BAC Information

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BAC

Clone NameB6Ng01-087D20
Chromosome4 (Build37)
Map Location 25,537,091 - 25,678,631
singlet/doubletdoublet
Overlap geneFut9
Upstream geneKlhl32, 1110007M04Rik, C230012O17Rik, Gpr63, Fhl5, 1810074P20Rik, Prdx6-rs2, LOC665019, LOC625732
Downstream geneLOC100040780, Hn1-ps1, Manea, Bhmt-ps1, LOC665079, Gng2-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087D20.bB6Ng01-087D20.g
ACCDH900423DH900424
length1,1811,111
definitionDH900423|Mus musculus domesticus DNA, BAC clone: B6Ng01-087D20, 5' end.DH900424|Mus musculus domesticus DNA, BAC clone: B6Ng01-087D20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,537,091 - 25,538,283)(25,677,553 - 25,678,631)
sequence
gaattctttaccctgctcacatctatgatatcatgactgctgtagctgcc
ctttccatggcagagtaggctgctcttcgtttgaatcaatgttttatttt
tggattgcagcaagactcagtttcaggactgtgacttgaaatagtaagta
gagtcaattttcttagcattagattaacttagttgatgttgttaaaatta
gacttaaaagaagcatttttctataaatagacacataaaaacccaaacaa
ataactagggtttccattgctttcataacctcacagtgaaatcaccttca
aacattatgaatatttatactggtgattcgaataactgactgaaagctat
gttctacccattatgtgttacaataaatgacattatttgtagaaggaaca
gttggtctacatatattacttgtttgaaattagagctttcaaaaacacaa
gtacatttctgaaacaaacaaaatgcctgggcatatttttttcaagaatg
gaatgagttttatttcaaatatttccatgagttatcagcatgtaaagcca
tgtctctgttgccaaaattcatattccttatacatttctctaattaataa
gaaacaaaagagtgggtatatccctcccactttactgtactgattggcag
tctatacagtctggatagtctgttattattcagtttagtgtaatgcaggt
gtccctcccttttggcagtagtactgactttggcagtgtttcagaaacga
taagctcttcttaactacacaaaaaagatgccagagtattgtgttcatat
aatgaagcttgtaaaatgatcttctcacatcttcatgctttgtaacggta
agttgtctgtaagatttaccagccaattctttcatttgttgtagtttatt
gccaacaactccaagaaaaagttttctgagaaaatttacaacataatgta
aagagaaaatgaaagcagaacaggattgcatcttggctcactggctcatc
agcactaaaatcacatgtcactttgtaaatataaaaaaggactcttgaaa
gcatggggaccatgcacaccaggttagagaagcttgcattataggtgggc
agtagaaatatgccaccaagctgatgattcattaagcatgcatttttcac
tacaaaccaatcttactattgcatatattta
gaattctttgttcagttctgagccccatttttaatggggttatttgattt
tatggagtctaccttcttgagttctttatatatattggatattagtcccc
tatctgatttgggataggtaaagatcctttcccaatctgttggtggcctt
tttgtcttattgacagtgtcttttgctttgcagaagctttgcaattttat
gaggtcgcatttatagattctcgatcttacagcacaagccattgctgttc
tattcaggcattttttcccagtacctatatcttcgaggcttttccctact
ttctcctctataagtttcagtgtctctggttttatgtggagttccttaat
ccacttagatttgaccttagtacaaggagatagaaatggaccaattcgca
atcttctacatgataaccgccagttgtgccagcaccatttgttgaaaatg
ctgtcttttttccactgcatggttttagctcccttgtcaaagatcaagtg
accataggtgtgtgggttcatttctgggtcttcaatggctgtgatttttt
ttaacaatggaattttagctttcctttacattgaactgctctccaagtaa
gcttgctctccagactttagtcatactcttgtgacaaaaaattcagatag
ttttgtctactatttgtccactgtagatggaaagaatatcaaaattaact
ggagaatatagtcaaaattgttatttaaataaataagctatttgaataca
aggaaataacttcctgaagattttctgaaataggtaatatctgctcaagt
tacacccaaaattattatatttaaaagaatagcaaatataatggctaaaa
tgaatacagataaaattgctgacttttacattattttgcataacttacta
gatttatagaatgaaagcataacatcatgaatgaggaaactgggaaatat
ctttattttcaattaatatgtacaatttaggaaattacaaaaatcttaaa
atttatgtaaatatccatcttgtgctaagattattttgaagaaagataag
ttgaacaaagtattatagaagtttaaaaaatcaaaatttaaaattctagg
attcattttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_25537091_25538283
seq2: B6Ng01-087D20.b_41_1221

