BAC Information

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BAC

Clone NameB6Ng01-087J09
Chromosome4 (Build37)
Map Location 87,143,102 - 87,246,865
singlet/doubletdoublet
Overlap genenone
Upstream gene4930500O09Rik, Rraga, 6230416J20Rik, LOC100040388, Adfp, EG624685, Dennd4c, Rps6, Asah3l, Slc24a2
Downstream geneMllt3, BC057079, Ptplad2, Ifnb1, OTTMUSG00000007655, Ifna14, Ifna9, Mrpl48-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087J09.bB6Ng01-087J09.g
ACCDH900670DH900671
length1,2311,133
definitionDH900670|Mus musculus domesticus DNA, BAC clone: B6Ng01-087J09, 5' end.DH900671|Mus musculus domesticus DNA, BAC clone: B6Ng01-087J09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,143,102 - 87,144,337)(87,245,719 - 87,246,865)
sequence
gaattccatttacctggaagaggctgcagggtgccgctaataagtaagca
aacgtgactcctgggattctcaagtcatcccagataaccttctcaaaagt
ctaaaaacagcacggtggctcccctgcctgtgctgtctgtgaaacaggtg
ccggggactttcagtgtcgcaggagaaggaattgtaacttacctcgtgag
gagctgttcccatagtggagatggggtgtataaacatagaaaaaggggca
caggggtggcagatcagctgtgggcgatggggaggatacgctctggtatc
agttcacacagtcttgccagcagcactggggaacagctgtcccccgtatt
ctttaggaagaacacttcggaatactgacatcagaccttctcagaggcct
tggttctctgtggtagctttccatcactgtgacccgaggtgaatacttta
taaaatagaaatattttggctcatagtttcagaagttctgatctatgttt
gcttgagtgatctatgtttcagcgcagtatatcaaggtaaaagtacaaag
tgggaagacctcaccttatggagaccaggaagcaaagagagaagagggca
gctgagacatgagattcccttcaagggcagcccacaaacacctgctgtcc
ttctgctgatggcgtccctggccatcggtctctggtatatggactttggg
agggatatttaaaaggtaaagcgcagcagtccttggcagactctgccagg
gtgcctggcagttgccgtaggaagtgtctgaacctgacactgttgatatt
gctctccagaggctccttactggttcagcctcctcctagtcgagcaagtg
cagaaggtcctgtgagggcagcatcagggtctctcagtcaactgatccac
gggctccacaaccatcctgtttccacccacaggatggggttctatgcttt
ctagactatttgccccactccaccaacttgtgtctctctcattggctata
tcagtaagatgaccacgtgtattgcctcttcctctgcacatccaaagaca
gatttcatctgtcacaactagagctggtgtgaaagcgtgaaatcctaccc
acagccccccgcccctcttccagtctcagatgatccccagcctttgcctc
tacttggctctagcgtttcgccaagtccatcctggctgtctaaggaagga
ttccctccctggatcctatcctcactcaaaa
gaattctcccctctgaattatggaggaagtttggtaacatatgtgcctgg
aatgaagacttgatgaataaaagatctggggtggtcttgtggcttccaag
aaagcaagaggcaagagataaagatgctgcaaagatgagccagaggggag
gtagggctggtcccagagggctagagagataagacctccatccaacagag
ctgacagaaagtatcctgggacatattatagattcactgtgtggtatgga
atattgggaagctgggaggttacagcagagaatcaagtgtttcccaaggc
tttgggtacttgctccaaagaaaaccttagtgttaagatttgtgagataa
atttgttttgcctaattaggtcacctaggaatacctggggtttgtatgca
tttgcccaagtaaagtttgacatgagcatcatacaatattttccgttaat
tagatttcaccgcatagcattgtggtgagagcacttgtattttatgaaat
ctcaagagtactggtgagggagaatatgccatccagagatattttgcaaa
ctaattacctgaggggattcagaggaatttacgaagatggatgtactaca
caagtaataatcttttataaagcatgaagtagtctaattacaaagcaatt
attataatgcatgacagtttttaattctcttccttattttgtgtgatatt
tagttcttattggaaagcaaagcaaaacatagaagaatttttctacttct
agtttcactttttaattattccttagtcatcttgattggccagcaatttt
aactctaaatacctaaatactatttgtaaacaacttaaatttgtttaaaa
gttagttgctaatgaatacatattcacctttgagtcttaaaaccatgttg
atgacttcagacgaacaagttaaagctgtttccatcttggccctgtgttt
tgtgcaggtctattttacttaaaattctcctccctgctgagacacacata
ctcatcacttacgctataattttaaagctgttataaatatttctttgaaa
ctttcggaccatgtaagcatacagaaacatgcattcccgacttttatttt
tgtttggcctcatctgaaatgaagaagcctacg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_87143102_87144337
seq2: B6Ng01-087J09.b_46_1276

