BAC Information

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BAC

Clone NameB6Ng01-087A06
Chromosome4 (Build37)
Map Location 86,627,849 - 86,764,942
singlet/doubletdoublet
Overlap geneSlc24a2
Upstream geneLOC668052, Adamtsl1, 4930500O09Rik, Rraga, 6230416J20Rik, LOC100040388, Adfp, EG624685, Dennd4c, Rps6, Asah3l
Downstream geneMllt3, BC057079
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087A06.bB6Ng01-087A06.g
ACCDH900259DH900260
length1,1921,162
definitionDH900259|Mus musculus domesticus DNA, BAC clone: B6Ng01-087A06, 5' end.DH900260|Mus musculus domesticus DNA, BAC clone: B6Ng01-087A06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,627,849 - 86,629,061)(86,763,747 - 86,764,942)
sequence
gaattcactgacccaagtgaggggacagggactttaatagaaaacccagc
aatgccaacaggaacacggtcagtagatgtcaaaactaagctgacactga
taagtgtaatccaggtaaggagaaggcaccatgggcaatgagagggatct
gggcttagagtcaagagtgcagcaccaccagctgtggttccagtagaccc
atcctggcagtgtttgggatgccaggacctttgtgttaggtcaggaggtt
gaatctctagacggtgaatgaggggtgtgactcagttatcttacctgctc
caagatggcagatctgctcattgttgtgcttattgtgtgacttttcaaag
cctgggaagatgctataaaaatgtggagatgacaaaagaatccaagttca
taaaatccacactggtgtggtttaggaaccagttttattattattggggt
tttttactccaatatttttatttcaaagtgtttgaaagaaattcaacaca
gtggacaatctcattaaaatgtgaaatgtgtaattatgtctagactcatg
acttttaaaggtaagcgttgactttaatactgtcaacagtattaaaattc
tcatgataatccagtttagtacaacccttcagtttgatttgttgtaagaa
ttgcttgtgacatagttagattttgctattttggtttgtaaatctatcca
gtttttgaggcatctgagaggaacagatgtgtagatcaaatgctggagag
agttcaataactcaactcataagttaaccatttaaatataagtcaattag
tcatattcaaatgaaaaggtgaccatatatatttatataaaaacattcaa
tttatcacaacatctatttttccagcctttttaggataaggtctcacatc
cctgaactagctttgaatttagtatgtagccaaggacgaccccgaggtcc
tgctcctcatgcctccactttcccagtattgagatcacagatgatatcac
atttttttcctgttttcataatagatgttgcaaactgacctcagaaatgg
gtaacagtggtttttaatatatctaattaaacctcatttcatagcataga
ttcctagtgaacaatgaaccccaatcccacccccaaacaacacaacgaaa
aacatccccactcttttgagtcaatgcttatattattacttt
gaattctagtgtacagagctaattcctcctatctaactgtaatgttcaca
ttagccaggctattctcatggccttattccctgctcatagggtcttaaca
ggacaagtcaccgacttccctcctccttatctctttatacccagaataac
tcctcgcaaaggtgagctttctgagatgccatgcattagaatttcagaat
gcctctttagaacccatgatggtgggtttgagggaaaccagccaggatcc
gtagtactcagatccttctactgactgaattagaacacaagagacagagg
tttattggataggagttgaggttcagaaaactagtcattggctgtctatg
gacaccagggagtgacttgggaaaaatcaatgttctaacctctcttttcc
cagttgggtctcctaatgctcatgttagtgcctcatcctggctgagccaa
cagagaacccaaggtcaggaacccactaataacagtgactgaggattata
ctgggttatatggctgggtaatgcaggaccagtgggtatgcagaaaacgg
gtagaataacctgttaactcttgcaggttttcattcccctgtcagcacac
tgggggtgatattagtggctacttcgttgggtttagtttgccacccagca
tatggtaatacacgttattgttttattgtgagttcttcaattaactccac
ttccctgctgttgccttatgaacctactaagtgagaagttcagatttcac
actgtgaactgacacagaggtatagactatgctcagctatgttctacttt
tctgaatcatcagctaaagtgaacattcttcattagtttggaccagtact
gttccagggcagatttggcaaagacttggtgatttacataataaacatag
gaggacggctggaaagatgggtcaaaggtaggcattcttactgcttctgc
agagacccaaagtctattcctagctgcctgtactttggctcagatataat
gcacaccctcctctggcacacacatgcgcatactacacacaaaatagatg
atgatgcatcgatggatgatggcagacgaacgacgacgacgaatttaatc
aagatgagcgtcagtttgttatatttggaggatgggtggcttgacctcag
agctgagtgtct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_86627849_86629061
seq2: B6Ng01-087A06.b_45_1236

