BAC Information

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BAC

Clone NameB6Ng01-087N13
Chromosome4 (Build37)
Map Location 38,363,125 - 38,587,750
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC277771, LOC100039448
Downstream geneLOC665520, LOC100039487, 1700009N14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087N13.bB6Ng01-087N13.g
ACCDH900858DH900859
length1,1981,139
definitionDH900858|Mus musculus domesticus DNA, BAC clone: B6Ng01-087N13, 5' end.DH900859|Mus musculus domesticus DNA, BAC clone: B6Ng01-087N13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,586,539 - 38,587,750)(38,363,125 - 38,364,261)
sequence
gaattctgttttcatgtcacaattttattcttgctataaattcaaagatt
tgtaaagaaaaaatgtatatatatttagttatgaactccttaaatttaca
cctttacataattgttgtccagtttcctgtgatgtaggaaatactttgaa
agccttaggctgggtcacagtgataggcttgcaatatggtgctatttata
aatttgatcacttttgtacagcatattgctaatatgacaattatacatag
aatgtattcagttcttgatctaaattttgtacatttttaatccatttggt
ctaaacatatatcaaaatatctctaatgacttgagtacttcttgacaaag
cacaaaaaaaaatagtcaagttgttctataaagtggccttcctcctaatc
aactggagttgttaaatgttataaatgtacagacatcataatttaatggc
cttgtgatagatctactgaagtcccaactttgaaagaagtcctcaccttg
ggttaactaagtctgaagcttccaatttatgagtatcacaatgtaagttt
tactcttaaacagtttattcaacactatataagtatcatctttagtaaaa
tttacttccaatatacaatgctagctatattgtttgcattttgaaatcag
aatatctgatgtgtttcaaaaaaatttaatacaatttttgtaagattcct
tagatgtcattatcatcaagttaccactaaaagttaataagtattaagtc
attaataagtttaattcagacaataaaaatttatttaaatattactaaac
aagtatattttaatgtcaaacactattaattaaaatcaaaatgaaaaatg
tcaaaaggtaagtagaaaaacaccctttcaaggataagtactttcttttt
ttcattttttttgaaagtttccatctggcaacttatttatttttttaaaa
aagacaaaacaaaagctagtagttttctattaagatgataattaggcttt
ggtgcttcctgtcaagcctagtgatataagttcaattcccagtgcccaca
gatggaatgggagaatggactcctggaaaatatctgctttacatagctca
taacaagtagcataatacattgtaacaaacatgatcactaatatggttat
ataatttccagaattatcagttataaatgtcaagacctcaactgaatc
gaattccatttttctgttgcatgctattaataatggaatgtcttatactc
taaggtactaagggattgctatttttattactataatactcttgacctat
attagtggacaatgccatgtattttgtgaacacttgtactatttcagatc
ttgttttatggtattgtaaacaactccagtgcaaaggatgatacttttaa
atgtagaacatgctttgtcttctagaattgtcataagtatgttgatctct
atctattggatcttaacagcaaacactgcccgggaataacaaacaaaatt
gtgtccaatcattgtcaaatgtgcattttgtcaaatactacatgtcttca
gtaactggaaaacttttgtttcaagatcactttgcccctttaatagggcc
ctatgtcacttaatgattgtagagaaagatttttttcccattctgataga
aggcaagtcatgattaacagtgatatgtcttttctttctatgataatagc
catttttaattgataaatagtctcattataaattactggtagcctgaacc
ctataaagttaaggggagtcttctgtgtattttaatcttcattttttatt
tgaatcttcatttttctttaacttattatgatcactgggttagaggaatt
ctctgttgtataatcttggggctattacaaacataaatacggaaaaaata
taagcttaaactcttttttccttcttcgtcaatgacaaccagtcacagtt
gtaatttttcacaattttttactgttttattcaggatggtaagtaagcat
cataaaattacaaattagctagaagcacatattaattcctaagatgattc
ttagaaaagcagatgtcttccctctcctaggacatttcaaattaattagc
caagatgaagtatcagcagtagcattttgaaaaatcctccagctaattat
actctacacatatagttcaacattgttattagagacttattcttgggtta
tcatcaaatggatggagaggtcgtcttcagctatgactaaatgagtgaga
acagtcctgaggccattttggaggacagtatgggcaaagcagataagccc
aactagaagttacctggtttcatgtttggccattgtagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_38586539_38587750
seq2: B6Ng01-087N13.b_48_1245 (reverse)