seq1  GAATTCCATTTACCTGGAAGAGGCTGCAGGGTGCCGCTAATAAGTAAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTACCTGGAAGAGGCTGCAGGGTGCCGCTAATAAGTAAGCA  50

seq1  AACGTGACTCCTGGGATTCTCAAGTCATCCCAGATAACCTTCTCAAAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTGACTCCTGGGATTCTCAAGTCATCCCAGATAACCTTCTCAAAAGT  100

seq1  CTAAAAACAGCACGGTGGCTCCCCTGCCTGTGCTGTCTGTGAAACAGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAACAGCACGGTGGCTCCCCTGCCTGTGCTGTCTGTGAAACAGGTG  150

seq1  CCGGGGACTTTCAGTGTCGCAGGAGAAGGAATTGTAACTTACCTCGTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGGGACTTTCAGTGTCGCAGGAGAAGGAATTGTAACTTACCTCGTGAG  200

seq1  GAGCTGTTCCCATAGTGGAGATGGGGTGTATAAACATAGAAAAAGGGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGTTCCCATAGTGGAGATGGGGTGTATAAACATAGAAAAAGGGGCA  250

seq1  CAGGGGTGGCAGATCAGCTGTGGGCGATGGGGAGGATACGCTCTGGTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGTGGCAGATCAGCTGTGGGCGATGGGGAGGATACGCTCTGGTATC  300

seq1  AGTTCACACAGTCTTGCCAGCAGCACTGGGGAACAGCTGTCCCCCGTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCACACAGTCTTGCCAGCAGCACTGGGGAACAGCTGTCCCCCGTATT  350

seq1  CTTTAGGAAGAACACTTCGGAATACTGACATCAGACCTTCTCAGAGGCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGGAAGAACACTTCGGAATACTGACATCAGACCTTCTCAGAGGCCT  400

seq1  TGGTTCTCTGTGGTAGCTTTCCATCACTGTGACCCGAGGTGAATACTTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTCTGTGGTAGCTTTCCATCACTGTGACCCGAGGTGAATACTTTA  450

seq1  TAAAATAGAAATATTTTGGCTCATAGTTTCAGAAGTTCTGATCTATGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAGAAATATTTTGGCTCATAGTTTCAGAAGTTCTGATCTATGTTT  500

seq1  GCTTGAGTGATCTATGTTTCAGCGCAGTATATCAAGGTAAAAGTACAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAGTGATCTATGTTTCAGCGCAGTATATCAAGGTAAAAGTACAAAG  550

seq1  TGGGAAGACCTCACCTTATGGAGACCAGGAAGCAAAGAGAGAAGAGGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGACCTCACCTTATGGAGACCAGGAAGCAAAGAGAGAAGAGGGCA  600

seq1  GCTGAGACATGAGATTCCCTTCAAGGGCAGCCCACAAACACCTGCTGTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGACATGAGATTCCCTTCAAGGGCAGCCCACAAACACCTGCTGTCC  650

seq1  TTCTGCTGATGGCGTCCCTGGCCATCGGTCTCTGGTATATGGACTTTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTGATGGCGTCCCTGGCCATCGGTCTCTGGTATATGGACTTTGGG  700

seq1  AGGGATATTTAAAAGGTAAAGCGCAGCAGTCCTTGGCAGACTCTGCCAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATATTTAAAAGGTAAAGCGCAGCAGTCCTTGGCAGACTCTGCCAGG  750

seq1  GTGCCTGGCAGTTGCCGTAGGAAGTGTCTGAACCTGACACTGTTGATATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCCTGGCAGTTGCCGTAGGAAGTGTCTGAACCTGACACTGTTGATATT  800