seq1  GAATTCACTGACCCAAGTGAGGGGACAGGGACTTTAATAGAAAACCCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGACCCAAGTGAGGGGACAGGGACTTTAATAGAAAACCCAGC  50

seq1  AATGCCAACAGGAACACGGTCAGTAGATGTCAAAACTAAGCTGACACTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCAACAGGAACACGGTCAGTAGATGTCAAAACTAAGCTGACACTGA  100

seq1  TAAGTGTAATCCAGGTAAGGAGAAGGCACCATGGGCAATGAGAGGGATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTAATCCAGGTAAGGAGAAGGCACCATGGGCAATGAGAGGGATCT  150

seq1  GGGCTTAGAGTCAAGAGTGCAGCACCACCAGCTGTGGTTCCAGTAGACCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTAGAGTCAAGAGTGCAGCACCACCAGCTGTGGTTCCAGTAGACCC  200

seq1  ATCCTGGCAGTGTTTGGGATGCCAGGACCTTTGTGTTAGGTCAGGAGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGGCAGTGTTTGGGATGCCAGGACCTTTGTGTTAGGTCAGGAGGTT  250

seq1  GAATCTCTAGACGGTGAATGAGGGGTGTGACTCAGTTATCTTACCTGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCTCTAGACGGTGAATGAGGGGTGTGACTCAGTTATCTTACCTGCTC  300

seq1  CAAGATGGCAGATCTGCTCATTGTTGTGCTTATTGTGTGACTTTTCAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATGGCAGATCTGCTCATTGTTGTGCTTATTGTGTGACTTTTCAAAG  350

seq1  CCTGGGAAGATGCTATAAAAATGTGGAGATGACAAAAGAATCCAAGTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGGAAGATGCTATAAAAATGTGGAGATGACAAAAGAATCCAAGTTCA  400

seq1  TAAAATCCACACTGGTGTGGTTTAGGAACCAGTTTTATTATTATTGGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATCCACACTGGTGTGGTTTAGGAACCAGTTTTATTATTATTGGGGT  450

seq1  TTTTTACTCCAATATTTTTATTTCAAAGTGTTTGAAAGAAATTCAACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTACTCCAATATTTTTATTTCAAAGTGTTTGAAAGAAATTCAACACA  500

seq1  GTGGACAATCTCATTAAAATGTGAAATGTGTAATTATGTCTAGACTCATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACAATCTCATTAAAATGTGAAATGTGTAATTATGTCTAGACTCATG  550

seq1  ACTTTTAAAGGTAAGCGTTGACTTTAATACTGTCAACAGTATTAAAATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTAAAGGTAAGCGTTGACTTTAATACTGTCAACAGTATTAAAATTC  600

seq1  TCATGATAATCCAGTTTAGTACAACCCTTCAGTTTGATTTGTTGTAAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATAATCCAGTTTAGTACAACCCTTCAGTTTGATTTGTTGTAAGAA  650

seq1  TTGCTTGTGACATAGTTAGATTTTGCTATTTTGGTTTGTAAATCTATCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTTGTGACATAGTTAGATTTTGCTATTTTGGTTTGTAAATCTATCCA  700

seq1  GTTTTTGAGGCATCTGAGAGGAACAGATGTGTAGATCAAATGCTGGAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTGAGGCATCTGAGAGGAACAGATGTGTAGATCAAATGCTGGAGAG  750

seq1  AGTTCAATAACTCAACTCATAAGTTAACCATTTAAATATAAGTCAATTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCAATAACTCAACTCATAAGTTAACCATTTAAATATAAGTCAATTAG  800

seq1  TCATATTCAAATGAAAAGGTGACCATATATATTTATATAAAAACATTCAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTCAAATGAAAAGGTGACCATATATATTTATATAAAAACATTCAA  850