seq1  GATTCACGTTGAGGTCTTTAAACCATTTATAACTGATAATTCTTGAAAAT  50
      |||||| ||||||||||| |   ||||||||||||||||||| || ||||
seq2  GATTCA-GTTGAGGTCTTGA---CATTTATAACTGATAATTC-TGGAAAT  45

seq1  TATATTAAACCATATTAAGTGATCATTGTTTTGTAACAATTGTATTATTG  100
      |||||  ||||||||| |||||||||   ||||| |||| ||||||| ||
seq2  TATAT--AACCATATT-AGTGATCAT--GTTTGTTACAA-TGTATTA-TG  88

seq1  CTTACTTGTTATGAGACTATGTAAAGCAGATATTTT-CAGGAGTCCATTC  149
      | ||||||||||||| |||||||||||||||||||| |||||||||||||
seq2  C-TACTTGTTATGAG-CTATGTAAAGCAGATATTTTCCAGGAGTCCATTC  136

seq1  TCCCATTCCATCCTGTGGGCACTGGGAATTGAACTTATATCACTAGGCTT  199
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCCCATTCCAT-CTGTGGGCACTGGGAATTGAACTTATATCACTAGGCTT  185

seq1  GACAGGAAGCACCAAAGCCTAATTAATCATCTTAATAGAAAACTACTAGC  249
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  GACAGGAAGCACCAAAGCCTAATT-ATCATCTTAATAGAAAACTACTAGC  234

seq1  TTTTGTTTTGTCTTTTTT-AAAAAATAAATAAGTTGCCAGATGGAAACTT  298
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTTTGTTTTGTCTTTTTTAAAAAAATAAATAAGTTGCCAGATGGAAACTT  284

seq1  TCAAAAAAAATGAAAAAAAGAAAGTACTTATCCTTGAAAGGGTGTTTTTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAAAAATGAAAAAAAGAAAGTACTTATCCTTGAAAGGGTGTTTTTC  334

seq1  TACTTACCTTTTGACATTTTTCATTTTGATTTTAATTAATAGTGTTTGAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTACCTTTTGACATTTTTCATTTTGATTTTAATTAATAGTGTTTGAC  384

seq1  ATTAAAATATACTTGTTTAGTAATATTTAAATAAATTTTTATTGTCTGAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATATACTTGTTTAGTAATATTTAAATAAATTTTTATTGTCTGAA  434

seq1  TTAAACTTATTAATGACTTAATACTTATTAACTTTTAGTGGTAACTTGAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTTATTAATGACTTAATACTTATTAACTTTTAGTGGTAACTTGAT  484

seq1  GATAATGACATCTAAGGAATCTTACAAAAATTGTATTAAATTTTTTTGAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAATGACATCTAAGGAATCTTACAAAAATTGTATTAAATTTTTTTGAA  534

seq1  ACACATCAGATATTCTGATTTCAAAATGCAAACAATATAGCTAGCATTGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATCAGATATTCTGATTTCAAAATGCAAACAATATAGCTAGCATTGT  584

seq1  ATATTGGAAGTAAATTTTACTAAAGATGATACTTATATAGTGTTGAATAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGGAAGTAAATTTTACTAAAGATGATACTTATATAGTGTTGAATAA  634

seq1  ACTGTTTAAGAGTAAAACTTACATTGTGATACTCATAAATTGGAAGCTTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTTAAGAGTAAAACTTACATTGTGATACTCATAAATTGGAAGCTTC  684