seq1  GCTCTCCAGAGGCTCCTTACTGGTTCAGCCTCCTCCTAGTCGAGCAAGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCCAGAGGCTCCTTACTGGTTCAGCCTCCTCCTAGTCGAGCAAGTG  850

seq1  CAGAAGGTCCTGTGAGGGCAGCATCAGGGGTCTCTCAGTCAACTGATCCA  900
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CAGAAGGTCCTGTGAGGGCAGCATCA-GGGTCTCTCAGTCAACTGATCCA  899

seq1  CGGGCTCCAACAACCATCCTGTTTCCACCCACAGGATGGGGTTCTATGCT  950
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CGGGCTCC-ACAACCATCCTGTTTCCACCCACAGGATGGGGTTCTATGCT  948

seq1  TTCTAGACTATTTGCCCCAACTCCACCAACTTGTGTCTCTCTCATTGGCT  1000
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTCTAGACTATTTGCCCC-ACTCCACCAACTTGTGTCTCTCTCATTGGCT  997

seq1  ATATCAGTAAGATGACCACGTGTATTGCCTC-TCCTCTGCACAATCCAAA  1049
      ||||||||||||||||||||||||||||||| |||||||||| |||||||
seq2  ATATCAGTAAGATGACCACGTGTATTGCCTCTTCCTCTGCAC-ATCCAAA  1046

seq1  GACAGATTTTCATCTGTCACAACTAGAGCT-GTGTGAAAGCCGTGAAATC  1098
      |||||| ||||||||||||||||||||||| ||||||||| |||||||||
seq2  GACAGA-TTTCATCTGTCACAACTAGAGCTGGTGTGAAAG-CGTGAAATC  1094

seq1  CTACCCACAGCCCCC--GCTCTCTTCAGTTCTCAG-TGGTCCTCAG-CTC  1144
      |||||||||||||||   | ||||||   |||||| || ||| ||| || 
seq2  CTACCCACAGCCCCCCGCCCCTCTTCCAGTCTCAGATGATCCCCAGCCTT  1144

seq1  TGCCTTCTACTTGGGCTCTAAGCGTTTCGCAGTGCCCATCCTGGCTGTCC  1194
      |||| ||||||| |||||| ||||||||||   | ||||||||||||| |
seq2  TGCC-TCTACTT-GGCTCT-AGCGTTTCGCCAAGTCCATCCTGGCTGT-C  1190

seq1  TAAAGGAAAAGAATCCCT-CCTTGATCCTCATCCTCA-TCAAAA  1236
      |||  | || || ||||| ||| |||||| ||||||| ||||||
seq2  TAA--GGAAGGATTCCCTCCCTGGATCCT-ATCCTCACTCAAAA  1231

seq1: chr4_87245719_87246865
seq2: B6Ng01-087J09.g_69_1201 (reverse)

seq1  CGTAGGCTTTCCTTTTCATTTCAGATGTAGTGCCAAAACAAAATAAAAGT  50
      ||||||||    | ||||||||||||| || ||||||  |||||||||||
seq2  CGTAGGCT----TCTTCATTTCAGATG-AG-GCCAAACAAAAATAAAAGT  44

seq1  CGGGAATGCATGGTTTCTGTAATGCTTACATTGGTCTGAAAGTTTCAAAG  100
      ||||||||||| |||||||| ||||||||| ||||| |||||||||||||
seq2  CGGGAATGCAT-GTTTCTGT-ATGCTTACA-TGGTCCGAAAGTTTCAAAG  91

seq1  AAATATTTAATAAACAGCTTTAAAATTATAGCGTAAGTGATGAGTATTGT  150
      |||||||||   |||||||||||||||||||||||||||||||||| |||
seq2  AAATATTTA--TAACAGCTTTAAAATTATAGCGTAAGTGATGAGTA-TGT  138

seq1  GTGTCCTCAGGCAGGGA-GAGAATTTTAAGTAAAATAGGACCTGCACAAA  199
      |||| |||| ||||||| ||||||||||||||||||| ||||||||||||
seq2  GTGT-CTCA-GCAGGGAGGAGAATTTTAAGTAAAATA-GACCTGCACAAA  185