seq1  TTTATCACAACATCTATTTTTCCAGCCTTTTTAGGATAAGGTCTCACATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCACAACATCTATTTTTCCAGCCTTTTTAGGATAAGGTCTCACATC  900

seq1  CCTGAACTAGCTTTGAATTTAGTATGTAGCCAAGGACGACCCCGAGGTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAACTAGCTTTGAATTTAGTATGTAGCCAAGGACGACCCCGAGGTCC  950

seq1  TGCTCCTCATGCCTCCACTTTCCCAGTATTGAGATCACAGATGAATATCA  1000
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGCTCCTCATGCCTCCACTTTCCCAGTATTGAGATCACAGATG-ATATCA  999

seq1  CAATTTTTTTCCTGTTTTTCATAATAAGATG-TGCAAACTGACCTCAGAA  1049
      | |||||||||||| |||||||||| ||||| ||||||||||||||||||
seq2  C-ATTTTTTTCCTG-TTTTCATAAT-AGATGTTGCAAACTGACCTCAGAA  1046

seq1  ATGGGTAACAGTGGTTTTTAATATATCTAATTAAAACCTCATTTCATAGG  1099
      |||||||||||||||||||||||||||||||| ||||||||||||||| |
seq2  ATGGGTAACAGTGGTTTTTAATATATCTAATT-AAACCTCATTTCATA-G  1094

seq1  CATAGATTTCTTAGTGAACAAATGACCCCCATGCCCACCCCCACAAAAAC  1149
      |||||| ||| |||||||| ||||| |||||  ||||||||        |
seq2  CATAGA-TTCCTAGTGAAC-AATGAACCCCAATCCCACCCC--------C  1134

seq1  AAACAAACAAACAAAAAACAACCCACACTCTTTTTGGAGTCAATTGTTTT  1199
      ||||||   ||| ||||||| ||| |||||||||  ||||||||  ||  
seq2  AAACAACACAACGAAAAACATCCC-CACTCTTTT--GAGTCAATGCTT--  1179

seq1  ATTATTATTACTTT  1213
        ||||||||||||
seq2  -ATATTATTACTTT  1192

seq1: chr4_86763747_86764942
seq2: B6Ng01-087A06.g_68_1229 (reverse)

seq1  AGACACTCAGCTCTTGAGGGTCAGAGCCACACCATCCTCCAAAAATATAA  50
      ||||||||||||| ||| ||||| |||||| |||||||||  ||||||||
seq2  AGACACTCAGCTC-TGA-GGTCA-AGCCAC-CCATCCTCC--AAATATAA  44

seq1  CCAGAAACTGGACTGCTTCTATCTTTGATTTAAATTCTGTCTGTCTGTCT  100
      |   ||||| ||| |||   ||| |||| |||||||| ||| ||| ||| 
seq2  C---AAACT-GAC-GCT--CATC-TTGA-TTAAATTC-GTC-GTC-GTC-  81

seq1  GTCTGTCTGCCCATCCATCCATCGATGCATC--CATCTATCTTTATTTTT  148
      ||  ||||| |||| ||||||||||||||||  ||||||       ||||
seq2  GTTCGTCTG-CCAT-CATCCATCGATGCATCATCATCTA-------TTTT  122

seq1  GTGTGTTAGTATGCGCATGTGTGTGCCAGAGGAGGGTGTTGCATTATTAT  198
      ||||| |||||||||||||||||||||||||||||||| ||||||| |||
seq2  GTGTG-TAGTATGCGCATGTGTGTGCCAGAGGAGGGTG-TGCATTA-TAT  169

seq1  CTGGAGCCAAAGTTACAGGCAGCTAGGAATAGACTTTGGGTCTTCTGCAG  248
      || ||||||||| ||||||||||||||||||||||||||||| |||||||
seq2  CT-GAGCCAAAG-TACAGGCAGCTAGGAATAGACTTTGGGTC-TCTGCAG  216

seq1  AAGCAGTAAGAATGCCTAACCTTTGACCCATCTTTCCAGCCCTTCCTCCT  298
      ||||||||||||||||| ||||||||||||||||||||| || |||||||
seq2  AAGCAGTAAGAATGCCT-ACCTTTGACCCATCTTTCCAG-CCGTCCTCCT  264