seq1  AGACTTAGTTAACCCAAGGTGAGGACTTCTTTCAAAGTTGGGACTTCAGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTAGTTAACCCAAGGTGAGGACTTCTTTCAAAGTTGGGACTTCAGT  734

seq1  AGATCTATCACAAGGCCATTAAATTATGATGTCTGTACATTTATAACATT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTATCACAAGGCCATTAAATTATGATGTCTGTACATTTATAACATT  784

seq1  TAACAACTCCAGTTGATTAGGAGGAAGGCCACTTTATAGAACAACTTGAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAACTCCAGTTGATTAGGAGGAAGGCCACTTTATAGAACAACTTGAC  834

seq1  TATTTTTTTTTGTGCTTTGTCAAGAAGTACTCAAGTCATTAGAGATATTT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTTTTGTGCTTTGTCAAGAAGTACTCAAGTCATTAGAGATATTT  884

seq1  TGATATATGTTTAGACCAAATGGATTAAAAATGTACAAAATTTAGATCAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATATGTTTAGACCAAATGGATTAAAAATGTACAAAATTTAGATCAA  934

seq1  GAACTGAATACATTCTATGTATAATTGTCATATTAGCAATATGCTGTACA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGAATACATTCTATGTATAATTGTCATATTAGCAATATGCTGTACA  984

seq1  AAAGTGATCAAATTTATAAATAGCACCATATTGCAAGCCTATCACTGTGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTGATCAAATTTATAAATAGCACCATATTGCAAGCCTATCACTGTGA  1034

seq1  CCCAGCCTAAGGCTTTCAAAGTATTTCCTACATCACAGGAAACTGGACAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCTAAGGCTTTCAAAGTATTTCCTACATCACAGGAAACTGGACAA  1084

seq1  CAATTATGTAAAGGTGTAAATTTAAGGAGTTCATAACTAAATATATATAC  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTATGTAAAGGTGTAAATTTAAGGAGTTCATAACTAAATATATATAC  1134

seq1  ATTTTTTCTTTACAAATCTTTGAATTTATAGCAAGAATAAAATTGTGACA  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTCTTTACAAATCTTTGAATTTATAGCAAGAATAAAATTGTGACA  1184

seq1  TGAAAACAGAATTC  1212
      ||||||||||||||
seq2  TGAAAACAGAATTC  1198

seq1: chr4_38363125_38364261
seq2: B6Ng01-087N13.g_67_1205

seq1  GAATTCCATTTTTCTGTTGCATGCTATTAATAATGGAATGTCTTATACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTTTCTGTTGCATGCTATTAATAATGGAATGTCTTATACTC  50

seq1  TAAGGTACTAAGGGATTGCTATTTTTATTACTATAATACTCTTGACCTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTACTAAGGGATTGCTATTTTTATTACTATAATACTCTTGACCTAT  100

seq1  ATTAGTGGACAATGCCATGTATTTTGTGAACACTTGTACTATTTCAGATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTGGACAATGCCATGTATTTTGTGAACACTTGTACTATTTCAGATC  150

seq1  TTGTTTTATGGTATTGTAAACAACTCCAGTGCAAAGGATGATACTTTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTATGGTATTGTAAACAACTCCAGTGCAAAGGATGATACTTTTAA  200

seq1  ATGTAGAACATGCTTTGTCTTCTAGAATTGTCATAAGTATGTTGATCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGAACATGCTTTGTCTTCTAGAATTGTCATAAGTATGTTGATCTCT  250

seq1  ATCTATTGGATCTTAACAGCAAACACTGCCCGGGAATAACAAACAAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTATTGGATCTTAACAGCAAACACTGCCCGGGAATAACAAACAAAATT  300

seq1  GTGTCCAATCATTGTCAAATGTGCATTTTGTCAAATACTACATGTCTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCAATCATTGTCAAATGTGCATTTTGTCAAATACTACATGTCTTCA  350