seq1  ACACAGGGCC-AGATGGAAACAGCTTTAACTTGTTCGTCTGGAAGTCATC  248
      |||||||||| ||||||||||||||||||||||||||||| |||||||||
seq2  ACACAGGGCCAAGATGGAAACAGCTTTAACTTGTTCGTCT-GAAGTCATC  234

seq1  AACATGGTTTTAAGACTCAAAGGTGAATATGTATTCATTAGCAACTAACT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGGTTTTAAGACTCAAAGGTGAATATGTATTCATTAGCAACTAACT  284

seq1  TTTAAACAAATTTAAGTTGTTTACAAATAGTATTTAGGTATTTAGAGTTA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAACAAATTTAAGTTGTTTACAAATAGTATTTAGGTATTTAGAGTTA  334

seq1  AAATTGCTGGCCAATCAAGATGACTAAGGAATAATTAAAAAGTGAAACTA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGCTGGCCAATCAAGATGACTAAGGAATAATTAAAAAGTGAAACTA  384

seq1  GAAGTAGAAAAATTCTTCTATGTTTTGCTTTGCTTTCCAATAAGAACTAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAGAAAAATTCTTCTATGTTTTGCTTTGCTTTCCAATAAGAACTAA  434

seq1  ATATCACACAAAATAAGGAAGAGAATTAAAAACTGTCATGCATTATAATA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCACACAAAATAAGGAAGAGAATTAAAAACTGTCATGCATTATAATA  484

seq1  ATTGCTTTGTAATTAGACTACTTCATGCTTTATAAAAGATTATTACTTGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTTTGTAATTAGACTACTTCATGCTTTATAAAAGATTATTACTTGT  534

seq1  GTAGTACATCCATCTTCGTAAATTCCTCTGAATCCCCTCAGGTAATTAGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTACATCCATCTTCGTAAATTCCTCTGAATCCCCTCAGGTAATTAGT  584

seq1  TTGCAAAATATCTCTGGATGGCATATTCTCCCTCACCAGTACTCTTGAGA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAAAATATCTCTGGATGGCATATTCTCCCTCACCAGTACTCTTGAGA  634

seq1  TTTCATAAAATACAAGTGCTCTCACCACAATGCTATGCGGTGAAATCTAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATAAAATACAAGTGCTCTCACCACAATGCTATGCGGTGAAATCTAA  684

seq1  TTAACGGAAAATATTGTATGATGCTCATGTCAAACTTTACTTGGGCAAAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACGGAAAATATTGTATGATGCTCATGTCAAACTTTACTTGGGCAAAT  734

seq1  GCATACAAACCCCAGGTATTCCTAGGTGACCTAATTAGGCAAAACAAATT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATACAAACCCCAGGTATTCCTAGGTGACCTAATTAGGCAAAACAAATT  784

seq1  TATCTCACAAATCTTAACACTAAGGTTTTCTTTGGAGCAAGTACCCAAAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCACAAATCTTAACACTAAGGTTTTCTTTGGAGCAAGTACCCAAAG  834

seq1  CCTTGGGAAACACTTGATTCTCTGCTGTAACCTCCCAGCTTCCCAATATT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGAAACACTTGATTCTCTGCTGTAACCTCCCAGCTTCCCAATATT  884

seq1  CCATACCACACAGTGAATCTATAATATGTCCCAGGATACTTTCTGTCAGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATACCACACAGTGAATCTATAATATGTCCCAGGATACTTTCTGTCAGC  934

seq1  TCTGTTGGATGGAGGTCTTATCTCTCTAGCCCTCTGGGACCAGCCCTACC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTTGGATGGAGGTCTTATCTCTCTAGCCCTCTGGGACCAGCCCTACC  984

seq1  TCCCCTCTGGCTCATCTTTGCAGCATCTTTATCTCTTGCCTCTTGCTTTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTCTGGCTCATCTTTGCAGCATCTTTATCTCTTGCCTCTTGCTTTC  1034

seq1  TTGGAAGCCACAAGACCACCCCAGATCTTTTATTCATCAAGTCTTCATTC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAGCCACAAGACCACCCCAGATCTTTTATTCATCAAGTCTTCATTC  1084

seq1  CAGGCACATATGTTACCAAACTTCCTCCATAATTCAGAGGGGAGAATTC  1147
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCACATATGTTACCAAACTTCCTCCATAATTCAGAGGGGAGAATTC  1133