BAC Information

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BAC

Clone NameB6Ng01-087F07
Chromosome4 (Build37)2 (Build37)
Map Location 84,997,186 - 84,998,431142,777,347 - 142,777,698
singlet/doubletsingletsinglet
Overlap geneSh3gl2
Upstream geneBnc2, LOC100040660, LOC624465, LOC100040284, D530005L17Rik, LOC622811, LOC100040303
Downstream geneA930009N24, LOC668052, Adamtsl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087F07.bB6Ng01-087F07.g
ACCDH900486DH900487
length1,243985
definitionDH900486|Mus musculus domesticus DNA, BAC clone: B6Ng01-087F07, 5' end.DH900487|Mus musculus domesticus DNA, BAC clone: B6Ng01-087F07, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(84,997,186 - 84,998,431)(142,777,347 - 142,777,698)
sequence
gaattcatagttttcatgttctttagttcacaaactactgactcattttc
tataggggagaatggtactctttagaagtgtatgaaaacgtaatgccatt
atatcagttcaccaattcctgctttttagagttctggtatctggtgcctc
aagactggaattaacaacatcattcattgattaagcagggcatgttcaat
aaagctcaaaccttgttagttcaggaatcctcacattctcttggtaaatc
ttctatacttttgggcccttggggtcttttccctctgttcctgctctcta
gggctgttgacacacacaaaggatccattgacagtgcctgtgtcagtaag
agaggttacattaaaagaaacaaaacaaaacttagagagcattgaaataa
gaaaattgtatggctatcatgtacataaaatagaaatcttaacttcttct
ttaaccctctaagatgtgcaggtatgtttagggtgtatttccaaatttat
acacagcaaagaggtgcttaagaagattaacaaaattaaaatggattcgt
cagcaaccagagcctaattccatcctcatttctcaaaatacgtggtatca
gttagactctgtaagtacatgtgatatccactgtgaagcaagacattttg
gagacaggctgttagctctcaggctacacagaaggttgtctttgaagctc
atccttccctgtggcttactgccatagtctcgaccattagccatcgtgtg
ggaacagcatgcgtgcaaaactcaagggacaagctccagtgtctggcctc
accttccattgtttcttatttacagctgtgtatgccaggatagctgatct
gtgaacttagagtctctggttttcttcctatttatttatttatttattta
tttattcactttacatctgaattgcagcccctctcctcatctccaagttc
tgctcccagaaacttgccccacctgttatcctctctccttctctcagaga
aggaaagtcacccttgggtagcaacccgcactggcacatcaagtttcagc
acgtcctcttcccactgaggccagaacaaggcatctcagctaggggaaag
gtattccaaagccaggtaacagaatcaagagagccaccttactctattgt
taggggaatcctcattgaagactagctgcacctgctcacaaaatggtaag
gggcttaggtcagccttaccggctctgtgtcttgattcagtct
gaattctttattcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccctcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcgattctcgatcttacagcacaagccattgatctt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tcaaatcaacaagatagataaacccttagctagactcactaaagggcaca
gggacaaaatcctaattaacaaaatcagaaatgaaaagggagacataaca
acagatcctgaagaaatccaaaacaccatcagatccttctacaaaaggct
atactcaacaaaactggaaaacctggacgaaatggacaaatttctggaca
gataccaggtaccaaagttgaatcaggatcaagttgaccatctaaacagt
cccatatcacctaaagaaatagaagcagttattaatagtctcccaaccaa
aaaaagcccaggaccagatgggtttagtgcagagttctatcagaccttca
aagaagatctaattccaattctgcacaaactatttcacaaaatagaagta
gaaggtactctacccaactcattttatgaagccactattactctgatacc
taaaccacagaaagatccaacaaagatagagaacttcagaccaatttctc
ttatgaatatcgatgcaaaaatcctcaataaaattctcgctaaccgaatc
caagaacacattaaagcaatcatccatcctgaccaagtaggttttattcc
agggatgcaggatggtttaatatacgaaaatccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_84997186_84998431
seq2: B6Ng01-087F07.b_44_1286