seq1  GTAACTGGAAAACTTTTGTTTCAAGATCACTTTGCCCCTTTAATAGGGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTGGAAAACTTTTGTTTCAAGATCACTTTGCCCCTTTAATAGGGCC  400

seq1  CTATGTCACTTAATGATTGTAGAGAAAGATTTTTTTCCCATTCTGATAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTCACTTAATGATTGTAGAGAAAGATTTTTTTCCCATTCTGATAGA  450

seq1  AGGCAAGTCATGATTAACAGTGATATGTCTTTTCTTTCTATGATAATAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAAGTCATGATTAACAGTGATATGTCTTTTCTTTCTATGATAATAGC  500

seq1  CATTTTTAATTGATAAATAGTCTCATTATAAATTACTGGTAGCCTGAACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTAATTGATAAATAGTCTCATTATAAATTACTGGTAGCCTGAACC  550

seq1  CTATAAAGTTAAGGGGAGTCTTCTGTGTATTTTAATCTTCATTTTTTATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAAGTTAAGGGGAGTCTTCTGTGTATTTTAATCTTCATTTTTTATT  600

seq1  TGAATCTTCATTTTTCTTTAACTTATTATGATCACTGGGTTAGAGGAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCTTCATTTTTCTTTAACTTATTATGATCACTGGGTTAGAGGAATT  650

seq1  CTCTGTTGTATAATCTTGGGGCTATTACAAACATAAATACGGAAAAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTGTATAATCTTGGGGCTATTACAAACATAAATACGGAAAAAATA  700

seq1  TAAGCTTAAACTCTTTTTTCCTTCTTCGTCAATGACAACCAGTCACAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTTAAACTCTTTTTTCCTTCTTCGTCAATGACAACCAGTCACAGTT  750

seq1  GTAATTTTTCACAATTTTTTACTGTTTTATTCAGGATGGTAAGTAAGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTTTCACAATTTTTTACTGTTTTATTCAGGATGGTAAGTAAGCAT  800

seq1  CATAAAATTACAAATTAGCTAGAAGCACATATTAATTCCTAAGATGATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAATTACAAATTAGCTAGAAGCACATATTAATTCCTAAGATGATTC  850

seq1  TTAGAAAAGCAGATGTCTTCCCTCTCCTAGGACATTTCAAATTAATTAGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAAGCAGATGTCTTCCCTCTCCTAGGACATTTCAAATTAATTAGC  900

seq1  CAAGATGAAGTATCAGCAGTAGCATTTTGAAAAATCCTCCAGCTAATTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATGAAGTATCAGCAGTAGCATTTTGAAAAATCCTCCAGCTAATTAT  950

seq1  ACTCTACACATATAGTTCAACATTGTTATTAGAGACTTATTCTTGGGTTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTACACATATAGTTCAACATTGTTATTAGAGACTTATTCTTGGGTTA  1000

seq1  TCATCAAATGGAT-GAGAGGTCGTCTTCAGCTATGACTTAAATGAGTGAA  1049
      ||||||||||||| ||||||||||||||||||||||| |||||||||| |
seq2  TCATCAAATGGATGGAGAGGTCGTCTTCAGCTATGAC-TAAATGAGTG-A  1048

seq1  GATCAGTCCTGAGGGCATTTTGGAGGACAGTATTGGCAAAGCAG-TAAGC  1098
      || ||||||||||| |||||||||||||||||| |||||||||| |||||
seq2  GAACAGTCCTGAGGCCATTTTGGAGGACAGTATGGGCAAAGCAGATAAGC  1098

seq1  CACACTAGATG-TACTGGTTTTCATGTTTGG-CATTGTAGT  1137
      |  |||||| | |||  | |||||||||||| |||||||||
seq2  CCAACTAGAAGTTACCTGGTTTCATGTTTGGCCATTGTAGT  1139