACTGAACAGGAGGCAAGGCCTGCACATCTTCTTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGAACAGGGTACTGAACAGGAGGCAAGGCCTGCACATCTTCTTTCT  800

seq1  TGGGGTGTTAGTGGATAAAAAGTTAATTTGTGACAATTTGTCCAGTTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGTTAGTGGATAAAAAGTTAATTTGTGACAATTTGTCCAGTTTTC  850

seq1  TGAAAAGATATCAAACTTGGTTAGCATGTATCTTCTTAAAACTTCCTATG  900
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGAAAAGATATCAAACTTGGTTAGCATGTATCTTCTT-AAACTTCCTATG  899

seq1  TAAATATAATAGCAGCCCCATGAGCTAGATGGCACAACAGATAAGGGCAC  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TAAATATAATAGCAGCCCCATGAGCTAGATGGCACAACAGAT-AGGGCAC  948

seq1  TCACCTCCAAGACTGAGGAGAGAGCCTACTTCTTGGAGTTGTCCTCCGAC  1000
      |||||||| ||||||||||||||| ||||||||| ||| ||||   ||||
seq2  TCACCTCC-AGACTGAGGAGAGAG-CTACTTCTT-GAG-TGTC--TCGAC  992

seq1  TTTCACGTGCACCCTACACATATACAACACAGCTTAGTTAAATATAGAGA  1050
      ||||||||||| ||||||||||||||||||||| ||||||||||||||||
seq2  TTTCACGTGCA-CCTACACATATACAACACAGC-TAGTTAAATATAGAGA  1040

seq1  GCATGCCATCACAGTTT  1067
      |||||||||||||||||
seq2  GCATGCCATCACAGTTT  1057