seq1  GAATTCATAGTTTTCATGTTCTTTAGTTCACAAACTACTGACTCATTTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATAGTTTTCATGTTCTTTAGTTCACAAACTACTGACTCATTTTC  50

seq1  TATAGGGGAGAATGGTACTCTTTAGAAGTGTATGAAAACGTAATGCCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGGGAGAATGGTACTCTTTAGAAGTGTATGAAAACGTAATGCCATT  100

seq1  ATATCAGTTCACCAATTCCTGCTTTTTAGAGTTCTGGTATCTGGTGCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAGTTCACCAATTCCTGCTTTTTAGAGTTCTGGTATCTGGTGCCTC  150

seq1  AAGACTGGAATTAACAACATCATTCATTGATTAAGCAGGGCATGTTCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTGGAATTAACAACATCATTCATTGATTAAGCAGGGCATGTTCAAT  200

seq1  AAAGCTCAAACCTTGTTAGTTCAGGAATCCTCACATTCTCTTGGTAAATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTCAAACCTTGTTAGTTCAGGAATCCTCACATTCTCTTGGTAAATC  250

seq1  TTCTATACTTTTGGGCCCTTGGGGTCTTTTCCCTCTGTTCCTGCTCTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATACTTTTGGGCCCTTGGGGTCTTTTCCCTCTGTTCCTGCTCTCTA  300

seq1  GGGCTGTTGACACACACAAAGGATCCATTGACAGTGCCTGTGTCAGTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTTGACACACACAAAGGATCCATTGACAGTGCCTGTGTCAGTAAG  350

seq1  AGAGGTTACATTAAAAGAAACAAAACAAAACTTAGAGAGCATTGAAATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTTACATTAAAAGAAACAAAACAAAACTTAGAGAGCATTGAAATAA  400

seq1  GAAAATTGTATGGCTATCATGTACATAAAATAGAAATCTTAACTTCTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTGTATGGCTATCATGTACATAAAATAGAAATCTTAACTTCTTCT  450

seq1  TTAACCCTCTAAGATGTGCAGGTATGTTTAGGGTGTATTTCCAAATTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACCCTCTAAGATGTGCAGGTATGTTTAGGGTGTATTTCCAAATTTAT  500

seq1  ACACAGCAAAGAGGTGCTTAAGAAGATTAACAAAATTAAAATGGATTCGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGCAAAGAGGTGCTTAAGAAGATTAACAAAATTAAAATGGATTCGT  550

seq1  CAGCAACCAGAGCCTAATTCCATCCTCATTTCTCAAAATACGTGGTATCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAACCAGAGCCTAATTCCATCCTCATTTCTCAAAATACGTGGTATCA  600

seq1  GTTAGACTCTGTAAGTACATGTGATATCCACTGTGAAGCAAGACATTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGACTCTGTAAGTACATGTGATATCCACTGTGAAGCAAGACATTTTG  650

seq1  GAGACAGGCTGTTAGCTCTCAGGCTACACAGAAGGTTGTCTTTGAAGCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGGCTGTTAGCTCTCAGGCTACACAGAAGGTTGTCTTTGAAGCTC  700

seq1  ATCCTTCCCTGTGGCTTACTGCCATAGTCTCGACCATTAGCCATCGTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCCCTGTGGCTTACTGCCATAGTCTCGACCATTAGCCATCGTGTG  750

seq1  GGAACAGCATGCGTGCAAAACTCAAGGGACAAGCTCCAGTGTCTGGCCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGCATGCGTGCAAAACTCAAGGGACAAGCTCCAGTGTCTGGCCTC  800

seq1  ACCTTCCATTGTTTCTTATTTACAGCTGTGTATGCCAGGATAGCTGATCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTCCATTGTTTCTTATTTACAGCTGTGTATGCCAGGATAGCTGATCT  850