seq1  GAATTCTTTACCCTGCTCACATCTATGATATCATGACTGCTGTAGCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTACCCTGCTCACATCTATGATATCATGACTGCTGTAGCTGCC  50

seq1  CTTTCCATGGCAGAGTAGGCTGCTCTTCGTTTGAATCAATGTTTTATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCATGGCAGAGTAGGCTGCTCTTCGTTTGAATCAATGTTTTATTTT  100

seq1  TGGATTGCAGCAAGACTCAGTTTCAGGACTGTGACTTGAAATAGTAAGTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTGCAGCAAGACTCAGTTTCAGGACTGTGACTTGAAATAGTAAGTA  150

seq1  GAGTCAATTTTCTTAGCATTAGATTAACTTAGTTGATGTTGTTAAAATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAATTTTCTTAGCATTAGATTAACTTAGTTGATGTTGTTAAAATTA  200

seq1  GACTTAAAAGAAGCATTTTTCTATAAATAGACACATAAAAACCCAAACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAAAAGAAGCATTTTTCTATAAATAGACACATAAAAACCCAAACAA  250

seq1  ATAACTAGGGTTTCCATTGCTTTCATAACCTCACAGTGAAATCACCTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTAGGGTTTCCATTGCTTTCATAACCTCACAGTGAAATCACCTTCA  300

seq1  AACATTATGAATATTTATACTGGTGATTCGAATAACTGACTGAAAGCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTATGAATATTTATACTGGTGATTCGAATAACTGACTGAAAGCTAT  350

seq1  GTTCTACCCATTATGTGTTACAATAAATGACATTATTTGTAGAAGGAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTACCCATTATGTGTTACAATAAATGACATTATTTGTAGAAGGAACA  400

seq1  GTTGGTCTACATATATTACTTGTTTGAAATTAGAGCTTTCAAAAACACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTCTACATATATTACTTGTTTGAAATTAGAGCTTTCAAAAACACAA  450

seq1  GTACATTTCTGAAACAAACAAAATGCCTGGGCATATTTTTTTCAAGAATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATTTCTGAAACAAACAAAATGCCTGGGCATATTTTTTTCAAGAATG  500

seq1  GAATGAGTTTTATTTCAAATATTTCCATGAGTTATCAGCATGTAAAGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAGTTTTATTTCAAATATTTCCATGAGTTATCAGCATGTAAAGCCA  550

seq1  TGTCTCTGTTGCCAAAATTCATATTCCTTATACATTTCTCTAATTAATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTGTTGCCAAAATTCATATTCCTTATACATTTCTCTAATTAATAA  600

seq1  GAAACAAAAGAGTGGGTATATCCCTCCCACTTTACTGTACTGATTGGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAAAGAGTGGGTATATCCCTCCCACTTTACTGTACTGATTGGCAG  650

seq1  TCTATACAGTCTGGATAGTCTGTTATTATTCAGTTTAGTGTAATGCAGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATACAGTCTGGATAGTCTGTTATTATTCAGTTTAGTGTAATGCAGGT  700

seq1  GTCCCTCCCTTTTGGCAGTAGTACTGACTTTGGCAGTGTTTCAGAAACGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTCCCTTTTGGCAGTAGTACTGACTTTGGCAGTGTTTCAGAAACGA  750