seq1  ATGTTTATTATGTAAATCACCAAGTCTTTGCCAAATCTGCCCTGGAACAG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTATTATGTAAATCACCAAGTCTTTGCCAAATCTGCCCTGGAACAG  314

seq1  TACTGGTCCAAACTAATGAAGAATGTTCACTTTAGCTGATGATTCAGAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGGTCCAAACTAATGAAGAATGTTCACTTTAGCTGATGATTCAGAAA  364

seq1  AGTAGAACATAGCTGAGCATAGTCTATACCTCTGTGTCAGTTCACAGTGT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGAACATAGCTGAGCATAGTCTATACCTCTGTGTCAGTTCACAGTGT  414

seq1  GAAATCTGAACTTCTCACTTAGTAGGTTCATAAGGCAACAGCAGGGAAGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTGAACTTCTCACTTAGTAGGTTCATAAGGCAACAGCAGGGAAGT  464

seq1  GGAGTTAATTGAAGAACTCACAATAAAACAATAACGTGTATTACCATATG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTTAATTGAAGAACTCACAATAAAACAATAACGTGTATTACCATATG  514

seq1  CTGGGTGGCAAACTAAACCCAACGAAGTAGCCACTAATATCACCCCCAGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTGGCAAACTAAACCCAACGAAGTAGCCACTAATATCACCCCCAGT  564

seq1  GTGCTGACAGGGGAATGAAAACCTGCAAGAGTTAACAGGTTATTCTACCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGACAGGGGAATGAAAACCTGCAAGAGTTAACAGGTTATTCTACCC  614

seq1  GTTTTCTGCATACCCACTGGTCCTGCATTACCCAGCCATATAACCCAGTA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTGCATACCCACTGGTCCTGCATTACCCAGCCATATAACCCAGTA  664

seq1  TAATCCTCAGTCACTGTTATTAGTGGGTTCCTGACCTTGGGTTCTCTGTT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCTCAGTCACTGTTATTAGTGGGTTCCTGACCTTGGGTTCTCTGTT  714

seq1  GGCTCAGCCAGGATGAGGCACTAACATGAGCATTAGGAGACCCAACTGGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCAGCCAGGATGAGGCACTAACATGAGCATTAGGAGACCCAACTGGG  764

seq1  AAAAGAGAGGTTAGAACATTGATTTTTCCCAAGTCACTCCCTGGTGTCCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGAGGTTAGAACATTGATTTTTCCCAAGTCACTCCCTGGTGTCCA  814

seq1  TAGACAGCCAATGACTAGTTTTCTGAACCTCAACTCCTATCCAATAAACC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAGCCAATGACTAGTTTTCTGAACCTCAACTCCTATCCAATAAACC  864

seq1  TCTGTCTCTTGTGTTCTAATTCAGTCAGTAGAAGGATCTGAGTACTACGG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCTTGTGTTCTAATTCAGTCAGTAGAAGGATCTGAGTACTACGG  914

seq1  ATCCTGGCTGGTTTCCCTCAAACCCACCATCATGGGTTCTAAAGAGGCAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTGGCTGGTTTCCCTCAAACCCACCATCATGGGTTCTAAAGAGGCAT  964

seq1  TCTGAAATTCTAATGCATGGCATCTCAGAAAGCTCACCTTTGCGAGGAGT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAATTCTAATGCATGGCATCTCAGAAAGCTCACCTTTGCGAGGAGT  1014

seq1  TATTCTGGGTATAAAGAGATAAGGAGGAGGGAAGTCGGTGACTTGTCCTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGGGTATAAAGAGATAAGGAGGAGGGAAGTCGGTGACTTGTCCTG  1064

seq1  TTAAGACCCTATGAGCAGGGAATAAGGCCATGAGAATAGCCTGGCTAATG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGACCCTATGAGCAGGGAATAAGGCCATGAGAATAGCCTGGCTAATG  1114

seq1  TGAACATTACAGTTAGATAGGAGGAATTAGCTCTGTACACTAGAATTC  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATTACAGTTAGATAGGAGGAATTAGCTCTGTACACTAGAATTC  1162