seq1  GTGAACTTAGAGTCTCTGGTTTTCTTCCTATTTATTTATTTATTTATTTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACTTAGAGTCTCTGGTTTTCTTCCTATTTATTTATTTATTTATTTA  900

seq1  TTTATTCACTTTACATCTGAATTGCAGCCCCTCTCCTCATCTCCAAGTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCACTTTACATCTGAATTGCAGCCCCTCTCCTCATCTCCAAGTTC  950

seq1  TGCTCCCAGAAACTTGCCCCACCTGTTATCCTCTCTCCTTCTCCTCAGAG  1000
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGCTCCCAGAAACTTGCCCCACCTGTTATCCTCTCTCCTTCT-CTCAGAG  999

seq1  AAGGGAAAGTCACCCTTGGGTAGCAACCCGCACTGGCACATCAAGTTTCA  1050
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AA-GGAAAGTCACCCTTGGGTAGCAACCCGCACTGGCACATCAAGTTTCA  1048

seq1  GCACGTCCTC-TCCCACTGAGGCCAG-ACAAGGCATCCCAGCTAGGGGAA  1098
      |||||||||| ||||||||||||||| |||||||||| ||||||||||||
seq2  GCACGTCCTCTTCCCACTGAGGCCAGAACAAGGCATCTCAGCTAGGGGAA  1098

seq1  GGGTTATCCAAAGGCAGGTAACAGAATCAGAGACAG-CACC-TACTCTAA  1146
       |||  ||||||| ||||||||||||||| ||| || |||| |||||| |
seq2  AGGTATTCCAAAGCCAGGTAACAGAATCA-AGAGAGCCACCTTACTCT-A  1146

seq1  TTGTTAGGGG-ATCCTCA-TGAAGACTAAGCTGCACATCTGCT-ACAAAT  1193
      |||||||||| ||||||| |||||||| ||||||||  ||||| ||||| 
seq2  TTGTTAGGGGAATCCTCATTGAAGACT-AGCTGCAC--CTGCTCACAAA-  1192

seq1  AATGTAGGGGGTCTAGGTCCAGTCTTTACACGCTCTGCTCTTTGATTCAG  1243
      |  ||| ||||  ||||| ||| | ||||  ||||||    |||||||||
seq2  ATGGTAAGGGGCTTAGGT-CAG-CCTTACCGGCTCTGTGTCTTGATTCAG  1240

seq1  TCT  1246
      |||
seq2  TCT  1243

seq1: chr2_142777347_142777698
seq2: B6Ng01-087F07.g_69_420 (reverse)

seq1  GATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAGGAACTTCACATAAAACCAGAGACACTGAAACTTATAGAGGAGA  50

seq1  AAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGGGAAAAGCCTTGAAGATATGGGCACAGGGGAAAAATTCCTGAAC  100

seq1  AGAAGAGCAATGGCTTGTGCTGTAAGATCGAGAATTGACAAATGGGACCT  150
      |||||| |||||||||||||||||||||||||||| ||||||||||||||
seq2  AGAAGATCAATGGCTTGTGCTGTAAGATCGAGAATCGACAAATGGGACCT  150

seq1  AATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACTGTCTATAAGACAA  200
      |||||||||||||||||||||||||||||||||||| ||| |||||||||
seq2  AATGAAACTCCAAAGTTTCTGCAAGGCAAAAGACACCGTCAATAAGACAA  200

seq1  AAAGACCACCAACAGACTGGGAAAGGATCTTTACCTATCCTAAATCAGAT  250
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAAGACCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAAATCAGAT  250

seq1  AGGGGACTAATATCCAACATATATAAAGAACTCAAGAAGGTGGACCTCAG  300
      ||||||||||||||||||||||||||||||||||||| ||||||| ||||
seq2  AGGGGACTAATATCCAACATATATAAAGAACTCAAGAGGGTGGACTTCAG  300

seq1  AAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAACTGAACAAAGAAT  350
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAACTGAATAAAGAAT  350

seq1  TC  352
      ||
seq2  TC  352