seq1  TAAGCTCTTCTTAACTACACAAAAAAGATGCCAGAGTATTGTGTTCATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTCTTCTTAACTACACAAAAAAGATGCCAGAGTATTGTGTTCATAT  800

seq1  AATGAAGCTTGTAAAATGATCTTCTCACATCTTCATGCTTTGTAACGGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGCTTGTAAAATGATCTTCTCACATCTTCATGCTTTGTAACGGTA  850

seq1  AGTTGTCTGTAAGATTTACCAGCCAATTCTTTCATTTGTTGTAGTTTATT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTCTGTAAGATTTACCAGCCAATTCTTTCATTTGTTGTAGTTTATT  900

seq1  GCCAACAACTCCAAGAAAAAGTTTTCTGAGAAAATTTACAACATAATGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACAACTCCAAGAAAAAGTTTTCTGAGAAAATTTACAACATAATGTA  950

seq1  AAGAAGAAAAATGAAAGCAGAACAGGATTGCATCTTGGCTCACTGGCTCA  1000
      ||||   |||||||||||||||||||||||||||||||||||||||||||
seq2  AAGA--GAAAATGAAAGCAGAACAGGATTGCATCTTGGCTCACTGGCTCA  998

seq1  TCAGCACTAAAAATCACATGTCACTTTGTAAATATTAAAAAAGGACTCTT  1050
      |||||||| ||||||||||||||||||||||||| |||||||||||||||
seq2  TCAGCACT-AAAATCACATGTCACTTTGTAAATA-TAAAAAAGGACTCTT  1046

seq1  GAAAGCATGTGGACCATGCACA-CAGGTTAAGAGAAAGCTTGCA-TATAA  1098
      ||||||||| |||||||||||| |||||| |||| ||||||||| |||| 
seq2  GAAAGCATGGGGACCATGCACACCAGGTT-AGAG-AAGCTTGCATTATAG  1094

seq1  GGTGGCAGTAG-AATATGCCACCAAAGCTGTATGATTCATTATAGCATGC  1147
      |  |||||||| ||||||||||| |||||| ||||||||||| |||||||
seq2  GTGGGCAGTAGAAATATGCCACC-AAGCTG-ATGATTCATTA-AGCATGC  1141

seq1  ATTTTTCACTTACAAACACAATCTTACTATTGGCACATAATATTTA  1193
      ||||||||| ||||||| ||||||||||||||   ||| |||||||
seq2  ATTTTTCAC-TACAAAC-CAATCTTACTATTG---CAT-ATATTTA  1181

seq1: chr4_25677553_25678631
seq2: B6Ng01-087D20.g_104_1177 (reverse)

seq1  TTAAAATTGATTCCTAG-ATTTTAAATTTTTGGATTTTTTAAACTCTAAT  49
      |||||| ||| |||||| ||||||||||||  |||||||||||||   ||
seq2  TTAAAA-TGAATCCTAGAATTTTAAATTTT--GATTTTTTAAACTTCTAT  47

seq1  AATTACTTTTGTTC-ACTTATCTTTC-TCAAAATAATCTTAGCACAAGAT  97
      || ||| ||||||| ||||||||||| |||||||||||||||||||||||
seq2  AA-TAC-TTTGTTCAACTTATCTTTCTTCAAAATAATCTTAGCACAAGAT  95

seq1  GGATATTTACATAAATTTTAAGATTTTTTGTAATTTCCTAAAATTGTACA  147
      ||||||||||||||||||||||| ||||||||||||||| ||||||||| 
seq2  GGATATTTACATAAATTTTAAGA-TTTTTGTAATTTCCT-AAATTGTAC-  142

seq1  ATATTAATTGAAAATAAAGATATTTTCCAGTTTCCTCATTCATGATGTTA  197
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATATTAATTGAAAATAAAGATATTTCCCAGTTTCCTCATTCATGATGTTA  192

seq1  TGCTTTCATTCTATAAATCTAGTAAGTTATGCAAAATAATGTAAAAGTCA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTCATTCTATAAATCTAGTAAGTTATGCAAAATAATGTAAAAGTCA  242

seq1  GCAATTTTATCTGTATTCATTTTAGCCATTATATTTGCTATTCTTTTAAA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTTTATCTGTATTCATTTTAGCCATTATATTTGCTATTCTTTTAAA  292

seq1  TATAATAATTTTGGGTGTAACTTGAGCAGATATTACCTATTTCAGAAAAT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATAATTTTGGGTGTAACTTGAGCAGATATTACCTATTTCAGAAAAT  342

seq1  CTTCAGGAAGTTATTTCCTTGTATTCAAATAGCTTATTTATTTAAATAAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGGAAGTTATTTCCTTGTATTCAAATAGCTTATTTATTTAAATAAC  392

seq1  AATTTTGACTATATTCTCCAGTTAATTTTGATATTCTTTCCATCTACAGT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGACTATATTCTCCAGTTAATTTTGATATTCTTTCCATCTACAGT  442

seq1  GGACAAATAGTAGACAAAACTATCTGAATTTTTTGTCACAAGAGTATGAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAAATAGTAGACAAAACTATCTGAATTTTTTGTCACAAGAGTATGAC  492

seq1  TAAAGTCTGGAGAGCAAGCTTACTTGGAGAGCAGTTCAATGTAAAGGAAA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGTCTGGAGAGCAAGCTTACTTGGAGAGCAGTTCAATGTAAAGGAAA  542

seq1  GCTAAAATTCCATTGTTAAAAAAAATCACAGCCATTGAAGACCCAGAAAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAATTCCATTGTTAAAAAAAATCACAGCCATTGAAGACCCAGAAAT  592

seq1  GAACCCACACACCTATGGTCACTTGATCTTTGACAAGGGAGCTAAAACCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCACACACCTATGGTCACTTGATCTTTGACAAGGGAGCTAAAACCA  642

seq1  TGCAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGTGGAAAAAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGG  692

seq1  CGGTTATCATGTAGAAGATTGCGAATTGGTCCATTTCTATCTCCTTGTAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTATCATGTAGAAGATTGCGAATTGGTCCATTTCTATCTCCTTGTAC  742

seq1  TAAGGTCAAATCTAAGTGGATTAAGGAACTCCACATAAAACCAGAGACAC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTCAAATCTAAGTGGATTAAGGAACTCCACATAAAACCAGAGACAC  792

seq1  TGAAACTTATAGAGGAGAAAGTAGGGAAAAGCCTCGAAGATATAGGTACT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTTATAGAGGAGAAAGTAGGGAAAAGCCTCGAAGATATAGGTACT  842

seq1  GGGAAAAAATGCCTGAATAGAACAGCAATGGCTTGTGCTGTAAGATCGAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAAAATGCCTGAATAGAACAGCAATGGCTTGTGCTGTAAGATCGAG  892

seq1  AATCTATAAATGCGACCTCATAAAATTGCAAAGCTTCTGCAAAGCAAAAG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTATAAATGCGACCTCATAAAATTGCAAAGCTTCTGCAAAGCAAAAG  942

seq1  ACACTGTCAATAAGACAAAAAGGCCACCAACAGATTGGGAAAGGATCTTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTCAATAAGACAAAAAGGCCACCAACAGATTGGGAAAGGATCTTT  992

seq1  ACCTATCCCAAATCAGATAGGGGACTAATATCCAATATATATAAAGAACT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATCCCAAATCAGATAGGGGACTAATATCCAATATATATAAAGAACT  1042

seq1  CAAGAAGGTAGACTCCATAAAATCAAATAACC  1079
      ||||||||||||||||||||||||||||||||
seq2  CAAGAAGGTAGACTCCATAAAATCAAATAACC  1074